Rh2AG662500
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000628
Physical Location & Seq
Forward (+)
87806611 .. 87809742
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG662500.1

Sequence Viewer

Length: 873 bp
ATGGCTCTGCGCAGTTTAGCTTTTTGCCTGCTGATGGTTTTGGTTTCTGTCGTTGCACTTGCGCCTGGTGCGGTGGAGGGCTCGAGTCGGAAGCTTTTGGCTCAGGCAAATGCGGCTGTGGCTGCACAGGCGTACGGTATATGCAACGCCTTGGTGACTGTGCATGGTTACCAATGCCAAGAGATAACTGGGACTTTGTTAGCATTGGCTTCGATTTCAGAAGGGAAGCTAGTGGATCAGCTGAAATCAGTAGCTTTGCTAACTCCCATTGCTTACCTGACTCACATGAGTACACCAATCTGTGCGGTTGGGGCCAGACTCTTTGCTGGCGAGATCATAACAGCATTTCGTTTTGCCGAGTTCGATCCAAAAGGAGAGCCCGTGGCTGAATTCTTAGATCATCTATGTGCCACTCCAGGAGTTCCATGTTACGACATATTCTCAATACTCACCGGCAAAAATTGTTGTCTGAATGCTTCCACTGTTGATCTCTTCTTGGATCATCAGCCTCAGTCAACATCAACCAAGAACCTGGTGCACCTGTCTCAAGTTGTACGAAATGGCATTTTGACAAAATACGACCACGGGAGATCGTACACTAATTATATGCATTATGGCTCATTTTTCGCTCCGCATTACGATCTTTCTAAAATTCCCAACAACCTGCCCATGTTCATCACCTACGGCGGCCAAGATGCGCTCTCCGATGAACTCGACGTGTTGCATTTACTTGATCATTTTAAGTCTCACGACGCGGGAAAGCTTGTGGTTGATTTCATCCCCAAGTATGCCCATTTCGATTTTGTCGCGGGGATCAATGCCAAGGACCTTGTGTATAATAAAGTGATTTCTTTCTTCAACCAGCAACAGTAA

Protein Analysis

290

Amino Acids

31.61

Weight (kDa)

