FvH4_6g53200
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
39046340 .. 39050127
3788 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53200.t1

Sequence Viewer

Length: 1245 bp
ATGGCTCTGCGCTGCTTAGCTTGTTGCATGGTGATCATGGGTTTGGTTTTGTTACTTGCACTCGCTTCCGGTGCCGTAGAGGGTTCGAGACGGCGGCTTTTAGATCAGATAAACGGGGCTGGGGCTGCGAATGCAGAGGCGTACGGTGTATGCAAGGCCCTGGTGACTATGCATGGTTACAAATGCCAGGAGATATTTGTGACTACCGCCGATGGTTACATGCTGAACGTGCAGAGGATTCCGGCAGGTCGTAATGGTGGTGGTGGCGCCGGGAAACAACCGGTGATAATTCAGCATGGTGTTCTTGTGGATGCCGCCACCTGGCTGTTGAACTCTCCGGACAAAAATCTGCCGTTGATTCTGGCTGATAATGGTTATGATGTGTGGATGGCTAACACCAGAGGGACTAGGTTTAGCCGGCGACATACCTCCATGGACCCAAAAGATCCGAATTTTTGGAATTGGTCGTTTGATGAACTGGTGGCTCATGACCTACCGGCTGTTTTTGATTACGTGCATGGCCAAACAAAGCAGAAGATTAACTACATCGGTCACTCCCTGGGGACTTTACTAGCATTGGCTTCGCTTTCAGAAGGGAAGCTGGTAGATCAACTGAAATCGGTAGCTTTGCTAAGTCCGGTTGCTTACCTGACTTACATGAGTACACCAATCGGCGCAGTTGGAGCCAGACTCTTTGCCGGCGAGATCACAAGAATATTTGGTGTTGCAGAGTTCGATCCAAAAGGGGAGCCCGTGGCTACATTAATAGATCATATATGTGACACTGCAGGAGTTCCATGTTACGACTTGTTGGCAATACTTACTGGTAAAAATTGTTGTCTCAATGCTTCCACTGTTGATCTCTTTTTGGATCATGAGCCTCAGCCGACATCAACCAAGACCATGGTGCATCTGTCTCAAGTTGTACGAACTGGTGTTATAGCAAAGTTCGACTACGGGAGATTTGACACCAATTACATGCATTACCGGTCATTTTCCCCTCCGCATTACGACCTTTCTAAGATTCCGACCAACATGCCCATGTTCATCAGCTACGGAGGCCAAGATGCACTCTCCGATGAACTCGACGTGTTGCGTTTACTTGATCATTTGAAGTATCACGACAAGGGGAAGCTTGTGGTTGATTTCATCCACGAGTATGCTCACGCCGATTTTGTCATGGGGATCAATGCCAAGGATCTTGTGTATAACAAAGTGATTTCTTTCATGAAGCAGCAACAATAA

Protein Analysis

415

Amino Acids

45.5

Weight (kDa)

