MD09G1115800.v1.1
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
8882939 .. 8884149
1211 bp
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UTR
Exon/CDS
Intron
MD09G1115800.v1.1.491

Sequence Viewer

Length: 612 bp
ATGGAAAATCCTTCGACCATTATACTTGTTGTGGCTCTACTTTGGGTTTCAATAGTTGCAGCAACAAGAACTAAGCTGCAATCCATCGAAAATGTCGATGGCGGCATTTGCAAATCAATGTTGGAGACACAGGGCTATACTTGCCAAGAACATAAAGTAACAACAGAAGACGGTCACATCCTCGGCTTGCAGAGAATTCCCAAGGGACGGTCTGGTGAAGAGACACCAAACAAGAAGCCTGTTCTGTTACAACATGGGCTCTTAATGGATGCTTCAGCATGGCTACTCAATCCGCCGGATCAAGCTTTGGCATTTATCTTGGCTGACAATGGGTTTGATGTATGGCTTGCTAACACTCGCGGGACAAAGTCTAGTCGTGGACACACATCACTTACTCCTAATGATCCGGCTTACTGGGACTGGTCATGGGATGAATTAGCTGCTTATGATCTTCCGGCTTTATTAAAGTATGTGAACAATCAAACAGGGCAGAATTTACACTATGTTGGGCATTCCTTGGTAAATATTCACCTAATTTGCTCATATCTAAAGTTGGACAATATTAGCGTCCACTCCATGGGTACACCTCTTTGTCCACTCAGTTGTGATTAA

Protein Analysis

204

Amino Acids

22.4

Weight (kDa)

