Rh2CG513700
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000628
Physical Location & Seq
Reverse (-)
68802654 .. 68804213
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG513700.1

Sequence Viewer

Length: 411 bp
ATGGCAAACATTCTTACCTCTATTACTGCAGTTGTTCTATTCTGGGGATTGGCAGTTGGTACTAGAACAAAGCTATTCTCTTTCGAAGACAGCGTGGTTTCGGCAGTGGCTCCATCTGGTAGTGATGGTATCTGTGCATCAATGGTGCTATCACAAGGCTACCCTTGTGAAGAACATACAGATTTATACAAATCAGGTTTTAGAGAATTTGATCCAAAAGGACCAATGGTAGTCCAAGTTCTTAAGGAAATCTGCTCCAAACCAGGCGTTGACTGCACAAACTTGATGACCTCTTTCACAGGCCAGAATTGCTGCTTAAATTCATCCATTACCGACATTTTTCTAGACCATGAGCCTCAGGCAACTTCAATAAAAAACATGATCCACCTCGCTCAGAGTAAGTGTTCCTAA

Protein Analysis

136

Amino Acids

14.66

Weight (kDa)

5.19

Isoelectric Point (pI)

28.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 206, 376
AcsI RAATTY 2 cut(s) 206, 319
AfaI GTAC 1 cut(s) 61
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 369
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 2 cut(s) 206, 376
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 2 cut(s) 206, 319
AspS9I GGNCC 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 119, 121
BciT130I CCWGG 1 cut(s) 264
BfaI CTAG 2 cut(s) 63, 344
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 242
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 84
Bse21I CCTNAGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 371, 407
BseXI GCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 259
BshFI GGCC 1 cut(s) 303
BsnI GGCC 1 cut(s) 303
Bsp119I TTCGAA 1 cut(s) 84
Bsp143I GATC 2 cut(s) 211, 381
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 2 cut(s) 370, 406
BspLI GGNNCC 1 cut(s) 111
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 2 cut(s) 206, 376
BspT104I TTCGAA 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 242
BssMI GATC 2 cut(s) 211, 381
Bst2UI CCWGG 1 cut(s) 264
BstAFI CTTAAG 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 357, 393
BstF5I GGATG 1 cut(s) 323
BstKTI GATC 2 cut(s) 214, 384
BstMBI GATC 2 cut(s) 211, 381
BstMWI GCNNNNNNNGC 2 cut(s) 273, 309
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 93
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 323
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 60
CviAII CATG 2 cut(s) 350, 379
CviJI RGCY 5 cut(s) 73, 110, 159, 303, 355
CviKI_1 RGCY 5 cut(s) 73, 110, 159, 303, 355
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 357, 393
DpnI GATC 2 cut(s) 213, 383
DpnII GATC 2 cut(s) 211, 381
Eco47I GGWCC 1 cut(s) 221
Eco81I CCTNAGG 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 353, 382
FaiI YATR 4 cut(s) 177, 187, 351, 380
FatI CATG 2 cut(s) 349, 378
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 2 cut(s) 63, 344
GluI GCNGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 303
Hin1II CATG 2 cut(s) 353, 382
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 29, 137, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 309
HpyF3I CTNAG 2 cut(s) 357, 393
Hsp92II CATG 2 cut(s) 353, 382
Kzo9I GATC 2 cut(s) 211, 381
LmnI GCTCC 2 cut(s) 115, 260
LpnPI CCDG 8 cut(s) 28, 102, 180, 249, 276, 285, 317, 344
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 63, 344
MalI GATC 2 cut(s) 213, 383
MboI GATC 2 cut(s) 211, 381
MboII GAAGA 2 cut(s) 98, 182
MluCI AATT 3 cut(s) 206, 307, 319
MnlI CCTC 4 cut(s) 28, 301, 366, 398
MseI TTAA 2 cut(s) 243, 317
MspCI CTTAAG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 273, 309
NdeII GATC 2 cut(s) 211, 381
NlaIII CATG 2 cut(s) 353, 382
NlaIV GGNNCC 1 cut(s) 111
NspV TTCGAA 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 221
PsrI GAACNNNNNNTAC 2 cut(s) 222, 254
PstI CTGCAG 1 cut(s) 31
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 243, 317
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 2 cut(s) 211, 381
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 264
SetI ASST 5 cut(s) 20, 75, 199, 293, 390
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 206, 307, 319
SspMI CTAG 2 cut(s) 63, 344
StyD4I CCNGG 1 cut(s) 262
TaqI TCGA 1 cut(s) 84
TasI AATT 3 cut(s) 206, 307, 319
Tru1I TTAA 2 cut(s) 243, 317
Tru9I TTAA 2 cut(s) 243, 317
TscAI CASTG 1 cut(s) 111
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 111
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 2 cut(s) 206, 319
XbaI TCTAGA 1 cut(s) 343
XspI CTAG 2 cut(s) 63, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.