RchiOBHm_Chr2g0157881
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000628
Physical Location & Seq
Reverse (-)
74219156 .. 74221196
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52660

Sequence Viewer

Length: 1227 bp
ATGGCGAACATTGGTACCCCTATCATTGTAGTTGTTCTGTTCTGGGGGTTGGCAGTTGCAACTCGAACAAAGCTGTTCTCTGAAGAAGATGGGATTGCTGTTTCGGCGTTGGCTCCATCTGGTAGTGATGGCATTTGTGCATCAATGGTGGAAGCACAAGGCTATCCTTGTGAAGAACACACAGTGACGACAGAAGATGGCTATATACTCAGTATGCAGAGAATTCCAGGGGGGAAGTCTGGGGAGACATCAGGAAACAAGATACCGGTTCTTCTACAACATGGACTCCTCATGGATGGGATAACATGGCTGCTCCTACCTCCAGACCAAGCTTTGGCATTCCTCTTGGCGGATAATGGGTATGAGGTGTGGATTGCCAATACCCGTGGAACCCAATATAGCCTCGGCCATACATCACTCACACCCGATGATCCGGCTTATTGGGAATGGTCATGGGATGAATTGGTGGTTTATGACCTCCCGGCCACATACCAATATGTGCATAACCAAGCAGGACAGAAGATTCATTATGTTGGACATTCACTGGGAACTTTGATTGCTCTTGGTGCTTTTTCAAAAGACCAGCTAGTGAACATGTTGAGATCAGCTGTCTTACTTAGCCCAATTGCTCATGTTGGTCAGATGACCTCACCCCTTGCAAGAGCTGCTGCTGAAAACTTTATTGCTGAGGCTTTATACAAGGCAGGTTATAGAGAATTTAATCCACGATTAGAGGCAATAATCAAAGTTCTTAATGCATCATGTGCGAAATCAGGCGTTGACTGCACAAACCTCTTGACGTCTTTCACCGGCCAGAATTGCTGCTTAAATCCATCTATTGTACAAGTCTTTCTAGCTCATGAGCCTCAGGCATCTGCAACTAAAAACATGATCCATATCTCTCAGATGATAAGAGACGGAAAAGTTGCGATGTTTGACTACATTGACAAGGATAAGAACCAAAAACATTACAGGCAGGACACTCCTCCAGAGTACAAAATGGCAAGCATTCCGCATGACCTTCCTCTCTTCCTCAGTTACGGAGGGGCAGATGCGCTTTCTGATGTCCAAGATGTAAAGCTATTGCTCAACAGCCTCAAAGATCATGATGGAGATAAGCTTGTGGTTCAGTACAGAGATGATTATGCTCATGCTGATTTTGTCATGGGTGAAACTGCTAAGCGAGATGTATATGATCCTCTCATGGCATTCTTTAAACTTCAGTGA

Protein Analysis

408

Amino Acids

44.88

Weight (kDa)

5.17

Isoelectric Point (pI)