6.15

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 11
Acc36I ACCTGC 1 cut(s) 672
AccII CGCG 2 cut(s) 755, 809
AciI CCGC 7 cut(s) 71, 113, 305, 632, 687, 755, 809
AclWI GGATC 4 cut(s) 243, 359, 507, 821
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 2 cut(s) 389, 651
AfaI GTAC 4 cut(s) 134, 292, 555, 596
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 1 cut(s) 859
AjiI CACGTC 1 cut(s) 718
AjnI CCWGG 3 cut(s) 64, 415, 531
AluBI AGCT 6 cut(s) 20, 94, 229, 241, 254, 763
AluI AGCT 6 cut(s) 20, 94, 229, 241, 254, 763
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 2 cut(s) 549, 750
Alw44I GTGCAC 1 cut(s) 536
AlwI GGATC 4 cut(s) 243, 359, 507, 821
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 2 cut(s) 312, 688
ApaLI GTGCAC 1 cut(s) 536
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 389, 651
AspLEI GCGC 3 cut(s) 12, 64, 700
AspS9I GGNCC 2 cut(s) 312, 826
AsuHPI GGTGA 3 cut(s) 166, 442, 670
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 826
BaeGI GKGCMC 1 cut(s) 540
BanII GRGCYC 2 cut(s) 83, 381
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 700
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 3 cut(s) 66, 417, 533
BclI TGATCA 1 cut(s) 733
BcoDI GTCTC 2 cut(s) 549, 750
BfaI CTAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 672
BisI GCNGC 3 cut(s) 114, 123, 688
BlsI GCNGC 3 cut(s) 115, 124, 689
Bme1390I CCNGG 3 cut(s) 66, 417, 533
Bme18I GGWCC 1 cut(s) 826
BmeT110I CYCGRG 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 718
BmgT120I GGNCC 2 cut(s) 312, 826
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 3 cut(s) 66, 417, 533
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 685
BmuI ACTGGG 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 531
BsaJI CCNNGG 4 cut(s) 150, 381, 583, 822
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 3 cut(s) 66, 417, 533
BseDI CCNNGG 4 cut(s) 150, 381, 583, 822
BseGI GGATG 1 cut(s) 777
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 116, 524
BseNI ACTGG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 108
Bsh1236I CGCG 2 cut(s) 755, 809
BshFI GGCC 2 cut(s) 314, 690
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 453
BsiWI CGTACG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 549, 750
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 2 cut(s) 314, 690
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 3 cut(s) 83, 381, 540
BspACI CCGC 7 cut(s) 71, 113, 305, 632, 687, 755, 809
BspANI GGCC 2 cut(s) 314, 690
BspCNI CTCAG 2 cut(s) 115, 523
BspFNI CGCG 2 cut(s) 755, 809
BspLI GGNNCC 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 672
BspPI GGATC 4 cut(s) 243, 359, 507, 821
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 452
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 4 cut(s) 150, 381, 583, 822
BssT1I CCWWGG 2 cut(s) 150, 822
Bst2UI CCWGG 3 cut(s) 66, 417, 533
Bst4CI ACNGT 4 cut(s) 137, 160, 484, 870
Bst6I CTCTTC 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 29, 328
BstDEI CTNAG 3 cut(s) 102, 394, 510
BstDSI CCRYGG 2 cut(s) 381, 583
BstEII GGTNACC 1 cut(s) 167
BstF5I GGATG 1 cut(s) 777
BstFNI CGCG 2 cut(s) 755, 809
BstHHI GCGC 3 cut(s) 12, 64, 700
BstMAI GTCTC 2 cut(s) 549, 750
BstMWI GCNNNNNNNGC 6 cut(s) 68, 113, 119, 122, 128, 311
BstNI CCWGG 3 cut(s) 66, 417, 533
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 64, 415, 531
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 2 cut(s) 755, 809
BstV1I GCAGC 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 532
BsuRI GGCC 2 cut(s) 314, 690
BtgI CCRYGG 2 cut(s) 381, 583
BtrI CACGTC 1 cut(s) 718
BtsCI GGATG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 480
BveI ACCTGC 1 cut(s) 672
Cac8I GCNNGC 2 cut(s) 29, 328
CfoI GCGC 3 cut(s) 12, 64, 700
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 2 cut(s) 312, 826
CseI GACGC 1 cut(s) 761
CsiI ACCWGGT 1 cut(s) 531
Csp6I GTAC 4 cut(s) 133, 291, 554, 595
CviAII CATG 4 cut(s) 164, 286, 426, 670
CviQI GTAC 4 cut(s) 133, 291, 554, 595
DdeI CTNAG 3 cut(s) 102, 394, 510
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 150, 822
Eco24I GRGCYC 2 cut(s) 83, 381
Eco47I GGWCC 1 cut(s) 826
Eco88I CYCGRG 1 cut(s) 82
Eco91I GGTNACC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 826