6.42

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 54 - 111 6.9e-17 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 94 - 377 3.4e-10 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000628)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 2 cut(s) 71, 266
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 4 cut(s) 94, 207, 315, 1004
AclWI GGATC 5 cut(s) 440, 731, 879, 1193, 1206
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 1 cut(s) 451
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 3 cut(s) 143, 664, 927
AfiI CCNNNNNNNGG 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 1089
AgeI ACCGGT 2 cut(s) 280, 987
AgsI TTSAA 2 cut(s) 331, 1114
AjiI CACGTC 1 cut(s) 1090
AjnI CCWGG 4 cut(s) 159, 186, 320, 558
AluBI AGCT 5 cut(s) 20, 601, 626, 1053, 1135
AluI AGCT 5 cut(s) 20, 601, 626, 1053, 1135
Alw26I GTCTC 3 cut(s) 82, 845, 921
AlwI GGATC 5 cut(s) 440, 731, 879, 1193, 1206
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 3 cut(s) 156, 520, 1060
ApeKI GCWGC 3 cut(s) 12, 125, 1234
ApoI RAATTY 1 cut(s) 451
AseI ATTAAT 1 cut(s) 764
AsiGI ACCGGT 2 cut(s) 280, 987
AspLEI GCGC 3 cut(s) 12, 269, 677
AspS9I GGNCC 2 cut(s) 157, 436
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 43, 175, 295
AvaII GGWCC 1 cut(s) 436
BalI TGGCCA 1 cut(s) 522
BanI GGYRCC 2 cut(s) 71, 266
BanII GRGCYC 1 cut(s) 753
BarI GAAGNNNNNNTAC 2 cut(s) 527, 559
BauI CACGAG 1 cut(s) 1154
BbvCI CCTCAGC 1 cut(s) 882
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 206, 382
BceAI ACGGC 3 cut(s) 59, 107, 337
BcgI CGANNNNNNTGC 4 cut(s) 564, 598, 1018, 1052
BciT130I CCWGG 4 cut(s) 161, 188, 322, 560
BclI TGATCA 2 cut(s) 33, 1105
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 3 cut(s) 82, 845, 921
BfaI CTAG 2 cut(s) 408, 572
BfmI CTRYAG 1 cut(s) 786
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 5 cut(s) 13, 95, 126, 315, 1235
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 5 cut(s) 14, 96, 127, 316, 1236
Bme1390I CCNGG 5 cut(s) 161, 188, 271, 322, 560
Bme18I GGWCC 1 cut(s) 436
BmgBI CACGTC 1 cut(s) 1090
BmgT120I GGNCC 2 cut(s) 157, 436
BmiI GGNNCC 5 cut(s) 73, 268, 438, 685, 750
BmrFI CCNGG 5 cut(s) 161, 188, 271, 322, 560
BmsI GCATC 3 cut(s) 301, 919, 1057
BplI GAGNNNNNCTC 2 cut(s) 675, 707
Bpu10I CCTNAGC 1 cut(s) 882
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 903
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 514
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 7 cut(s) 159, 432, 558, 559, 753, 903, 1194
BsaWI WCCGGW 5 cut(s) 68, 280, 337, 637, 987
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 5 cut(s) 280, 417, 496, 698, 987
Bse1I ACTGG 3 cut(s) 483, 829, 937
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 4 cut(s) 161, 188, 322, 560
BseDI CCNNGG 7 cut(s) 159, 432, 558, 559, 753, 903, 1194
BseGI GGATG 3 cut(s) 316, 393, 1149
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 896
BseNI ACTGG 3 cut(s) 483, 829, 937
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 3 cut(s) 158, 522, 1062
BshNI GGYRCC 2 cut(s) 71, 266
BshTI ACCGGT 2 cut(s) 280, 987
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 418, 577
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 3 cut(s) 82, 845, 921
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 418, 577
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 3 cut(s) 158, 522, 1062
Bsp1286I GDGCHC 1 cut(s) 753
Bsp13I TCCGGA 1 cut(s) 337
Bsp1720I GCTNAGC 1 cut(s) 16
Bsp19I CCATGG 2 cut(s) 432, 903
BspACI CCGC 4 cut(s) 94, 207, 315, 1004
BspANI GGCC 3 cut(s) 158, 522, 1062
BspCNI CTCAG 1 cut(s) 895
