Rroxscaffold_2G00127210
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000628
Physical Location & Seq
Forward (+)
62673535 .. 62673969
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127210.1

Sequence Viewer

Length: 225 bp
ATGGTTTCAGCATTTGCTCCAGCTAGTACTGATGGTATCTGTGCATCAATGGTTGTAGCGCAAGGCTACCCTTGTGAAGAACATACAGTAACTACCCAAGATGGCTACATACTCGGTATGCAGAGAATTCTAGCTGGGAAGTCCGGGAGATCTCCGGGAACAAGATGGGATAATATGGCTGCTACTACCTTCAGACCAATATTCTTTGGCATTCATCTTGGCTGA

Protein Analysis

74

Amino Acids

7.89

Weight (kDa)

6.69

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 16 - 51 1.9e-12 Partial alpha/beta-hydrolase lipase region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 1 cut(s) 28
AluBI AGCT 2 cut(s) 23, 134
AluI AGCT 2 cut(s) 23, 134
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 126
AspLEI GCGC 1 cut(s) 61
AsuC2I CCSGG 2 cut(s) 145, 156
BbvI GCAGC 1 cut(s) 166
BccI CCATC 3 cut(s) 26, 95, 159
BcnI CCSGG 2 cut(s) 145, 156
BfaI CTAG 2 cut(s) 24, 131
BglII AGATCT 1 cut(s) 149
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 145, 156
BmrFI CCNGG 2 cut(s) 145, 156
BmsI GCATC 1 cut(s) 53
BpuMI CCSGG 2 cut(s) 145, 156
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 134
BsiSI CCGG 2 cut(s) 144, 155
BsmI GAATGC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 149
BssMI GATC 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 88
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 143, 154
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
CfoI GCGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 6 cut(s) 23, 66, 105, 134, 179, 222
CviKI_1 RGCY 6 cut(s) 23, 66, 105, 134, 179, 222
CviQI GTAC 1 cut(s) 27
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 126
FaiI YATR 4 cut(s) 84, 110, 119, 176
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 24, 131
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 138
HapII CCGG 2 cut(s) 144, 155
HhaI GCGC 1 cut(s) 61
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HpaII CCGG 2 cut(s) 144, 155
Hpy188I TCNGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 44, 121
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 33, 120, 157, 168
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 24, 131
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 1 cut(s) 89
MflI RGATCY 1 cut(s) 149
MluCI AATT 1 cut(s) 126
MspI CCGG 2 cut(s) 144, 155
MspR9I CCNGG 2 cut(s) 145, 156
Mva1269I GAATGC 1 cut(s) 210
NciI CCSGG 2 cut(s) 145, 156
NdeII GATC 1 cut(s) 149
PctI GAATGC 1 cut(s) 210
PfoI TCCNGGA 2 cut(s) 143, 154
PkrI GCNGC 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 149
ScaI AGTACT 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 145, 156
SetI ASST 3 cut(s) 25, 136, 191
SfaNI GCATC 1 cut(s) 53
Sse9I AATT 1 cut(s) 126
SspI AATATT 1 cut(s) 201
SspMI CTAG 2 cut(s) 24, 131
StyD4I CCNGG 2 cut(s) 143, 154
TaaI ACNGT 1 cut(s) 88
TasI AATT 1 cut(s) 126
TatI WGTACW 1 cut(s) 26
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 203
XapI RAATTY 1 cut(s) 126
XspI CTAG 2 cut(s) 24, 131
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.