Rw2G043800
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
70361817 .. 70363778
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043800.1

Sequence Viewer

Length: 1224 bp
ATGGCAAACATTCTTACCTCTATTACTGCAGTTGTTCTATTCTGGGGATTGGCAGTTGGTACTAGAACAAAGCTATTCTCTTTCGAAGACAGCGTGGTTTCGGCAGTGGCTCCATCTGGTAGTGATGGTATCTGTGCATCAATGGTGCTATCACAAGGCTACCCTTGTGAAGAACATACAGTAACAACACAAGATGGCTACATACTCAGTATGCAGAGAATTCCAGCTGGTAAGTCCGGGGAGACCTCCGGGAACAAGGTACCGGTTCTTCTACAACATGGACTCCTTATGGATGGGATAACATGGCTGCTACTACCTCCAGACGAATCTTTGGCATTCATCTTGGCAGATAATGGGTATGAGGTGTGGATTGCCAATACCCGTGGAACCAAATATAGCCTTGGACATACATCACTCACCCCCGATGATCCGGCTTATTGGGAGTGGTCATGGGATGAATTGGTCGCTTATGACCTCCCAGCCGCATACCAGTATGTGCATGATCAAGCAGGACAGAAGCTTCACTATGTTGGACATTCACTGGGAACTTTGATTGCTCTTGGTGCTTTTTCAGAAGACCAGCTAGTTAACATGTTGAGATCAGCTGTCTTACTTAGCCCAATTGCTCATGTTGGTCAGATAACCTCACCCCTTGCAAAAACTGCTGCTGAAAACTTCATTGCTGAGGATTTATACAAATCAGGTTTTAGAGAATTTGATCCAAAAGGACCAATGATAGTCCAAGTTCTTAAGGAAATCTGCTCCAAACCAGGCGTTGACTGCACAAACTTGATGACCTCTTTCACAGGCCAGAATTGCTGCTTAAATTCATCCATTACCGACATTTTTCTAGACCATGAGCCTCAGGCAACTTCAATAAAAAACATGATCCACCTCGCTCAGATGATAAGAGATGGAAAAGTTGCGATGTTCGACTACAATGACAAGGAGGAGAACCAACAACACTACGGTCAGGACACCCCTCCAGAGTACAAAATGGCGAGCATACCGCATGACATTCCTCTCTTCCTCGGTTATGGAGGGGCAGATGCGCTTTCTGATGTCCAAGATGTGAAGCTATTGCTCAACAGCCTCAAAGATCATGATGGAGATAAGCTTGTGATTCAGTACATAGATGATTATGCTCATGCAGATTTTGTCATGGGTGAAAATGCTAAACAAGATGTGTATGATCCTCTCATGGCTTTCCTCAAACTTCAGTGA

Protein Analysis

407

Amino Acids

44.75

Weight (kDa)

4.65

Isoelectric Point (pI)