23.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 47 - 105 7.1e-22 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 89 - 227 3.8e-10 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 90 - 229 1.1e-06 Alpha/beta hydrolase family
Hydrolase_4 PF12146 111 - 225 3.8e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 803
Acc36I ACCTGC 1 cut(s) 695
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 334
AciI CCGC 2 cut(s) 350, 1013
AclWI GGATC 3 cut(s) 425, 886, 1190
AcoI YGGCCR 3 cut(s) 406, 483, 811
AcsI RAATTY 2 cut(s) 222, 716
AcuI CTGAAG 2 cut(s) 102, 1205
AcyI GRCGYC 1 cut(s) 800
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 4 cut(s) 16, 843, 995, 1133
AfiI CCNNNNNNNGG 2 cut(s) 334, 349
AflIII ACRYGT 1 cut(s) 594
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 1 cut(s) 576
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 8 cut(s) 73, 332, 586, 608, 665, 857, 1081, 1120
AluI AGCT 8 cut(s) 73, 332, 586, 608, 665, 857, 1081, 1120
Alw26I GTCTC 2 cut(s) 239, 909
AlwI GGATC 3 cut(s) 425, 886, 1190
AoxI GGCC 3 cut(s) 406, 483, 811
ApeKI GCWGC 4 cut(s) 310, 665, 668, 822
ApoI RAATTY 2 cut(s) 222, 716
AsiGI ACCGGT 1 cut(s) 265
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 1057
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 642, 799, 1181
AxyI CCTNAGG 1 cut(s) 867
BaeI ACNNNNGTAYC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 4 cut(s) 297, 652, 655, 809
BccI CCATC 7 cut(s) 83, 122, 124, 191, 290, 841, 1103
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 2 cut(s) 239, 909
BfaI CTAG 2 cut(s) 587, 854
BfuAI ACCTGC 1 cut(s) 695
BisI GCNGC 4 cut(s) 311, 666, 669, 823
BlpI GCTNAGC 1 cut(s) 1179
BlsI GCNGC 4 cut(s) 312, 667, 670, 824
Bme1390I CCNGG 2 cut(s) 228, 482
BmiI GGNNCC 3 cut(s) 16, 114, 391
BmrFI CCNGG 2 cut(s) 228, 482
BmrI ACTGGG 1 cut(s) 554
BmsI GCATC 4 cut(s) 149, 767, 881, 1042
BmuI ACTGGG 1 cut(s) 554
BpmI CTGGAG 2 cut(s) 306, 972
Bpu10I CCTNAGC 1 cut(s) 687
Bpu1102I GCTNAGC 1 cut(s) 1179
BpuMI CCSGG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 896
BsaHI GRCGYC 1 cut(s) 800
BsaJI CCNNGG 3 cut(s) 227, 385, 403
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 349
Bse118I RCCGGY 2 cut(s) 265, 809
Bse1I ACTGG 1 cut(s) 549
Bse21I CCTNAGG 1 cut(s) 867
Bse8I GATNNNNATC 1 cut(s) 896
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 227, 385, 403
BseGI GGATG 2 cut(s) 301, 463
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 2 cut(s) 334, 349
BseMII CTCAG 5 cut(s) 223, 678, 881, 917, 1048
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 2 cut(s) 278, 975
BseXI GCAGC 4 cut(s) 297, 652, 655, 809
BsgI GTGCAG 1 cut(s) 769
BshFI GGCC 3 cut(s) 408, 485, 813
BshNI GGYRCC 1 cut(s) 14
BshTI ACCGGT 1 cut(s) 265
BsiSI CCGG 4 cut(s) 266, 434, 482, 810
BslI CCNNNNNNNGG 2 cut(s) 334, 349
BsmAI GTCTC 2 cut(s) 239, 909
BsmBI CGTCTC 1 cut(s) 909
BsmI GAATGC 3 cut(s) 338, 1008, 1208
BsnI GGCC 3 cut(s) 408, 485, 813
Bsp1407I TGTACA 1 cut(s) 841
