Rroxscaffold_2G00091880
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000628
Physical Location & Seq
Forward (+)
13407009 .. 13408941
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091880.1

Sequence Viewer

Length: 1203 bp
ATGGCGAACATTGGTACCCCTATCATTGTAGTTGTTCTGTTCTGGGGGTTGGCAGTTGGAACTCGAACAAAGCTGTTCTCTGAAGAAGATGGGATTGCTGTTTCGGCATTGGCTCCATCTGGTAGTGATGGCATTTGTGCATCAATGGTGGAAGCACAAGGCTATCCTTGTGAAGAACACACAGTATGTGACAACAGAAGATGGCTATATACTCAGTATGCAGAGAATTCCAGGGGGAAGTCTGGGGAGACATCAAGAAACAAGATACCGGTTCTTCTACAACATGGACTCCTCATGGATGGGATAACATGGCTGCTCCTACCTCCAGACCAAGCTTTGGCATTCCTCTTGGCGGATAATGGGTATGAGGTGTGGATTGCCAATACCCGTGGAACCCAATATAGCCTCGGCCATACATCACTCACACCCGATGATCCGGCTTATTGGGAATGGTCATGGGATGAATTGGTGGCTTATGACCTCCCGGCCACATACCAATATGTGCATAACCAAGCAGGACAGAAGATTCATTATGTTGGACATTCACTGGGAACTTTGATTGCTCTTGGTGCTTTTTCAAAAGACCAGCTAGTGAACATGTTGAGATCAGCTGTCTTACTTAGCCCAATTGCTCATGTTGGTCAGATGACCTCACCCCTTGCAAGGGCTGCTGCTGAAAACTTTATTGCTGAGATAGTAACTATGTTCTTTGTTAATAGAGAGGCAATAATCAAAGTTCTTAATGCATCATGTGTGAAATCAGGCGTTGACTGCACAAACCTCTTGACCTCTTTCACAGTAAGTCTTTCTAATTTCCCGTTCACAATGAAATCACCACTGAGAAACATTGTTCTCCATATTGAATCCTACAGTTTCTGGGCAGTGATAAGAGACGGAAAAATTGAGATGTTTGACTACATTGACAAGGATAAGAACCAAAAACATTACGGGCAGGACACTCCTCCAGAGTACAAAATGGCAAGCATTCCGCATGACCTTCCTCTCTTCCTCAGTTACGGAGGGGCAGATGCGCTTTCTGATGTCCAAGATGTAAAGCTATTGCTCAACAGCCTCAAAGATCATGATGGAGATAAGCTTGTGGTTCAGTACAGAGATGATTATGCTCATGCTGATTTTGTCATGGGTGAAACTGCTAAGCGAGATGTATATGATCCTCTCATGGCTTTCTTTAAACTTCAGTGA

Protein Analysis

400

Amino Acids

44.53

Weight (kDa)

