Rmu_co8368271.1_g000001
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8368271.1
OG0000628
Physical Location & Seq
Forward (+)
1 .. 911
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8368271.1_g000001.1.cds

Sequence Viewer

Length: 499 bp
agagcccgtggctgaattcttagatcatctatgtgccactccaggagttccatgttacgacatattctcactactcaccggcaaaaattgttgtctcaatgcttccactgttgatctcttcttggatcatcagcctcagtcaacatcaaccaagaacctggtgcacctgtctcaagttgtacgaaatggcattttgacaaaatacgaccacgggagatcgtacactaattatatgcactatggctcatttttcgctccgcattacgatctttctaaaattcccaaccacctgcccatgttcatcacctacggcggccaagatgcgctctccgatgaactcgacgtgttgcatttacttgatcattttaagtctcacgacgcgggaaagcttgtggttgatttcatccccgagtatgcccatttcgattttgtcgcggggatcaatgccaaggaccttgtgtataataaagtgatttctttcttcaaccagcaacagtaa

Protein Analysis

165

Amino Acids

18.65

Weight (kDa)

5.66

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
AccII CGCG 2 cut(s) 381, 435
AciI CCGC 4 cut(s) 258, 313, 381, 435
AclWI GGATC 2 cut(s) 133, 447
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 2 cut(s) 15, 277
AfaI GTAC 2 cut(s) 181, 222
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 1 cut(s) 485
AjiI CACGTC 1 cut(s) 344
AjnI CCWGG 2 cut(s) 41, 157
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 3 cut(s) 99, 175, 376
Alw44I GTGCAC 1 cut(s) 162
AlwI GGATC 2 cut(s) 133, 447
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 1 cut(s) 314
ApaLI GTGCAC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 15, 277
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 68, 296
AvaI CYCGRG 1 cut(s) 408
AvaII GGWCC 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 326
BciT130I CCWGG 2 cut(s) 43, 159
BclI TGATCA 1 cut(s) 359
BcoDI GTCTC 3 cut(s) 99, 175, 376
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 43, 159
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 408
BmgBI CACGTC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 2 cut(s) 43, 159
BmsI GCATC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 7, 209, 448
Bse118I RCCGGY 1 cut(s) 78
BseBI CCWGG 2 cut(s) 43, 159
BseDI CCNNGG 3 cut(s) 7, 209, 448
BseGI GGATG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 381, 435
BshFI GGCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 1 cut(s) 79
BsmAI GTCTC 3 cut(s) 99, 175, 376
BsnI GGCC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 7, 166
Bsp143I GATC 7 cut(s) 23, 113, 125, 216, 266, 359, 439
BspACI CCGC 4 cut(s) 258, 313, 381, 435
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 2 cut(s) 381, 435
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 2 cut(s) 133, 447
BsrFI RCCGGY 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 7, 209, 448
BssMI GATC 7 cut(s) 23, 113, 125, 216, 266, 359, 439
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 2 cut(s) 43, 159
Bst4CI ACNGT 2 cut(s) 110, 496
Bst6I CTCTTC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 20, 136
BstDSI CCRYGG 2 cut(s) 7, 209
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 2 cut(s) 381, 435
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 7 cut(s) 26, 116, 128, 219, 269, 362, 442
BstMAI GTCTC 3 cut(s) 99, 175, 376
BstMBI GATC 7 cut(s) 23, 113, 125, 216, 266, 359, 439
BstNI CCWGG 2 cut(s) 43, 159
BstSCI CCNGG 2 cut(s) 41, 157
BstSLI GKGCMC 1 cut(s) 166
BstUI CGCG 2 cut(s) 381, 435
BstXI CCANNNNNNTGG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 2 cut(s) 7, 209
