Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000628

Physical Location & Seq

Genomic Coordinates Forward (+)

8879573 .. 8880430

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1115600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCAACTCTTTCAGCATTCTGCTTCTTGTAGCTCTACTTTGTGTTTCAGCTGCAAGAACTAAGCCGCAATCAATCGGCAACGTCGACGGCGGCATTTGCAAATCGCTGGTGGAGACACAAGGCTACCCTTGCCAAGAACATAAAGTAATGATCAAGTATGATTACATCCTTGGTTTGCAAAGGATTCCAGCCGGGAAGTCTGCTGGTAATGAGACAGCAGCTAAGCTGCCTGTTTTGTTACACCACGGGATCCTTATGGATGCTTCAGCATGGCTACTCAATTCGCCGGACAAAGCTTTGGCGTTTATCTTGGCAGACAATGGTTTCGATGTATGGCTTGCCAACAGTCGTGGCACAGTCTCCAGCCGTGGACACAAAACACTTACTCCGCTTTATCCGGCTTACTGGGACTGGTCATGGGATCAATTGGCTGCTTATGATCTTCCTGCATTGTTTGCGTATGTAAACAATCAAACAGGACAGAAATTACACTATGTTGGGCATTCATTGGTAAATAATTTGTACTTCGTTCATAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

182

Amino Acids

19.92

Weight (kDa)

7.76

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	36 - 95	3.3e-15	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	78 - 171	7.5e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca	FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica	MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica	Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis	pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis	RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata	RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora	Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa	Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha	Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana	Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	3 cut(s)	68, 93, 392
AclWI	GGATC	3 cut(s)	247, 260, 432
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	527
AluBI	AGCT	5 cut(s)	35, 53, 224, 229, 299
AluI	AGCT	5 cut(s)	35, 53, 224, 229, 299
Alw26I	GTCTC	3 cut(s)	110, 209, 367
AlwI	GGATC	3 cut(s)	247, 260, 432
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	53, 221, 229, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AsuC2I	CCSGG	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	40, 216, 233, 421
BceAI	ACGGC	2 cut(s)	106, 354
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	110, 209, 367
BisI	GCNGC	6 cut(s)	54, 68, 94, 222, 230, 435
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	6 cut(s)	55, 69, 95, 223, 231, 436
Bme1390I	CCNGG	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	3 cut(s)	172, 247, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bse1I	ACTGG	2 cut(s)	413, 419
BseDI	CCNNGG	3 cut(s)	172, 247, 370
BseGI	GGATG	2 cut(s)	168, 268
BseNI	ACTGG	2 cut(s)	413, 419
BseXI	GCAGC	4 cut(s)	40, 216, 233, 421
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	195, 290, 401
BslFI	GGGAC	1 cut(s)	425
BsmAI	GTCTC	3 cut(s)	110, 209, 367
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	2 cut(s)	18, 505
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	4 cut(s)	153, 252, 424, 442
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	3 cut(s)	68, 93, 392
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	3 cut(s)	247, 260, 432
BsrI	ACTGG	2 cut(s)	413, 419
BssECI	CCNNGG	3 cut(s)	172, 247, 370
BssMI	GATC	4 cut(s)	153, 252, 424, 442
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	350, 361
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	63, 225
BstDSI	CCRYGG	2 cut(s)	247, 370
BstF5I	GGATG	2 cut(s)	168, 268
BstKTI	GATC	4 cut(s)	156, 255, 427, 445
BstMAI	GTCTC	3 cut(s)	110, 209, 367
BstMBI	GATC	4 cut(s)	153, 252, 424, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 132, 458
BstSCI	CCNGG	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	40, 216, 233, 421
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	247, 370
BtsCI	GGATG	2 cut(s)	168, 268
Cac8I	GCNNGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	526
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	2 cut(s)	273, 420
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	2 cut(s)	63, 225
DpnI	GATC	4 cut(s)	155, 254, 426, 444
DpnII	GATC	4 cut(s)	153, 252, 424, 442
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	276, 423
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	2 cut(s)	272, 419
FbaI	TGATCA	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	6 cut(s)	54, 68, 94, 222, 230, 435
FokI	GGATG	2 cut(s)	155, 275
Fsp4HI	GCNGC	6 cut(s)	54, 68, 94, 222, 230, 435
GluI	GCNGC	6 cut(s)	54, 68, 94, 222, 230, 435
GsuI	CTGGAG	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	195, 290, 401
Hin1II	CATG	2 cut(s)	276, 423
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	3 cut(s)	195, 290, 401
Hpy166II	GTNNAC	3 cut(s)	88, 374, 469
Hpy8I	GTNNAC	3 cut(s)	88, 374, 469
Hpy99I	CGWCG	2 cut(s)	89, 92
HpyCH4III	ACNGT	2 cut(s)	350, 361
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	56, 102, 181, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 132, 458
HpyF3I	CTNAG	2 cut(s)	63, 225
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	276, 423
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	153, 252, 424, 442
Lsp1109I	GCAGC	4 cut(s)	40, 216, 233, 421
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	4 cut(s)	155, 254, 426, 444
MboI	GATC	4 cut(s)	153, 252, 424, 442
MboII	GAAGA	1 cut(s)	437
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	283, 428, 488, 520, 538
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	3 cut(s)	195, 290, 401
MspR9I	CCNGG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	428
Mva1269I	GAATGC	2 cut(s)	18, 505
MwoI	GCNNNNNNNGC	3 cut(s)	99, 132, 458
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	4 cut(s)	153, 252, 424, 442
NlaIII	CATG	2 cut(s)	276, 423
NlaIV	GGNNCC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	2 cut(s)	18, 505
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	6 cut(s)	55, 69, 95, 223, 231, 436
PspN4I	GGNNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SalI	GTCGAC	1 cut(s)	86
SatI	GCNGC	6 cut(s)	54, 68, 94, 222, 230, 435
Sau3AI	GATC	4 cut(s)	153, 252, 424, 442
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	6 cut(s)	37, 55, 87, 226, 231, 301
SfaNI	GCATC	1 cut(s)	253
SgrDI	CGTCGACG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	283, 428, 488, 520, 538
SsiI	CCGC	3 cut(s)	68, 93, 392
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	350, 361
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	87, 330
TasI	AATT	5 cut(s)	283, 428, 488, 520, 538
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	2 cut(s)	70, 96
TfiI	GAWTC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	53, 221, 229, 434
TspDTI	ATGAA	2 cut(s)	498, 524
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.