BspEI TCCGGA 1 cut(s) 337
BspHI TCATGA 3 cut(s) 487, 874, 1227
BspLI GGNNCC 5 cut(s) 73, 268, 438, 685, 750
BspMAI CTGCAG 1 cut(s) 790
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 5 cut(s) 440, 731, 879, 1193, 1206
BspT107I GGYRCC 2 cut(s) 71, 266
BsrFI RCCGGY 5 cut(s) 280, 417, 496, 698, 987
BsrI ACTGG 3 cut(s) 483, 829, 937
BssAI RCCGGY 5 cut(s) 280, 417, 496, 698, 987
BssECI CCNNGG 7 cut(s) 159, 432, 558, 559, 753, 903, 1194
BssNI GRCGYC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 1154
BssT1I CCWWGG 3 cut(s) 432, 903, 1194
Bst2BI CACGAG 1 cut(s) 1154
Bst2UI CCWGG 4 cut(s) 161, 188, 322, 560
Bst4CI ACNGT 2 cut(s) 146, 856
BstACI GRCGYC 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 2 cut(s) 419, 700
BstDEI CTNAG 4 cut(s) 16, 632, 882, 1020
BstDSI CCRYGG 3 cut(s) 432, 753, 903
BstF5I GGATG 3 cut(s) 316, 393, 1149
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 12, 269, 677
BstMAI GTCTC 3 cut(s) 82, 845, 921
BstMWI GCNNNNNNNGC 6 cut(s) 71, 125, 131, 229, 683, 1059
BstNI CCWGG 4 cut(s) 161, 188, 322, 560
BstNSI RCATGY 3 cut(s) 223, 982, 1039
BstSCI CCNGG 5 cut(s) 159, 186, 269, 320, 558
BstSFI CTRYAG 1 cut(s) 786
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 445, 1198
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 2 cut(s) 445, 1198
BsuRI GGCC 3 cut(s) 158, 522, 1062
BtgI CCRYGG 3 cut(s) 432, 753, 903
BtrI CACGTC 1 cut(s) 1090
BtsCI GGATG 3 cut(s) 316, 393, 1149
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 2 cut(s) 783, 852
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 419, 700
CciI TCATGA 3 cut(s) 487, 874, 1227
CfoI GCGC 3 cut(s) 12, 269, 677
Cfr10I RCCGGY 5 cut(s) 280, 417, 496, 698, 987
Cfr13I GGNCC 2 cut(s) 157, 436
Csp6I GTAC 3 cut(s) 142, 663, 926
CspAI ACCGGT 2 cut(s) 280, 987
CviQI GTAC 3 cut(s) 142, 663, 926
DdeI CTNAG 4 cut(s) 16, 632, 882, 1020
DinI GGCGCC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 520
Eco130I CCWWGG 3 cut(s) 432, 903, 1194
Eco24I GRGCYC 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 4 cut(s) 159, 186, 320, 558
EcoT14I CCWWGG 3 cut(s) 432, 903, 1194
EcoT22I ATGCAT 2 cut(s) 174, 984
EcoT38I GRGCYC 1 cut(s) 753
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 3 cut(s) 432, 903, 1194
Esp3I CGTCTC 1 cut(s) 82
FaqI GGGAC 2 cut(s) 418, 577
FbaI TGATCA 2 cut(s) 33, 1105
Fnu4HI GCNGC 5 cut(s) 13, 95, 126, 315, 1235
FokI GGATG 3 cut(s) 323, 400, 1136
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 5 cut(s) 13, 95, 126, 315, 1235
FspBI CTAG 2 cut(s) 408, 572
GlaI GCGC 3 cut(s) 11, 268, 676
GluI GCNGC 5 cut(s) 13, 95, 126, 315, 1235
GsaI CCCAGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 3 cut(s) 158, 522, 1062
HhaI GCGC 3 cut(s) 12, 269, 677
Hin1I GRCGYC 1 cut(s) 267
Hin6I GCGC 3 cut(s) 10, 267, 675
HinP1I GCGC 3 cut(s) 10, 267, 675
HindIII AAGCTT 1 cut(s) 1133
HinfI GANTC 4 cut(s) 238, 358, 690, 1024
HphI GGTGA 3 cut(s) 43, 175, 295
Hpy166II GTNNAC 2 cut(s) 665, 1100
Hpy188I TCNGA 5 cut(s) 108, 450, 592, 1029, 1078
Hpy188III TCNNGA 6 cut(s) 87, 338, 488, 875, 1121, 1228
Hpy8I GTNNAC 2 cut(s) 665, 1100
Hpy99I CGWCG 1 cut(s) 1091
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 2 cut(s) 146, 856
HpyCH4IV ACGT 3 cut(s) 228, 513, 1089
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 125, 131, 229, 683, 1059
HpyF3I CTNAG 4 cut(s) 16, 632, 882, 1020
HpySE526I ACGT 3 cut(s) 228, 513, 1089
Hsp92I GRCGYC 1 cut(s) 267
HspAI GCGC 3 cut(s) 10, 267, 675
KasI GGCGCC 1 cut(s) 266
Kpn2I TCCGGA 1 cut(s) 337
KroI GCCGGC 2 cut(s) 417, 698
KroNI GCCGGC 2 cut(s) 419, 700
Ksp22I TGATCA 2 cut(s) 33, 1105