26.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 47 - 104 1.2e-21 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 88 - 214 7.2e-09 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000628)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 259
AciI CCGC 2 cut(s) 483, 1010
AclWI GGATC 4 cut(s) 422, 713, 883, 1187
AcsI RAATTY 3 cut(s) 219, 713, 826
AcuI CTGAAG 1 cut(s) 1202
AfaI GTAC 4 cut(s) 61, 261, 992, 1130
AflII CTTAAG 1 cut(s) 749
AflIII ACRYGT 1 cut(s) 591
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 876
AjnI CCWGG 1 cut(s) 769
AluBI AGCT 7 cut(s) 73, 227, 520, 583, 605, 1078, 1117
AluI AGCT 7 cut(s) 73, 227, 520, 583, 605, 1078, 1117
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 4 cut(s) 422, 713, 883, 1187
AoxI GGCC 1 cut(s) 808
ApeKI GCWGC 3 cut(s) 307, 665, 819
ApoI RAATTY 3 cut(s) 219, 713, 826
AsiGI ACCGGT 1 cut(s) 262
Asp718I GGTACC 1 cut(s) 259
AspLEI GCGC 1 cut(s) 1054
AspS9I GGNCC 1 cut(s) 728
AsuC2I CCSGG 2 cut(s) 238, 250
AsuHPI GGTGA 3 cut(s) 409, 639, 1178
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 864
BanI GGYRCC 1 cut(s) 259
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbsI GAAGAC 2 cut(s) 93, 582
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 294, 652, 806
BccI CCATC 6 cut(s) 119, 121, 188, 287, 908, 1100
BciT130I CCWGG 1 cut(s) 771
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 2 cut(s) 238, 250
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 3 cut(s) 63, 584, 851
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 749
BisI GCNGC 4 cut(s) 308, 483, 666, 820
BlsI GCNGC 4 cut(s) 309, 484, 667, 821
Bme1390I CCNGG 3 cut(s) 238, 250, 771
Bme18I GGWCC 1 cut(s) 728
BmgT120I GGNCC 1 cut(s) 728
BmiI GGNNCC 3 cut(s) 111, 261, 388
BmrFI CCNGG 3 cut(s) 238, 250, 771
BmrI ACTGGG 1 cut(s) 551
BmsI GCATC 2 cut(s) 146, 1039
BmuI ACTGGG 1 cut(s) 551
BpiI GAAGAC 2 cut(s) 93, 582
BpmI CTGGAG 2 cut(s) 303, 969
Bpu10I CCTNAGC 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 238, 250
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 4 cut(s) 237, 382, 400, 1030
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 490, 546
Bse21I CCTNAGG 1 cut(s) 864
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 4 cut(s) 237, 382, 400, 1030
BseGI GGATG 3 cut(s) 298, 460, 830
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 4 cut(s) 220, 675, 878, 914
BseNI ACTGG 2 cut(s) 490, 546
BseRI GAGGAG 1 cut(s) 965
BseXI GCAGC 3 cut(s) 294, 652, 806
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 766
BshFI GGCC 1 cut(s) 810
BshNI GGYRCC 1 cut(s) 259
BshTI ACCGGT 1 cut(s) 262
BsiSI CCGG 4 cut(s) 237, 249, 263, 431
BsmAI GTCTC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 1 cut(s) 810
Bso31I GGTCTC 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 84
Bsp143I GATC 7 cut(s) 427, 502, 599, 718, 888, 1099, 1192
BspACI CCGC 2 cut(s) 483, 1010
BspANI GGCC 1 cut(s) 810
BspCNI CTCAG 4 cut(s) 219, 676, 877, 913
BspHI TCATGA 1 cut(s) 1102
BspLI GGNNCC 3 cut(s) 111, 261, 388
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 4 cut(s) 422, 713, 883, 1187
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 2 cut(s) 490, 546
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 4 cut(s) 237, 382, 400, 1030
BssMI GATC 7 cut(s) 427, 502, 599, 718, 888, 1099, 1192
BssT1I CCWWGG 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 2 cut(s) 181, 971
Bst6I CTCTTC 1 cut(s) 1031
BstAFI CTTAAG 1 cut(s) 749
BstAPI GCANNNNNTGC 1 cut(s) 662
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 1003
BstDEI CTNAG 5 cut(s) 206, 614, 684, 864, 900
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 3 cut(s) 298, 460, 830
BstHHI GCGC 1 cut(s) 1054
BstKTI GATC 7 cut(s) 430, 505, 602, 721, 891, 1102, 1195
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 7 cut(s) 427, 502, 599, 718, 888, 1099, 1192
BstMWI GCNNNNNNNGC 4 cut(s) 563, 662, 780, 816
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 3 cut(s) 236, 248, 769
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 294, 652, 806
BstV2I GAAGAC 2 cut(s) 93, 582
Bsu36I CCTNAGG 1 cut(s) 864
BsuRI GGCC 1 cut(s) 810
BtgI CCRYGG 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 941
BtsCI GGATG 3 cut(s) 298, 460, 830
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 111, 539
Cac8I GCNNGC 1 cut(s) 1003
CciI TCATGA 1 cut(s) 1102
CfoI GCGC 1 cut(s) 1054
