pycom09g04040
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
2982191 .. 2983145
955 bp
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UTR
Exon/CDS
Intron
pycom09g04040.3

Sequence Viewer

Length: 531 bp
ATGGAAAATCCTTCGACCATTATACTTGTTGTGGCTCTACTTTGGGTTTCAGTAGTTGCAGCAACAAGAACTAAGCTGCAATCCATAGAAAATGTCGATGGCGGCATTTGCAAATCAATGTTGGAGACACAGGGCTATACTTGCCAAGAACATAAAGTAACAACTGAAGACGGTTACATCATCGGCTTGCAGAGAATTCCAAAGGGACGGTCTGGTGACGAAACACCAAACAAGAAGCCTGTTCTGTTACAACATGGCCTCTTAATGGATGCTTCAGCATGGCTACTCAATCCGCCGGATCAAGCTTTGGCATTTATCTTGGCAGACAATGGGTTTGATGTATGGCTTGCTAACACTCGCGCAACAAAATCTAGTCGCGGACACACATCACTTACTCCTAATGATCCGGCTTACTGGGACTGGTCATGGGATGAATTAGCTGCTTATGATCTTCCGGCTTTATTCAAGTATGTGAACAATCAAACAGGACAGAATTTACACTATGTTGGGCATTCCTTGAGGGAACTCTGA

Protein Analysis

177

Amino Acids

19.58

Weight (kDa)

5.45

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000628)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 360, 378
AciI CCGC 3 cut(s) 102, 293, 378
AclWI GGATC 2 cut(s) 306, 398
AcsI RAATTY 2 cut(s) 195, 493
AcuI CTGAAG 2 cut(s) 186, 258
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 466
AluBI AGCT 3 cut(s) 76, 305, 440
AluI AGCT 3 cut(s) 76, 305, 440
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 2 cut(s) 306, 398
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 59, 76, 440
ApoI RAATTY 2 cut(s) 195, 493
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 317, 349
AspLEI GCGC 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 63, 71, 427
BccI CCATC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 372
BisI GCNGC 4 cut(s) 60, 77, 103, 441
BlsI GCNGC 4 cut(s) 61, 78, 104, 442
BmrI ACTGGG 1 cut(s) 424
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 419, 425
BseGI GGATG 2 cut(s) 274, 436
BseLI CCNNNNNNNGG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 419, 425
BseXI GCAGC 3 cut(s) 63, 71, 427
Bsh1236I CGCG 2 cut(s) 360, 378
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 3 cut(s) 296, 407, 455
BslFI GGGAC 2 cut(s) 219, 431
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 219, 431
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 1 cut(s) 258
Bsp143I GATC 3 cut(s) 298, 403, 448
BspACI CCGC 3 cut(s) 102, 293, 378
BspANI GGCC 1 cut(s) 258
BspFNI CGCG 2 cut(s) 360, 378
BspPI GGATC 2 cut(s) 306, 398
BsrI ACTGG 2 cut(s) 419, 425
BssMI GATC 3 cut(s) 298, 403, 448
Bst4CI ACNGT 2 cut(s) 173, 210
BstC8I GCNNGC 2 cut(s) 188, 348
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 274, 436
BstFNI CGCG 2 cut(s) 360, 378
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 3 cut(s) 301, 406, 451
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 298, 403, 448
BstMWI GCNNNNNNNGC 2 cut(s) 108, 141
BstUI CGCG 2 cut(s) 360, 378
BstV1I GCAGC 3 cut(s) 63, 71, 427
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 2 cut(s) 274, 436
Cac8I GCNNGC 2 cut(s) 188, 348
CfoI GCGC 1 cut(s) 362
CviAII CATG 3 cut(s) 254, 279, 426
DdeI CTNAG 1 cut(s) 72
DpnI GATC 3 cut(s) 300, 405, 450
DpnII GATC 3 cut(s) 298, 403, 448
EciI GGCGGA 1 cut(s) 282
Eco57I CTGAAG 2 cut(s) 186, 258
EcoRI GAATTC 1 cut(s) 195
FaeI CATG 3 cut(s) 257, 282, 429
FaqI GGGAC 2 cut(s) 219, 431
FatI CATG 3 cut(s) 253, 278, 425
Fnu4HI GCNGC 4 cut(s) 60, 77, 103, 441
FokI GGATG 2 cut(s) 281, 443
Fsp4HI GCNGC 4 cut(s) 60, 77, 103, 441
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 361
GluI GCNGC 4 cut(s) 60, 77, 103, 441
HaeIII GGCC 1 cut(s) 258
HapII CCGG 3 cut(s) 296, 407, 455
HhaI GCGC 1 cut(s) 362
Hin1II CATG 3 cut(s) 257, 282, 429
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 303
HpaII CCGG 3 cut(s) 296, 407, 455
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 1 cut(s) 530
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 2 cut(s) 173, 210
HpyCH4V TGCA 4 cut(s) 59, 79, 111, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 141
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 3 cut(s) 257, 282, 429
HspAI GCGC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 298, 403, 448
LpnPI CCDG 9 cut(s) 116, 198, 252, 309, 400, 406, 420, 468, 471
Lsp1109I GCAGC 3 cut(s) 63, 71, 427
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 4 cut(s) 157, 173, 215, 246
MalI GATC 3 cut(s) 300, 405, 450
MboI GATC 3 cut(s) 298, 403, 448
MboII GAAGA 2 cut(s) 179, 443
MluCI AATT 3 cut(s) 195, 434, 493
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 269, 513
MseI TTAA 1 cut(s) 263
MspI CCGG 3 cut(s) 296, 407, 455
Mva1269I GAATGC 1 cut(s) 511
MvnI CGCG 2 cut(s) 360, 378
MwoI GCNNNNNNNGC 2 cut(s) 108, 141
NdeII GATC 3 cut(s) 298, 403, 448
NlaIII CATG 3 cut(s) 257, 282, 429
NmuCI GTSAC 1 cut(s) 215
PctI GAATGC 1 cut(s) 511
PkrI GCNGC 4 cut(s) 61, 78, 104, 442
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 4 cut(s) 60, 77, 103, 441
Sau3AI GATC 3 cut(s) 298, 403, 448
SetI ASST 3 cut(s) 78, 307, 442
SfaNI GCATC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 3 cut(s) 195, 434, 493
SsiI CCGC 3 cut(s) 102, 293, 378
SspMI CTAG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 173, 210
TaqI TCGA 2 cut(s) 14, 96
TasI AATT 3 cut(s) 195, 434, 493
TauI GCSGC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 3 cut(s) 59, 76, 440
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 447
XapI RAATTY 2 cut(s) 195, 493
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.