LmnI GCTCC 2 cut(s) 683, 748
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 3 cut(s) 301, 919, 1057
MaeI CTAG 2 cut(s) 408, 572
MaeII ACGT 3 cut(s) 228, 513, 1089
MaeIII GTNAC 8 cut(s) 51, 163, 176, 199, 215, 551, 779, 800
MboII GAAGA 1 cut(s) 547
MflI RGATCY 2 cut(s) 445, 1198
MhlI GDGCHC 1 cut(s) 753
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 5 cut(s) 288, 451, 460, 832, 973
MluNI TGGCCA 1 cut(s) 522
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 684
MmeI TCCRAC 2 cut(s) 661, 1052
MnlI CCTC 8 cut(s) 73, 130, 228, 395, 439, 891, 1011, 1052
Mox20I TGGCCA 1 cut(s) 522
Mph1103I ATGCAT 2 cut(s) 174, 984
MroI TCCGGA 1 cut(s) 337
MroNI GCCGGC 2 cut(s) 417, 698
MscI TGGCCA 1 cut(s) 522
MseI TTAA 2 cut(s) 540, 764
MslI CAYNNNNRTG 3 cut(s) 777, 1040, 1158
Msp20I TGGCCA 1 cut(s) 522
MspR9I CCNGG 5 cut(s) 161, 188, 271, 322, 560
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 4 cut(s) 161, 188, 322, 560
MwoI GCNNNNNNNGC 6 cut(s) 71, 125, 131, 229, 683, 1059
NaeI GCCGGC 2 cut(s) 419, 700
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 1 cut(s) 271
NcoI CCATGG 2 cut(s) 432, 903
NgoMIV GCCGGC 2 cut(s) 417, 698
NlaIV GGNNCC 5 cut(s) 73, 268, 438, 685, 750
NmuCI GTSAC 4 cut(s) 163, 199, 551, 779
NsiI ATGCAT 2 cut(s) 174, 984
NspI RCATGY 3 cut(s) 223, 982, 1039
PagI TCATGA 3 cut(s) 487, 874, 1227
PasI CCCWGGG 1 cut(s) 559
PctI GAATGC 1 cut(s) 136
PdiI GCCGGC 2 cut(s) 419, 700
PfeI GAWTC 3 cut(s) 238, 358, 1024
Pfl23II CGTACG 1 cut(s) 141
PinAI ACCGGT 2 cut(s) 280, 987
PkrI GCNGC 5 cut(s) 14, 96, 127, 316, 1236
PleI GAGTC 1 cut(s) 684
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 684
Ppu21I YACGTR 1 cut(s) 514
PshBI ATTAAT 1 cut(s) 764
Psp6I CCWGG 4 cut(s) 159, 186, 320, 558
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 4 cut(s) 159, 186, 320, 558
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 5 cut(s) 73, 268, 438, 685, 750
PspPI GGNCC 2 cut(s) 157, 436
PstI CTGCAG 1 cut(s) 790
PsuI RGATCY 2 cut(s) 445, 1198
RsaI GTAC 3 cut(s) 143, 664, 927
RsaNI GTAC 3 cut(s) 142, 663, 926
RseI CAYNNNNRTG 3 cut(s) 777, 1040, 1158
SaqAI TTAA 2 cut(s) 540, 764
SatI GCNGC 5 cut(s) 13, 95, 126, 315, 1235
Sau96I GGNCC 2 cut(s) 157, 436
SchI GAGTC 1 cut(s) 684
ScrFI CCNGG 5 cut(s) 161, 188, 271, 322, 560
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 3 cut(s) 301, 919, 1057
SfcI CTRYAG 1 cut(s) 786
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 3 cut(s) 777, 1040, 1158
SmlI CTYRAG 1 cut(s) 918
SmoI CTYRAG 1 cut(s) 918
Sse9I AATT 5 cut(s) 288, 451, 460, 832, 973
SsiI CCGC 4 cut(s) 94, 207, 315, 1004
SspDI GGCGCC 1 cut(s) 266
SspI AATATT 1 cut(s) 717
SspMI CTAG 2 cut(s) 408, 572
StyD4I CCNGG 5 cut(s) 159, 186, 269, 320, 558
StyI CCWWGG 3 cut(s) 432, 903, 1194
TaaI ACNGT 2 cut(s) 146, 856
TaiI ACGT 3 cut(s) 231, 516, 1092
TaqI TCGA 4 cut(s) 86, 735, 951, 1086
TaqII GACCGA 1 cut(s) 539
TasI AATT 5 cut(s) 288, 451, 460, 832, 973
TatI WGTACW 1 cut(s) 662
TauI GCSGC 2 cut(s) 97, 317
TfiI GAWTC 3 cut(s) 238, 358, 1024
Tru1I TTAA 2 cut(s) 540, 764
Tru9I TTAA 2 cut(s) 540, 764
TscAI CASTG 2 cut(s) 790, 859
TseFI GTSAC 4 cut(s) 163, 199, 551, 779
TseI GCWGC 3 cut(s) 12, 125, 1234
Tsp45I GTSAC 4 cut(s) 163, 199, 551, 779
TspDTI ATGAA 6 cut(s) 489, 1036, 1095, 1138, 1216, 1244
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 2 cut(s) 790, 859
VpaK11BI GGWCC 1 cut(s) 436
VspI ATTAAT 1 cut(s) 764
XapI RAATTY 1 cut(s) 451
XceI RCATGY 3 cut(s) 223, 982, 1039
XspI CTAG 2 cut(s) 408, 572
Zsp2I ATGCAT 2 cut(s) 174, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.