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 728
Csp6I GTAC 4 cut(s) 60, 260, 991, 1129
CspAI ACCGGT 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviQI GTAC 4 cut(s) 60, 260, 991, 1129
DdeI CTNAG 5 cut(s) 206, 614, 684, 864, 900
DpnI GATC 7 cut(s) 429, 504, 601, 720, 890, 1101, 1194
DpnII GATC 7 cut(s) 427, 502, 599, 718, 888, 1099, 1192
Eam1104I CTCTTC 1 cut(s) 1031
EarI CTCTTC 1 cut(s) 1031
Eco130I CCWWGG 1 cut(s) 400
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 1202
Eco81I CCTNAGG 1 cut(s) 864
EcoRI GAATTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 308, 483, 666, 820
FokI GGATG 3 cut(s) 305, 467, 817
Fsp4HI GCNGC 4 cut(s) 308, 483, 666, 820
FspBI CTAG 3 cut(s) 63, 584, 851
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 4 cut(s) 308, 483, 666, 820
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 303, 969
HaeIII GGCC 1 cut(s) 810
HapII CCGG 4 cut(s) 237, 249, 263, 431
HhaI GCGC 1 cut(s) 1054
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HincII GTYRAC 2 cut(s) 589, 778
HindII GTYRAC 2 cut(s) 589, 778
HindIII AAGCTT 2 cut(s) 518, 1115
HinfI GANTC 3 cut(s) 282, 326, 1123
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 4 cut(s) 237, 249, 263, 431
HphI GGTGA 3 cut(s) 409, 639, 1178
Hpy166II GTNNAC 2 cut(s) 589, 778
Hpy188I TCNGA 4 cut(s) 574, 639, 903, 1060
Hpy188III TCNNGA 5 cut(s) 320, 851, 974, 986, 1103
Hpy8I GTNNAC 2 cut(s) 589, 778
HpyCH4III ACNGT 2 cut(s) 181, 971
HpyCH4V TGCA 7 cut(s) 29, 137, 214, 499, 656, 783, 1151
HpyF10VI GCNNNNNNNGC 4 cut(s) 563, 662, 780, 816
HpyF3I CTNAG 5 cut(s) 206, 614, 684, 864, 900
HspAI GCGC 1 cut(s) 1052
KpnI GGTACC 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 7 cut(s) 427, 502, 599, 718, 888, 1099, 1192
LmnI GCTCC 2 cut(s) 115, 767
Lsp1109I GCAGC 3 cut(s) 294, 652, 806
LweI GCATC 2 cut(s) 146, 1039
MaeI CTAG 3 cut(s) 63, 584, 851
MaeIII GTNAC 1 cut(s) 181
MalI GATC 7 cut(s) 429, 504, 601, 720, 890, 1101, 1194
MboI GATC 7 cut(s) 427, 502, 599, 718, 888, 1099, 1192
MboII GAAGA 5 cut(s) 98, 182, 260, 587, 1018
MfeI CAATTG 1 cut(s) 621
MluCI AATT 6 cut(s) 219, 458, 621, 713, 814, 826
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 511
MseI TTAA 3 cut(s) 588, 750, 824
MspA1I CMGCKG 2 cut(s) 227, 605
MspCI CTTAAG 1 cut(s) 749
MspI CCGG 4 cut(s) 237, 249, 263, 431
MspR9I CCNGG 3 cut(s) 238, 250, 771
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 771
MwoI GCNNNNNNNGC 4 cut(s) 563, 662, 780, 816
NciI CCSGG 2 cut(s) 238, 250
NdeII GATC 7 cut(s) 427, 502, 599, 718, 888, 1099, 1192
NlaIV GGNNCC 3 cut(s) 111, 261, 388
NspI RCATGY 1 cut(s) 595
NspV TTCGAA 1 cut(s) 84
PagI TCATGA 1 cut(s) 1102
PciI ACATGT 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 326, 1123
PfoI TCCNGGA 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 4 cut(s) 309, 484, 667, 821
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PscI ACATGT 1 cut(s) 591
Psp6I CCWGG 1 cut(s) 769
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 3 cut(s) 111, 261, 388
PspPI GGNCC 1 cut(s) 728
PstI CTGCAG 1 cut(s) 31
PvuII CAGCTG 2 cut(s) 227, 605
RsaI GTAC 4 cut(s) 61, 261, 992, 1130
RsaNI GTAC 4 cut(s) 60, 260, 991, 1129
SaqAI TTAA 3 cut(s) 588, 750, 824
SatI GCNGC 4 cut(s) 308, 483, 666, 820
Sau3AI GATC 7 cut(s) 427, 502, 599, 718, 888, 1099, 1192
Sau96I GGNCC 1 cut(s) 728
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 3 cut(s) 238, 250, 771
SfaNI GCATC 2 cut(s) 146, 1039
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 1 cut(s) 728
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 6 cut(s) 219, 458, 621, 713, 814, 826
SsiI CCGC 2 cut(s) 483, 1010
SspMI CTAG 3 cut(s) 63, 584, 851
StyD4I CCNGG 3 cut(s) 236, 248, 769
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 2 cut(s) 181, 971
TaqI TCGA 2 cut(s) 84, 933
TasI AATT 6 cut(s) 219, 458, 621, 713, 814, 826
TatI WGTACW 2 cut(s) 990, 1128
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 2 cut(s) 326, 1123
Tru1I TTAA 3 cut(s) 588, 750, 824
Tru9I TTAA 3 cut(s) 588, 750, 824
TscAI CASTG 2 cut(s) 111, 546
TseI GCWGC 3 cut(s) 307, 665, 819
TspDTI ATGAA 4 cut(s) 328, 471, 667, 819
TspRI CASTG 2 cut(s) 111, 546
Vha464I CTTAAG 1 cut(s) 749
VpaK11BI GGWCC 1 cut(s) 728
XapI RAATTY 3 cut(s) 219, 713, 826
XbaI TCTAGA 1 cut(s) 850
XceI RCATGY 1 cut(s) 595
XspI CTAG 3 cut(s) 63, 584, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.