Rmu_co8519319.1_g000002
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8519319.1
OG0000628
Physical Location & Seq
Forward (+)
3065 .. 5026
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8519319.1_g000002.1.cds

Sequence Viewer

Length: 1239 bp
atggcaaacattcttacctctattactgcagttgttctattctggggattggcagttggtactagaacaaagctattctctttcgaagacagcatggtttcagcagtggctccatctggtagtgatggtatctgtgcatcaatggtgctatcacaaggctacccttgtgaagaacatacagtaacaacacaagatggctacatactcagtatgcagagaattccagctggtaagtccggggagacctccgggaataaggtaccggttcttctacaacatggactccttatggatgggataacatggctgctactacctccagacgaatctttggcattcatcttggcagataatgggtatgaggtgtggattgccaatacccgtggaaccaaatatagccttggacatacatcactcacccccgatgatccggcttattgggagtggtcatgggatgaattggtcgcttatgacctcccagccgcataccagtatgtgcatgatcaagcaggacagaagcttcactatgttggacattcactggtgaatttcacaactggaactttgattgctcttggtgctttttcagaagaccagctagttaacatgttgagatcagctgtcttacttagcccaattgctcatgttggtcagataacctcaccccttgcaaaaactgctgctgaaaacttcattgctgaggatttatacaaatcaggttttagagaatttgatccaaaaggaccaatgatagtccaagttcttaaggaaatctgctccaaaccaggcgttgactgcacaaacttgatgacctctttcacaggccagaattgctgcttaaattcatccattaccgacatttttctagaccatgagcctcaggcaacttcaataaaaaacatgatccacctcgctcagatgataagagatggaaaagttgcgatgttcgactacaatgacaaggaggagaaccaacaacactacggtcaggacacccctccagagtacaaaatggcgagcataccgcatgacattcctctcttcctcggttatggaggggcagatgcgctttctgatgtccaagatgtgaagctattgctcaacagcctcaaagatcatgatggagataagcttgtgattcagtacatagatgattatgctcatgcagattttgtcatgggtgaaaatgctaaacaagatgtgtatgatcctctcatggctttcttcaaacttcagtga

Protein Analysis

412

Amino Acids

45.38

Weight (kDa)

