Rh2DG552400
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
78163551 .. 78166802
3252 bp
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UTR
Exon/CDS
Intron
Rh2DG552400.1

Sequence Viewer

Length: 510 bp
ATGAAGATGGCGAACATTGGTACCCCTATCATTGTAGTTGTTCTGTTCTGGGGGTTGGCAGTTGCAACTCGAACAAAGCTGTTCTCTGAAGAAGATGGGATTGCTGTTTCGGCGTTGGCTCCATCTGGTAGTGATGGCATTTGTGCATCAATGGTGGAAGCACAAGGCTATCCTTGTGAAGAACACACAATAGTAACTATGTTCTTTGTTAATAGAGAGGCAATAATCAAAGTTCTTAATGCATCATGTGCGAAATCAGGCGTTGACTGCACAAACCTCTTGACGTCTTTCACCGTTGTTCTATTCTGGGGATTGGCAGTTGGTACTAGAACAAGGCTATTCTCTTTCGAAGACAGCATGGTTTCAGCAGTGGCTCCATCTGGTAGTGATGGTATCTGTGCATCAATGGTGCTATCACAAGGCTACCCTTGTGAAGAACATACAGTATGTGCCTTCCCTTCAGTTCAATTTGTCAAGAGCTGTGATTTTTGTTTAGCAAACGCGGACTGA

Protein Analysis

169

Amino Acids

17.91

Weight (kDa)

4.68

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000628)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 287
Acc65I GGTACC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 20
AccII CGCG 1 cut(s) 503
AciI CCGC 1 cut(s) 503
AcuI CTGAAG 2 cut(s) 108, 444
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 2 cut(s) 22, 325
AgsI TTSAA 1 cut(s) 467
AluBI AGCT 2 cut(s) 79, 480
AluI AGCT 2 cut(s) 79, 480
Asp718I GGTACC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 348
BaeI ACNNNNGTAYC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 357
BccI CCATC 5 cut(s) 89, 128, 130, 383, 385
BfaI CTAG 1 cut(s) 327
BmiI GGNNCC 3 cut(s) 22, 120, 375
BmsI GCATC 3 cut(s) 155, 251, 410
BpiI GAAGAC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 503
BshNI GGYRCC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 348
BspACI CCGC 1 cut(s) 503
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 3 cut(s) 22, 120, 375
BspT104I TTCGAA 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 295, 445
BstACI GRCGYC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 348
BstFNI CGCG 1 cut(s) 503
BstMWI GCNNNNNNNGC 3 cut(s) 110, 248, 267
BstUI CGCG 1 cut(s) 503
BstV2I GAAGAC 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
Csp6I GTAC 2 cut(s) 21, 324
CviAII CATG 2 cut(s) 246, 358
CviJI RGCY 7 cut(s) 79, 119, 168, 337, 374, 423, 480
CviKI_1 RGCY 7 cut(s) 79, 119, 168, 337, 374, 423, 480
CviQI GTAC 2 cut(s) 21, 324
Eco57I CTGAAG 2 cut(s) 108, 444
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 2 cut(s) 249, 361
FaiI YATR 5 cut(s) 200, 247, 359, 441, 448
FatI CATG 2 cut(s) 245, 357
FspBI CTAG 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 2 cut(s) 249, 361
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 280, 475
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 463, 468
HpyCH4III ACNGT 2 cut(s) 295, 445
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 5 cut(s) 65, 146, 242, 270, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 248, 267
HpySE526I ACGT 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 2 cut(s) 249, 361
KpnI GGTACC 1 cut(s) 24
LmnI GCTCC 2 cut(s) 124, 379
LpnPI CCDG 5 cut(s) 34, 111, 243, 292, 366
LweI GCATC 3 cut(s) 155, 251, 410
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 193
MboII GAAGA 6 cut(s) 16, 101, 104, 191, 362, 446
MluCI AATT 1 cut(s) 467
MnlI CCTC 2 cut(s) 211, 287
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 2 cut(s) 210, 237
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 3 cut(s) 110, 248, 267
NlaIII CATG 2 cut(s) 249, 361
NlaIV GGNNCC 3 cut(s) 22, 120, 375
NsiI ATGCAT 1 cut(s) 244
NspV TTCGAA 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 22, 120, 375
RsaI GTAC 2 cut(s) 22, 325
RsaNI GTAC 2 cut(s) 21, 324
SaqAI TTAA 2 cut(s) 210, 237
SetI ASST 4 cut(s) 81, 279, 287, 482
SfaNI GCATC 3 cut(s) 155, 251, 410
SfuI TTCGAA 1 cut(s) 348
Sse9I AATT 1 cut(s) 467
SsiI CCGC 1 cut(s) 503
SspMI CTAG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 295, 445
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 70, 348
TasI AATT 1 cut(s) 467
Tru1I TTAA 2 cut(s) 210, 237
Tru9I TTAA 2 cut(s) 210, 237
TscAI CASTG 1 cut(s) 375
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 375
XspI CTAG 1 cut(s) 327
ZraI GACGTC 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.