BtrI CACGTC 1 cut(s) 344
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 452
CseI GACGC 1 cut(s) 387
CsiI ACCWGGT 1 cut(s) 157
Csp6I GTAC 2 cut(s) 180, 221
CviAII CATG 2 cut(s) 52, 296
CviJI RGCY 6 cut(s) 5, 12, 134, 244, 316, 389
CviKI_1 RGCY 6 cut(s) 5, 12, 134, 244, 316, 389
CviQI GTAC 2 cut(s) 180, 221
DdeI CTNAG 2 cut(s) 20, 136
DpnI GATC 7 cut(s) 25, 115, 127, 218, 268, 361, 441
DpnII GATC 7 cut(s) 23, 113, 125, 216, 266, 359, 439
EaeI YGGCCR 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 41, 157
EcoT14I CCWWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 2 cut(s) 55, 299
FaiI YATR 9 cut(s) 32, 53, 63, 232, 234, 241, 297, 415, 463
FatI CATG 2 cut(s) 51, 295
FauI CCCGC 2 cut(s) 374, 428
FbaI TGATCA 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 314
GlaI GCGC 1 cut(s) 325
GluI GCNGC 1 cut(s) 314
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 79
HgaI GACGC 1 cut(s) 387
HhaI GCGC 1 cut(s) 326
Hin1II CATG 2 cut(s) 55, 299
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 387
HpaII CCGG 1 cut(s) 79
HphI GGTGA 2 cut(s) 68, 296
Hpy166II GTNNAC 3 cut(s) 142, 164, 223
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 3 cut(s) 142, 164, 223
Hpy99I CGWCG 2 cut(s) 345, 381
HpyCH4III ACNGT 2 cut(s) 110, 496
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 164, 236, 350
HpyF3I CTNAG 2 cut(s) 20, 136
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 2 cut(s) 55, 299
HspAI GCGC 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 359
Kzo9I GATC 7 cut(s) 23, 113, 125, 216, 266, 359, 439
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 7 cut(s) 28, 55, 92, 144, 171, 180, 303
LweI GCATC 1 cut(s) 311
MabI ACCWGGT 1 cut(s) 157
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 54
MalI GATC 7 cut(s) 25, 115, 127, 218, 268, 361, 441
MboI GATC 7 cut(s) 23, 113, 125, 216, 266, 359, 439
MboII GAAGA 2 cut(s) 110, 473
MhlI GDGCHC 2 cut(s) 7, 166
MluCI AATT 4 cut(s) 15, 86, 227, 277
MnlI CCTC 1 cut(s) 145
MseI TTAA 1 cut(s) 367
MslI CAYNNNNRTG 1 cut(s) 31
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 43, 159
MvaI CCWGG 2 cut(s) 43, 159
MvnI CGCG 2 cut(s) 381, 435
NdeII GATC 7 cut(s) 23, 113, 125, 216, 266, 359, 439
NlaIII CATG 2 cut(s) 55, 299
PaqCI CACCTGC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 41, 157
PspGI CCWGG 2 cut(s) 41, 157
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
RsaI GTAC 2 cut(s) 181, 222
RsaNI GTAC 2 cut(s) 180, 221
RseI CAYNNNNRTG 1 cut(s) 31
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 7 cut(s) 23, 113, 125, 216, 266, 359, 439
Sau96I GGNCC 1 cut(s) 452
ScrFI CCNGG 2 cut(s) 43, 159
SduI GDGCHC 2 cut(s) 7, 166
SetI ASST 7 cut(s) 160, 169, 292, 309, 346, 391, 457
SexAI ACCWGGT 1 cut(s) 157
SfaNI GCATC 1 cut(s) 311
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 4 cut(s) 15, 86, 227, 277
SsiI CCGC 4 cut(s) 258, 313, 381, 435
StyD4I CCNGG 2 cut(s) 41, 157
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 2 cut(s) 110, 496
TaiI ACGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 340, 424
TasI AATT 4 cut(s) 15, 86, 227, 277
TauI GCSGC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TscAI CASTG 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 290, 349, 392
TspRI CASTG 1 cut(s) 113
VneI GTGCAC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 2 cut(s) 15, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.