4.65

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 259
AciI CCGC 2 cut(s) 483, 1025
AclWI GGATC 4 cut(s) 422, 728, 898, 1202
AcsI RAATTY 4 cut(s) 219, 547, 728, 841
AcuI CTGAAG 1 cut(s) 1217
AfaI GTAC 4 cut(s) 61, 261, 1007, 1145
AflII CTTAAG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 606
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 2 cut(s) 891, 1228
AjnI CCWGG 1 cut(s) 784
AluBI AGCT 7 cut(s) 73, 227, 520, 598, 620, 1093, 1132
AluI AGCT 7 cut(s) 73, 227, 520, 598, 620, 1093, 1132
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 4 cut(s) 422, 728, 898, 1202
AoxI GGCC 1 cut(s) 823
ApeKI GCWGC 3 cut(s) 307, 680, 834
ApoI RAATTY 4 cut(s) 219, 547, 728, 841
AsiGI ACCGGT 1 cut(s) 262
Asp718I GGTACC 1 cut(s) 259
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 1 cut(s) 743
AsuC2I CCSGG 2 cut(s) 238, 250
AsuHPI GGTGA 4 cut(s) 409, 556, 654, 1193
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 743
AxyI CCTNAGG 1 cut(s) 879
BanI GGYRCC 1 cut(s) 259
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbsI GAAGAC 2 cut(s) 93, 597
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 294, 667, 821
BccI CCATC 6 cut(s) 119, 121, 188, 287, 923, 1115
BciT130I CCWGG 1 cut(s) 786
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 2 cut(s) 238, 250
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 3 cut(s) 63, 599, 866
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 764
BisI GCNGC 4 cut(s) 308, 483, 681, 835
BlsI GCNGC 4 cut(s) 309, 484, 682, 836
Bme1390I CCNGG 3 cut(s) 238, 250, 786
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 3 cut(s) 111, 261, 388
BmrFI CCNGG 3 cut(s) 238, 250, 786
BmsI GCATC 2 cut(s) 146, 1054
BpiI GAAGAC 2 cut(s) 93, 597
BpmI CTGGAG 2 cut(s) 303, 984
Bpu10I CCTNAGC 1 cut(s) 699
Bpu14I TTCGAA 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 238, 250
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 4 cut(s) 237, 382, 400, 1045
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 3 cut(s) 490, 546, 562
Bse21I CCTNAGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 693
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 4 cut(s) 237, 382, 400, 1045
BseGI GGATG 3 cut(s) 298, 460, 845
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 4 cut(s) 220, 690, 893, 929
BseNI ACTGG 3 cut(s) 490, 546, 562
BseRI GAGGAG 1 cut(s) 980
BseXI GCAGC 3 cut(s) 294, 667, 821
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 781
BshFI GGCC 1 cut(s) 825
BshNI GGYRCC 1 cut(s) 259
BshTI ACCGGT 1 cut(s) 262
BsiSI CCGG 4 cut(s) 237, 249, 263, 431
BsmAI GTCTC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 1 cut(s) 825
Bso31I GGTCTC 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 84
Bsp143I GATC 7 cut(s) 427, 502, 614, 733, 903, 1114, 1207
BspACI CCGC 2 cut(s) 483, 1025
BspANI GGCC 1 cut(s) 825
BspCNI CTCAG 4 cut(s) 219, 691, 892, 928
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 3 cut(s) 111, 261, 388
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 4 cut(s) 422, 728, 898, 1202
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 764
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 693
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 3 cut(s) 490, 546, 562
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 4 cut(s) 237, 382, 400, 1045
BssMI GATC 7 cut(s) 427, 502, 614, 733, 903, 1114, 1207
BssT1I CCWWGG 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 2 cut(s) 181, 986
Bst6I CTCTTC 1 cut(s) 1046
BstAFI CTTAAG 1 cut(s) 764
BstAPI GCANNNNNTGC 1 cut(s) 677
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 1018
BstDEI CTNAG 5 cut(s) 206, 629, 699, 879, 915
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 3 cut(s) 298, 460, 845
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 7 cut(s) 430, 505, 617, 736, 906, 1117, 1210
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 7 cut(s) 427, 502, 614, 733, 903, 1114, 1207
BstMWI GCNNNNNNNGC 4 cut(s) 578, 677, 795, 831
BstNI CCWGG 1 cut(s) 786
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 236, 248, 784
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 294, 667, 821
BstV2I GAAGAC 2 cut(s) 93, 597
Bsu36I CCTNAGG 1 cut(s) 879
BsuRI GGCC 1 cut(s) 825
BtgI CCRYGG 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 956
BtsCI GGATG 3 cut(s) 298, 460, 845
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 111, 539
Cac8I GCNNGC 1 cut(s) 1018
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 1 cut(s) 1069