5.69

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 39 - 97 9.6e-22 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 79 - 173 7.8e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000628)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 577
AccII CGCG 1 cut(s) 360
AciI CCGC 3 cut(s) 102, 293, 360
AclWI GGATC 2 cut(s) 306, 398
AcsI RAATTY 2 cut(s) 195, 493
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 583
AfiI CCNNNNNNNGG 2 cut(s) 207, 577
AgsI TTSAA 1 cut(s) 51
AluBI AGCT 3 cut(s) 76, 305, 440
AluI AGCT 3 cut(s) 76, 305, 440
Alw26I GTCTC 2 cut(s) 119, 215
AlwI GGATC 2 cut(s) 306, 398
ApeKI GCWGC 3 cut(s) 59, 76, 440
ApoI RAATTY 2 cut(s) 195, 493
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AsuHPI GGTGA 2 cut(s) 227, 521
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 63, 71, 427
BccI CCATC 2 cut(s) 92, 92
BcoDI GTCTC 2 cut(s) 119, 215
BfaI CTAG 1 cut(s) 372
BisI GCNGC 4 cut(s) 60, 77, 103, 441
BlsI GCNGC 4 cut(s) 61, 78, 104, 442
BmrI ACTGGG 1 cut(s) 424
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 181, 201, 516, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 577
Bse1I ACTGG 2 cut(s) 419, 425
BseDI CCNNGG 4 cut(s) 181, 201, 516, 576
BseGI GGATG 3 cut(s) 177, 274, 436
BseLI CCNNNNNNNGG 2 cut(s) 207, 577
BseNI ACTGG 2 cut(s) 419, 425
BseXI GCAGC 3 cut(s) 63, 71, 427
Bsh1236I CGCG 1 cut(s) 360
BsiSI CCGG 3 cut(s) 296, 407, 455
BslFI GGGAC 3 cut(s) 219, 376, 431
BslI CCNNNNNNNGG 2 cut(s) 207, 577
BsmAI GTCTC 2 cut(s) 119, 215
BsmFI GGGAC 3 cut(s) 219, 376, 431
BsmI GAATGC 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 298, 403, 448
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 3 cut(s) 102, 293, 360
BspCNI CTCAG 1 cut(s) 612
BspFNI CGCG 1 cut(s) 360
BspPI GGATC 2 cut(s) 306, 398
BsrI ACTGG 2 cut(s) 419, 425
BssECI CCNNGG 4 cut(s) 181, 201, 516, 576
BssMI GATC 3 cut(s) 298, 403, 448
BssT1I CCWWGG 3 cut(s) 201, 516, 576
Bst4CI ACNGT 2 cut(s) 173, 210
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 188, 348
BstDEI CTNAG 2 cut(s) 72, 599
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 3 cut(s) 177, 274, 436
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 3 cut(s) 301, 406, 451
BstMAI GTCTC 2 cut(s) 119, 215
BstMBI GATC 3 cut(s) 298, 403, 448
BstMWI GCNNNNNNNGC 2 cut(s) 108, 141
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 3 cut(s) 63, 71, 427
BstV2I GAAGAC 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 3 cut(s) 177, 274, 436
Cac8I GCNNGC 2 cut(s) 188, 348
CseI GACGC 1 cut(s) 556
Csp6I GTAC 1 cut(s) 582
CviAII CATG 4 cut(s) 254, 279, 426, 577
CviQI GTAC 1 cut(s) 582
DdeI CTNAG 2 cut(s) 72, 599
DpnI GATC 3 cut(s) 300, 405, 450
DpnII GATC 3 cut(s) 298, 403, 448
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 282
Eco130I CCWWGG 3 cut(s) 201, 516, 576
Eco24I GRGCYC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 195
EcoT14I CCWWGG 3 cut(s) 201, 516, 576
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 3 cut(s) 201, 516, 576
FaeI CATG 4 cut(s) 257, 282, 429, 580
FaqI GGGAC 3 cut(s) 219, 376, 431
FatI CATG 4 cut(s) 253, 278, 425, 576
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 4 cut(s) 60, 77, 103, 441
FokI GGATG 3 cut(s) 164, 281, 443
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 4 cut(s) 60, 77, 103, 441
FspBI CTAG 1 cut(s) 372
GluI GCNGC 4 cut(s) 60, 77, 103, 441
HapII CCGG 3 cut(s) 296, 407, 455
HgaI GACGC 1 cut(s) 556
Hin1II CATG 4 cut(s) 257, 282, 429, 580
HindIII AAGCTT 1 cut(s) 303
HpaII CCGG 3 cut(s) 296, 407, 455
HphI GGTGA 2 cut(s) 227, 521
Hpy166II GTNNAC 5 cut(s) 380, 475, 571, 584, 596
Hpy8I GTNNAC 5 cut(s) 380, 475, 571, 584, 596
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 2 cut(s) 173, 210
HpyCH4V TGCA 4 cut(s) 59, 79, 111, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 141
HpyF3I CTNAG 2 cut(s) 72, 599
Hsp92II CATG 4 cut(s) 257, 282, 429, 580
Kzo9I GATC 3 cut(s) 298, 403, 448
LpnPI CCDG 9 cut(s) 116, 198, 252, 309, 400, 406, 420, 468, 471
Lsp1109I GCAGC 3 cut(s) 63, 71, 427
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 3 cut(s) 157, 173, 246
MalI GATC 3 cut(s) 300, 405, 450
MboI GATC 3 cut(s) 298, 403, 448
MboII GAAGA 3 cut(s) 179, 230, 443
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 4 cut(s) 195, 434, 493, 534
MmeI TCCRAC 2 cut(s) 102, 534
MnlI CCTC 2 cut(s) 191, 597
MseI TTAA 3 cut(s) 263, 464, 610
MspI CCGG 3 cut(s) 296, 407, 455
Mva1269I GAATGC 1 cut(s) 511
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 108, 141
NcoI CCATGG 1 cut(s) 576
NdeII GATC 3 cut(s) 298, 403, 448
NlaIII CATG 4 cut(s) 257, 282, 429, 580
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 511
PflFI GACNNNGTC 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 577
PkrI GCNGC 4 cut(s) 61, 78, 104, 442
PsyI GACNNNGTC 1 cut(s) 367
RsaI GTAC 1 cut(s) 583
RsaNI GTAC 1 cut(s) 582
SaqAI TTAA 3 cut(s) 263, 464, 610
SatI GCNGC 4 cut(s) 60, 77, 103, 441
Sau3AI GATC 3 cut(s) 298, 403, 448
SduI GDGCHC 1 cut(s) 261
SetI ASST 5 cut(s) 78, 307, 442, 534, 589
SfaNI GCATC 1 cut(s) 259
Sse9I AATT 4 cut(s) 195, 434, 493, 534
SsiI CCGC 3 cut(s) 102, 293, 360
SspI AATATT 2 cut(s) 526, 562
SspMI CTAG 1 cut(s) 372
StyI CCWWGG 3 cut(s) 201, 516, 576
TaaI ACNGT 2 cut(s) 173, 210
TaqI TCGA 3 cut(s) 14, 87, 96
TasI AATT 4 cut(s) 195, 434, 493, 534
TauI GCSGC 1 cut(s) 105
Tru1I TTAA 3 cut(s) 263, 464, 610
Tru9I TTAA 3 cut(s) 263, 464, 610
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 3 cut(s) 59, 76, 440
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 447
Tth111I GACNNNGTC 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 577
XapI RAATTY 2 cut(s) 195, 493
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.