Bsp143I GATC 5 cut(s) 430, 602, 891, 1102, 1195
Bsp1720I GCTNAGC 1 cut(s) 1179
BspACI CCGC 2 cut(s) 350, 1013
BspANI GGCC 3 cut(s) 408, 485, 813
BspCNI CTCAG 5 cut(s) 222, 679, 880, 916, 1047
BspHI TCATGA 2 cut(s) 859, 1105
BspLI GGNNCC 3 cut(s) 16, 114, 391
BspMI ACCTGC 1 cut(s) 695
BspPI GGATC 3 cut(s) 425, 886, 1190
BspT107I GGYRCC 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 265, 809
BsrGI TGTACA 1 cut(s) 841
BsrI ACTGG 1 cut(s) 549
BssAI RCCGGY 2 cut(s) 265, 809
BssECI CCNNGG 3 cut(s) 227, 385, 403
BssMI GATC 5 cut(s) 430, 602, 891, 1102, 1195
BssNI GRCGYC 1 cut(s) 800
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 1034
BstACI GRCGYC 1 cut(s) 800
BstAPI GCANNNNNTGC 2 cut(s) 665, 764
BstAUI TGTACA 1 cut(s) 841
BstC8I GCNNGC 1 cut(s) 1006
BstDEI CTNAG 7 cut(s) 209, 617, 687, 867, 903, 1034, 1179
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 2 cut(s) 301, 463
BstHHI GCGC 1 cut(s) 1057
BstKTI GATC 5 cut(s) 433, 605, 894, 1105, 1198
BstMAI GTCTC 2 cut(s) 239, 909
BstMBI GATC 5 cut(s) 430, 602, 891, 1102, 1195
BstMWI GCNNNNNNNGC 6 cut(s) 104, 566, 665, 764, 783, 819
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 226, 480
BstV1I GCAGC 4 cut(s) 297, 652, 655, 809
Bsu36I CCTNAGG 1 cut(s) 867
BsuRI GGCC 3 cut(s) 408, 485, 813
BtgI CCRYGG 1 cut(s) 385
BtgZI GCGATG 1 cut(s) 944
BtsCI GGATG 2 cut(s) 301, 463
BtsIMutI CAGTG 2 cut(s) 189, 542
BveI ACCTGC 1 cut(s) 695
Cac8I GCNNGC 1 cut(s) 1006
CciI TCATGA 2 cut(s) 859, 1105
CfoI GCGC 1 cut(s) 1057
Cfr10I RCCGGY 2 cut(s) 265, 809
Csp6I GTAC 4 cut(s) 15, 842, 994, 1132
CspAI ACCGGT 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviQI GTAC 4 cut(s) 15, 842, 994, 1132
DdeI CTNAG 7 cut(s) 209, 617, 687, 867, 903, 1034, 1179
DpnI GATC 5 cut(s) 432, 604, 893, 1104, 1197
DpnII GATC 5 cut(s) 430, 602, 891, 1102, 1195
DraI TTTAAA 1 cut(s) 1216
DraIII CACNNNGTG 1 cut(s) 184
EaeI YGGCCR 3 cut(s) 406, 483, 811
Eam1104I CTCTTC 1 cut(s) 1034
EarI CTCTTC 1 cut(s) 1034
EciI GGCGGA 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 102, 1205
Eco81I CCTNAGG 1 cut(s) 867
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 760
Esp3I CGTCTC 1 cut(s) 909
Fnu4HI GCNGC 4 cut(s) 311, 666, 669, 823
FokI GGATG 2 cut(s) 308, 470
Fsp4HI GCNGC 4 cut(s) 311, 666, 669, 823
FspBI CTAG 2 cut(s) 587, 854
GlaI GCGC 1 cut(s) 1056
GluI GCNGC 4 cut(s) 311, 666, 669, 823
GsuI CTGGAG 2 cut(s) 306, 972
HaeIII GGCC 3 cut(s) 408, 485, 813
HapII CCGG 4 cut(s) 266, 434, 482, 810
HhaI GCGC 1 cut(s) 1057
Hin1I GRCGYC 1 cut(s) 800
Hin6I GCGC 1 cut(s) 1055
HinP1I GCGC 1 cut(s) 1055
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 2 cut(s) 330, 1118
HinfI GANTC 2 cut(s) 285, 523
HpaII CCGG 4 cut(s) 266, 434, 482, 810
HphI GGTGA 3 cut(s) 642, 799, 1181
Hpy166II GTNNAC 2 cut(s) 592, 781
Hpy188I TCNGA 4 cut(s) 82, 642, 906, 1063
Hpy188III TCNNGA 6 cut(s) 252, 323, 796, 860, 989, 1106
Hpy8I GTNNAC 2 cut(s) 592, 781
HpyAV CCTTC 1 cut(s) 1031