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 743
Csp6I GTAC 4 cut(s) 60, 260, 1006, 1144
CspAI ACCGGT 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviQI GTAC 4 cut(s) 60, 260, 1006, 1144
DdeI CTNAG 5 cut(s) 206, 629, 699, 879, 915
DpnI GATC 7 cut(s) 429, 504, 616, 735, 905, 1116, 1209
DpnII GATC 7 cut(s) 427, 502, 614, 733, 903, 1114, 1207
Eam1104I CTCTTC 1 cut(s) 1046
EarI CTCTTC 1 cut(s) 1046
Eco130I CCWWGG 1 cut(s) 400
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 743
Eco57I CTGAAG 1 cut(s) 1217
Eco81I CCTNAGG 1 cut(s) 879
EcoRI GAATTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 784
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 308, 483, 681, 835
FokI GGATG 3 cut(s) 305, 467, 832
Fsp4HI GCNGC 4 cut(s) 308, 483, 681, 835
FspBI CTAG 3 cut(s) 63, 599, 866
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 4 cut(s) 308, 483, 681, 835
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 303, 984
HaeIII GGCC 1 cut(s) 825
HapII CCGG 4 cut(s) 237, 249, 263, 431
HhaI GCGC 1 cut(s) 1069
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HincII GTYRAC 2 cut(s) 604, 793
HindII GTYRAC 2 cut(s) 604, 793
HindIII AAGCTT 2 cut(s) 518, 1130
HinfI GANTC 3 cut(s) 282, 326, 1138
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 4 cut(s) 237, 249, 263, 431
HphI GGTGA 4 cut(s) 409, 556, 654, 1193
Hpy166II GTNNAC 2 cut(s) 604, 793
Hpy188I TCNGA 4 cut(s) 589, 654, 918, 1075
Hpy188III TCNNGA 5 cut(s) 320, 866, 989, 1001, 1118
Hpy8I GTNNAC 2 cut(s) 604, 793
HpyCH4III ACNGT 2 cut(s) 181, 986
HpyCH4V TGCA 7 cut(s) 29, 137, 214, 499, 671, 798, 1166
HpyF10VI GCNNNNNNNGC 4 cut(s) 578, 677, 795, 831
HpyF3I CTNAG 5 cut(s) 206, 629, 699, 879, 915
HspAI GCGC 1 cut(s) 1067
KpnI GGTACC 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 604
Kzo9I GATC 7 cut(s) 427, 502, 614, 733, 903, 1114, 1207
LmnI GCTCC 2 cut(s) 115, 782
Lsp1109I GCAGC 3 cut(s) 294, 667, 821
LweI GCATC 2 cut(s) 146, 1054
MaeI CTAG 3 cut(s) 63, 599, 866
MaeIII GTNAC 1 cut(s) 181
MalI GATC 7 cut(s) 429, 504, 616, 735, 905, 1116, 1209
MboI GATC 7 cut(s) 427, 502, 614, 733, 903, 1114, 1207
MboII GAAGA 6 cut(s) 98, 182, 260, 602, 1033, 1216
MfeI CAATTG 1 cut(s) 636
MluCI AATT 7 cut(s) 219, 458, 547, 636, 728, 829, 841
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 511
MseI TTAA 3 cut(s) 603, 765, 839
MspA1I CMGCKG 2 cut(s) 227, 620
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 4 cut(s) 237, 249, 263, 431
MspR9I CCNGG 3 cut(s) 238, 250, 786
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 786
MwoI GCNNNNNNNGC 4 cut(s) 578, 677, 795, 831
NciI CCSGG 2 cut(s) 238, 250
NdeII GATC 7 cut(s) 427, 502, 614, 733, 903, 1114, 1207
NlaIV GGNNCC 3 cut(s) 111, 261, 388
NspI RCATGY 1 cut(s) 610
NspV TTCGAA 1 cut(s) 84
PagI TCATGA 1 cut(s) 1117
PciI ACATGT 1 cut(s) 606
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 326, 1138
PfoI TCCNGGA 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 4 cut(s) 309, 484, 682, 836
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PscI ACATGT 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 784
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 3 cut(s) 111, 261, 388
PspPI GGNCC 1 cut(s) 743
PstI CTGCAG 1 cut(s) 31
PvuII CAGCTG 2 cut(s) 227, 620
RsaI GTAC 4 cut(s) 61, 261, 1007, 1145
RsaNI GTAC 4 cut(s) 60, 260, 1006, 1144
SaqAI TTAA 3 cut(s) 603, 765, 839
SatI GCNGC 4 cut(s) 308, 483, 681, 835
Sau3AI GATC 7 cut(s) 427, 502, 614, 733, 903, 1114, 1207
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 3 cut(s) 238, 250, 786
SfaNI GCATC 2 cut(s) 146, 1054
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 7 cut(s) 219, 458, 547, 636, 728, 829, 841
SsiI CCGC 2 cut(s) 483, 1025
SspMI CTAG 3 cut(s) 63, 599, 866
StyD4I CCNGG 3 cut(s) 236, 248, 784
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 2 cut(s) 181, 986
TaqI TCGA 2 cut(s) 84, 948
TasI AATT 7 cut(s) 219, 458, 547, 636, 728, 829, 841
TatI WGTACW 2 cut(s) 1005, 1143
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 2 cut(s) 326, 1138
Tru1I TTAA 3 cut(s) 603, 765, 839
Tru9I TTAA 3 cut(s) 603, 765, 839
TscAI CASTG 2 cut(s) 111, 546
TseI GCWGC 3 cut(s) 307, 680, 834
TspDTI ATGAA 4 cut(s) 328, 471, 682, 834
TspRI CASTG 2 cut(s) 111, 546
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 4 cut(s) 219, 547, 728, 841
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 1 cut(s) 610
XspI CTAG 3 cut(s) 63, 599, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.