5.18

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 90 - 224 1.1e-09 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 91 - 227 6.2e-06 Alpha/beta hydrolase family
Hydrolase_4 PF12146 112 - 226 7.4e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 337
AciI CCGC 2 cut(s) 353, 989
AclWI GGATC 2 cut(s) 428, 1166
AcoI YGGCCR 2 cut(s) 409, 486
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 102, 1181
AfaI GTAC 3 cut(s) 16, 971, 1109
AfiI CCNNNNNNNGG 4 cut(s) 337, 352, 663, 664
AflIII ACRYGT 1 cut(s) 597
AgeI ACCGGT 1 cut(s) 268
AgsI TTSAA 2 cut(s) 579, 863
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 6 cut(s) 73, 335, 589, 611, 1057, 1096
AluI AGCT 6 cut(s) 73, 335, 589, 611, 1057, 1096
Alw26I GTCTC 2 cut(s) 242, 885
AlwI GGATC 2 cut(s) 428, 1166
AlwNI CAGNNNCTG 1 cut(s) 876
AoxI GGCC 2 cut(s) 409, 486
ApeKI GCWGC 3 cut(s) 313, 668, 671
ApoI RAATTY 1 cut(s) 226
AsiGI ACCGGT 1 cut(s) 268
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 1033
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 3 cut(s) 645, 825, 1157
BaeI ACNNNNGTAYC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 14
BbvI GCAGC 3 cut(s) 300, 655, 658
BccI CCATC 6 cut(s) 83, 122, 124, 195, 293, 1079
BciT130I CCWGG 1 cut(s) 232
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 2 cut(s) 242, 885
BfaI CTAG 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 868
BisI GCNGC 3 cut(s) 314, 669, 672
BlpI GCTNAGC 1 cut(s) 1155
BlsI GCNGC 3 cut(s) 315, 670, 673
Bme1390I CCNGG 2 cut(s) 232, 485
BmiI GGNNCC 3 cut(s) 16, 114, 394
BmrFI CCNGG 2 cut(s) 232, 485
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 3 cut(s) 149, 755, 1018
BmuI ACTGGG 1 cut(s) 557
BpmI CTGGAG 2 cut(s) 309, 948
Bpu1102I GCTNAGC 1 cut(s) 1155
BpuMI CCSGG 1 cut(s) 485
BsaJI CCNNGG 3 cut(s) 231, 388, 406
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 4 cut(s) 337, 352, 663, 664
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 3 cut(s) 231, 388, 406
BseGI GGATG 2 cut(s) 304, 466
BseLI CCNNNNNNNGG 4 cut(s) 337, 352, 663, 664
BseMII CTCAG 4 cut(s) 227, 681, 830, 1024
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 2 cut(s) 281, 951
BseXI GCAGC 3 cut(s) 300, 655, 658
BsgI GTGCAG 1 cut(s) 757
BshFI GGCC 2 cut(s) 411, 488
BshNI GGYRCC 1 cut(s) 14
BshTI ACCGGT 1 cut(s) 268
BsiSI CCGG 3 cut(s) 269, 437, 485
BslI CCNNNNNNNGG 4 cut(s) 337, 352, 663, 664
BsmAI GTCTC 2 cut(s) 242, 885
BsmBI CGTCTC 1 cut(s) 885
BsmI GAATGC 2 cut(s) 341, 984
BsnI GGCC 2 cut(s) 411, 488
Bsp143I GATC 4 cut(s) 433, 605, 1078, 1171
Bsp1720I GCTNAGC 1 cut(s) 1155
BspACI CCGC 2 cut(s) 353, 989
BspANI GGCC 2 cut(s) 411, 488
BspCNI CTCAG 4 cut(s) 226, 682, 831, 1023
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 3 cut(s) 16, 114, 394
BspPI GGATC 2 cut(s) 428, 1166
BspT107I GGYRCC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 1 cut(s) 552
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 231, 388, 406
BssMI GATC 4 cut(s) 433, 605, 1078, 1171
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 184, 799, 872
Bst6I CTCTTC 1 cut(s) 1010
BstAPI GCANNNNNTGC 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 982
BstDEI CTNAG 6 cut(s) 213, 620, 690, 839, 1010, 1155
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 2 cut(s) 304, 466
BstHHI GCGC 1 cut(s) 1033
BstKTI GATC 4 cut(s) 436, 608, 1081, 1174
BstMAI GTCTC 2 cut(s) 242, 885
BstMBI GATC 4 cut(s) 433, 605, 1078, 1171
BstMWI GCNNNNNNNGC 4 cut(s) 104, 569, 668, 771
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 2 cut(s) 230, 483
BstSFI CTRYAG 1 cut(s) 868
BstV1I GCAGC 3 cut(s) 300, 655, 658
BsuRI GGCC 2 cut(s) 411, 488
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 304, 466
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 545, 836, 888
Cac8I GCNNGC 1 cut(s) 982
CaiI CAGNNNCTG 1 cut(s) 876
CciI TCATGA 1 cut(s) 1081
CfoI GCGC 1 cut(s) 1033
Cfr10I RCCGGY 1 cut(s) 268
Csp6I GTAC 3 cut(s) 15, 970, 1108