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 800
HpyCH4V TGCA 8 cut(s) 59, 140, 217, 502, 659, 758, 786, 878
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 566, 665, 764, 783, 819
HpyF3I CTNAG 7 cut(s) 209, 617, 687, 867, 903, 1034, 1179
HpySE526I ACGT 1 cut(s) 800
Hsp92I GRCGYC 1 cut(s) 800
HspAI GCGC 1 cut(s) 1055
KpnI GGTACC 1 cut(s) 18
Kzo9I GATC 5 cut(s) 430, 602, 891, 1102, 1195
LmnI GCTCC 2 cut(s) 118, 318
Lsp1109I GCAGC 4 cut(s) 297, 652, 655, 809
LweI GCATC 4 cut(s) 149, 767, 881, 1042
MaeI CTAG 2 cut(s) 587, 854
MaeII ACGT 1 cut(s) 800
MaeIII GTNAC 2 cut(s) 184, 1037
MalI GATC 5 cut(s) 432, 604, 893, 1104, 1197
MboI GATC 5 cut(s) 430, 602, 891, 1102, 1195
MboII GAAGA 7 cut(s) 95, 98, 185, 206, 263, 532, 1021
MfeI CAATTG 1 cut(s) 624
MluCI AATT 5 cut(s) 222, 461, 624, 716, 817
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 514
Mph1103I ATGCAT 1 cut(s) 760
MseI TTAA 4 cut(s) 720, 753, 827, 1215
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 4 cut(s) 266, 434, 482, 810
MspR9I CCNGG 2 cut(s) 228, 482
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 3 cut(s) 338, 1008, 1208
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 6 cut(s) 104, 566, 665, 764, 783, 819
NciI CCSGG 1 cut(s) 482
NdeII GATC 5 cut(s) 430, 602, 891, 1102, 1195
NlaIV GGNNCC 3 cut(s) 16, 114, 391
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 760
NspI RCATGY 1 cut(s) 598
PagI TCATGA 2 cut(s) 859, 1105
PciI ACATGT 1 cut(s) 594
PctI GAATGC 3 cut(s) 338, 1008, 1208
PfeI GAWTC 1 cut(s) 523
PflMI CCANNNNNTGG 1 cut(s) 334
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 4 cut(s) 312, 667, 670, 824
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PscI ACATGT 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 16, 114, 391
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 4 cut(s) 16, 843, 995, 1133
RsaNI GTAC 4 cut(s) 15, 842, 994, 1132
SaqAI TTAA 4 cut(s) 720, 753, 827, 1215
SatI GCNGC 4 cut(s) 311, 666, 669, 823
Sau3AI GATC 5 cut(s) 430, 602, 891, 1102, 1195
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 228, 482
SfaNI GCATC 4 cut(s) 149, 767, 881, 1042
Sse9I AATT 5 cut(s) 222, 461, 624, 716, 817
SsiI CCGC 2 cut(s) 350, 1013
SspMI CTAG 2 cut(s) 587, 854
StyD4I CCNGG 2 cut(s) 226, 480
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 803
TaqI TCGA 1 cut(s) 64
TasI AATT 5 cut(s) 222, 461, 624, 716, 817
TatI WGTACW 3 cut(s) 841, 993, 1131
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 4 cut(s) 720, 753, 827, 1215
Tru9I TTAA 4 cut(s) 720, 753, 827, 1215
TscAI CASTG 2 cut(s) 189, 549
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 4 cut(s) 310, 665, 668, 822
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 474, 515
TspGWI ACGGA 2 cut(s) 933, 1056
TspRI CASTG 2 cut(s) 189, 549
Van91I CCANNNNNTGG 1 cut(s) 334
XapI RAATTY 2 cut(s) 222, 716
XceI RCATGY 1 cut(s) 598
XspI CTAG 2 cut(s) 587, 854
ZraI GACGTC 1 cut(s) 801
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.