EcoO65I GGTNACC 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 3 cut(s) 64, 415, 531
EcoT14I CCWWGG 2 cut(s) 150, 822
EcoT22I ATGCAT 1 cut(s) 612
EcoT38I GRGCYC 2 cut(s) 83, 381
ErhI CCWWGG 2 cut(s) 150, 822
FaeI CATG 4 cut(s) 167, 289, 429, 673
FaqI GGGAC 1 cut(s) 205
FatI CATG 4 cut(s) 163, 285, 425, 669
FauI CCCGC 2 cut(s) 748, 802
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 3 cut(s) 114, 123, 688
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 2 cut(s) 83, 381
Fsp4HI GCNGC 3 cut(s) 114, 123, 688
FspBI CTAG 1 cut(s) 230
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 3 cut(s) 11, 63, 699
GluI GCNGC 3 cut(s) 114, 123, 688
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 314, 690
HapII CCGG 1 cut(s) 453
HgaI GACGC 1 cut(s) 761
HhaI GCGC 3 cut(s) 12, 64, 700
Hin1II CATG 4 cut(s) 167, 289, 429, 673
Hin6I GCGC 3 cut(s) 10, 62, 698
HinP1I GCGC 3 cut(s) 10, 62, 698
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 2 cut(s) 92, 761
HinfI GANTC 3 cut(s) 85, 280, 318
HpaII CCGG 1 cut(s) 453
HphI GGTGA 3 cut(s) 166, 442, 670
Hpy166II GTNNAC 4 cut(s) 293, 516, 538, 597
Hpy188I TCNGA 4 cut(s) 90, 220, 471, 706
Hpy188III TCNNGA 1 cut(s) 749
Hpy8I GTNNAC 4 cut(s) 293, 516, 538, 597
Hpy99I CGWCG 2 cut(s) 719, 755
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 4 cut(s) 137, 160, 484, 870
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 7 cut(s) 56, 125, 144, 163, 538, 610, 724
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 113, 119, 122, 128, 311
HpyF3I CTNAG 3 cut(s) 102, 394, 510
HpySE526I ACGT 1 cut(s) 717
Hsp92II CATG 4 cut(s) 167, 289, 429, 673
HspAI GCGC 3 cut(s) 10, 62, 698
Ksp22I TGATCA 1 cut(s) 733
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 685
MabI ACCWGGT 1 cut(s) 531
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 3 cut(s) 154, 167, 428
MboII GAAGA 2 cut(s) 484, 847
MhlI GDGCHC 3 cut(s) 83, 381, 540
MluCI AATT 4 cut(s) 389, 460, 601, 651
MlyI GAGTC 3 cut(s) 94, 274, 312
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 2 cut(s) 70, 519
Mph1103I ATGCAT 1 cut(s) 612
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 3 cut(s) 66, 417, 533
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 3 cut(s) 66, 417, 533
MvnI CGCG 2 cut(s) 755, 809
MwoI GCNNNNNNNGC 6 cut(s) 68, 113, 119, 122, 128, 311
NlaIII CATG 4 cut(s) 167, 289, 429, 673
NlaIV GGNNCC 1 cut(s) 313
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 154
NsbI TGCGCA 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 612
PaeR7I CTCGAG 1 cut(s) 82
PctI GAATGC 1 cut(s) 478
Pfl23II CGTACG 1 cut(s) 132
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 3 cut(s) 115, 124, 689
PleI GAGTC 3 cut(s) 93, 274, 312
PpsI GAGTC 3 cut(s) 93, 274, 312
PpuMI RGGWCCY 1 cut(s) 826
Psp5II RGGWCCY 1 cut(s) 826
Psp6I CCWGG 3 cut(s) 64, 415, 531
PspEI GGTNACC 1 cut(s) 167
PspGI CCWGG 3 cut(s) 64, 415, 531
PspLI CGTACG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 2 cut(s) 312, 826
PspPPI RGGWCCY 1 cut(s) 826
PspXI VCTCGAGB 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 4 cut(s) 134, 292, 555, 596
RsaNI GTAC 4 cut(s) 133, 291, 554, 595
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 3 cut(s) 114, 123, 688
Sau96I GGNCC 2 cut(s) 312, 826
SchI GAGTC 3 cut(s) 94, 274, 312
ScrFI CCNGG 3 cut(s) 66, 417, 533
SduI GDGCHC 3 cut(s) 83, 381, 540
SexAI ACCWGGT 1 cut(s) 531
SfaNI GCATC 1 cut(s) 685
Sfr274I CTCGAG 1 cut(s) 82
SinI GGWCC 1 cut(s) 826
SlaI CTCGAG 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 82, 546
SmoI CTYRAG 2 cut(s) 82, 546
Sse9I AATT 4 cut(s) 389, 460, 601, 651
SsiI CCGC 7 cut(s) 71, 113, 305, 632, 687, 755, 809
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 64, 415, 531
StyI CCWWGG 2 cut(s) 150, 822
TaaI ACNGT 4 cut(s) 137, 160, 484, 870
TaiI ACGT 1 cut(s) 720
TaqI TCGA 5 cut(s) 83, 212, 363, 714, 798
TasI AATT 4 cut(s) 389, 460, 601, 651
TatI WGTACW 1 cut(s) 290
TauI GCSGC 2 cut(s) 116, 690
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 664, 723, 766
TspRI CASTG 1 cut(s) 487
VneI GTGCAC 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 826
XapI RAATTY 2 cut(s) 389, 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 82
XspI CTAG 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.