CspAI ACCGGT 1 cut(s) 268
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviQI GTAC 3 cut(s) 15, 970, 1108
DdeI CTNAG 6 cut(s) 213, 620, 690, 839, 1010, 1155
DpnI GATC 4 cut(s) 435, 607, 1080, 1173
DpnII GATC 4 cut(s) 433, 605, 1078, 1171
DraI TTTAAA 1 cut(s) 1192
EaeI YGGCCR 2 cut(s) 409, 486
Eam1104I CTCTTC 1 cut(s) 1010
EarI CTCTTC 1 cut(s) 1010
EciI GGCGGA 1 cut(s) 368
Eco57I CTGAAG 2 cut(s) 102, 1181
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 748
Esp3I CGTCTC 1 cut(s) 885
Fnu4HI GCNGC 3 cut(s) 314, 669, 672
FokI GGATG 2 cut(s) 311, 473
Fsp4HI GCNGC 3 cut(s) 314, 669, 672
FspBI CTAG 1 cut(s) 590
GlaI GCGC 1 cut(s) 1032
GluI GCNGC 3 cut(s) 314, 669, 672
GsuI CTGGAG 2 cut(s) 309, 948
HaeIII GGCC 2 cut(s) 411, 488
HapII CCGG 3 cut(s) 269, 437, 485
HhaI GCGC 1 cut(s) 1033
Hin6I GCGC 1 cut(s) 1031
HinP1I GCGC 1 cut(s) 1031
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 2 cut(s) 333, 1094
HinfI GANTC 3 cut(s) 288, 526, 863
HpaII CCGG 3 cut(s) 269, 437, 485
HphI GGTGA 3 cut(s) 645, 825, 1157
Hpy166II GTNNAC 3 cut(s) 595, 769, 822
Hpy188I TCNGA 3 cut(s) 82, 645, 1039
Hpy188III TCNNGA 5 cut(s) 255, 326, 784, 965, 1082
Hpy8I GTNNAC 3 cut(s) 595, 769, 822
HpyAV CCTTC 1 cut(s) 1007
HpyCH4III ACNGT 3 cut(s) 184, 799, 872
HpyCH4V TGCA 6 cut(s) 140, 221, 505, 662, 746, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 569, 668, 771
HpyF3I CTNAG 6 cut(s) 213, 620, 690, 839, 1010, 1155
HspAI GCGC 1 cut(s) 1031
KpnI GGTACC 1 cut(s) 18
Kzo9I GATC 4 cut(s) 433, 605, 1078, 1171
LmnI GCTCC 2 cut(s) 118, 321
Lsp1109I GCAGC 3 cut(s) 300, 655, 658
LweI GCATC 3 cut(s) 149, 755, 1018
MaeI CTAG 1 cut(s) 590
MaeIII GTNAC 3 cut(s) 188, 697, 1013
MalI GATC 4 cut(s) 435, 607, 1080, 1173
MboI GATC 4 cut(s) 433, 605, 1078, 1171
MboII GAAGA 7 cut(s) 95, 98, 185, 210, 266, 535, 997
MfeI CAATTG 1 cut(s) 627
MluCI AATT 5 cut(s) 226, 464, 627, 811, 900
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 2 cut(s) 37, 517
Mph1103I ATGCAT 1 cut(s) 748
MseI TTAA 3 cut(s) 714, 741, 1191
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 3 cut(s) 269, 437, 485
MspR9I CCNGG 2 cut(s) 232, 485
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 2 cut(s) 341, 984
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 4 cut(s) 104, 569, 668, 771
NciI CCSGG 1 cut(s) 485
NdeII GATC 4 cut(s) 433, 605, 1078, 1171
NlaIV GGNNCC 3 cut(s) 16, 114, 394
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 1 cut(s) 601
PagI TCATGA 1 cut(s) 1081
PciI ACATGT 1 cut(s) 597
PctI GAATGC 2 cut(s) 341, 984
PfeI GAWTC 2 cut(s) 526, 863
PflMI CCANNNNNTGG 1 cut(s) 337
PinAI ACCGGT 1 cut(s) 268
PkrI GCNGC 3 cut(s) 315, 670, 673
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PscI ACATGT 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 3 cut(s) 16, 114, 394
PstNI CAGNNNCTG 1 cut(s) 876
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 3 cut(s) 16, 971, 1109
RsaNI GTAC 3 cut(s) 15, 970, 1108
SaqAI TTAA 3 cut(s) 714, 741, 1191
SatI GCNGC 3 cut(s) 314, 669, 672
Sau3AI GATC 4 cut(s) 433, 605, 1078, 1171
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 2 cut(s) 232, 485
SfaNI GCATC 3 cut(s) 149, 755, 1018
SfcI CTRYAG 1 cut(s) 868
Sse9I AATT 5 cut(s) 226, 464, 627, 811, 900
SsiI CCGC 2 cut(s) 353, 989
SspMI CTAG 1 cut(s) 590
StyD4I CCNGG 2 cut(s) 230, 483
TaaI ACNGT 3 cut(s) 184, 799, 872
TaqI TCGA 1 cut(s) 64
TasI AATT 5 cut(s) 226, 464, 627, 811, 900
TatI WGTACW 2 cut(s) 969, 1107
TfiI GAWTC 2 cut(s) 526, 863
Tru1I TTAA 3 cut(s) 714, 741, 1191
Tru9I TTAA 3 cut(s) 714, 741, 1191
TscAI CASTG 3 cut(s) 552, 843, 888
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 3 cut(s) 313, 668, 671
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 477, 518, 842
TspGWI ACGGA 2 cut(s) 909, 1032
TspRI CASTG 3 cut(s) 552, 843, 888
Van91I CCANNNNNTGG 1 cut(s) 337
XapI RAATTY 1 cut(s) 226
XceI RCATGY 1 cut(s) 601
XspI CTAG 1 cut(s) 590
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.