Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012978

Physical Location & Seq

Genomic Coordinates Reverse (-)

21475097 .. 21477783

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G209000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCAGCGACTTAGAGGCGCAGGGACCGTAATTTCGCGCTCTCTAGCCGTGACCCAGTTAAGGAAGAAAGCTTTCAGATCATGGGCAGCTGTTCAGGACACTTATTTTTCAACCAAGGATATATTTGAAACGCATAAGGTTGTATTTACAGTTGGAACTTCCATAGCTTCAGTCGCCACAGCATGGTTTGGATATACTATACGTCATGTACATGAATCAAGAGTTGATCAAAGGCTCGAATCAATCGAAAAAGCTCAGATGAAAAACAATCATAATCTGGAACATTCGGAAATTAGAAACATTGTTAATTCTGGAAGTATTGGTATTCCTTCATGCATAGCCACAGCCGGAACCACTTTGGTTGTCGGTTACGCTTTGGGTTGGCGAGGTGGAAGGTGGTATGCAAATAGGAAGTTCAGAAGGGAGCAGATGAAATTGCTAGGGCAAATTAAACCTAAAAGGTGGCAATTGCTCAGGAGATCATTGATCAGACCAAGAACTCAAGACAATGCAGTCAAAACTTTGGAGAAGATAAAGGACACTCATACCCCACCTAATTTTGGAGCATCGCACCAATCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.08

Weight (kDa)

10.83

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04985 AT1G04985
fragaria_vesca	FvH4_6g41990
malus_domestica	MD17G1107300.v1.1
prunus_persica	Prupe.3G209000_v2.0.a1 Prupe.3G209000_v2.0.a1
pyrus_communis	pycom09g03990 pycom17g10000
rosa_chinensis	RchiOBHm_Chr2g0157891
rosa_laevigata	RLG00000021034
rosa_multiflora	Rmu_sc0002441.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091870
rosa_rugosa	Rorug02G0464200
rosa_samantha	Rh2AG529600 Rh2BG544200 Rh2CG513900 Rh2DG552500
rosa_wichuraiana	Rw2G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	183
AccII	CGCG	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	3 cut(s)	60, 183, 560
AgsI	TTSAA	2 cut(s)	111, 128
AluBI	AGCT	4 cut(s)	71, 89, 167, 254
AluI	AGCT	4 cut(s)	71, 89, 167, 254
ApeKI	GCWGC	2 cut(s)	4, 86
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	2 cut(s)	20, 39
AspS9I	GGNCC	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	16, 98
BceAI	ACGGC	1 cut(s)	32
BclI	TGATCA	2 cut(s)	226, 486
BfaI	CTAG	2 cut(s)	44, 440
BisI	GCNGC	2 cut(s)	5, 87
BlsI	GCNGC	2 cut(s)	6, 88
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	25, 352
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	575
BmuI	ACTGGG	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 183, 560
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	60, 183, 560
BseMII	CTCAG	2 cut(s)	269, 487
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	16, 98
Bsh1236I	CGCG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	60, 183, 560
BsmFI	GGGAC	1 cut(s)	37
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	77, 226, 479, 486
BspCNI	CTCAG	2 cut(s)	268, 486
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	25, 352
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	4 cut(s)	77, 226, 479, 486
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	28, 151
BstAUI	TGTACA	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	11, 255, 473
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	2 cut(s)	20, 39
BstKTI	GATC	4 cut(s)	80, 229, 482, 489
BstMBI	GATC	4 cut(s)	77, 226, 479, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	16, 98
BtgZI	GCGATG	1 cut(s)	552
CfoI	GCGC	2 cut(s)	20, 39
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	209
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	5 cut(s)	81, 183, 206, 212, 333
CviJI	RGCY	8 cut(s)	47, 71, 89, 167, 235, 254, 341, 347
CviKI_1	RGCY	8 cut(s)	47, 71, 89, 167, 235, 254, 341, 347
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	3 cut(s)	11, 255, 473
DpnI	GATC	4 cut(s)	79, 228, 481, 488
DpnII	GATC	4 cut(s)	77, 226, 479, 486
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	5 cut(s)	84, 186, 209, 215, 336
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	5 cut(s)	80, 182, 205, 211, 332
FbaI	TGATCA	2 cut(s)	226, 486
Fnu4HI	GCNGC	2 cut(s)	5, 87
Fsp4HI	GCNGC	2 cut(s)	5, 87
FspBI	CTAG	2 cut(s)	44, 440
GlaI	GCGC	2 cut(s)	19, 38
GluI	GCNGC	2 cut(s)	5, 87
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	2 cut(s)	20, 39
Hin1II	CATG	5 cut(s)	84, 186, 209, 215, 336
Hin6I	GCGC	2 cut(s)	18, 37
HinP1I	GCGC	2 cut(s)	18, 37
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	2 cut(s)	215, 239
HpaII	CCGG	1 cut(s)	348
Hpy188I	TCNGA	5 cut(s)	77, 258, 289, 419, 491
Hpy188III	TCNNGA	6 cut(s)	95, 219, 278, 312, 475, 503
HpyAV	CCTTC	3 cut(s)	339, 387, 414
HpyCH4III	ACNGT	2 cut(s)	28, 151
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	4 cut(s)	4, 336, 404, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	3 cut(s)	11, 255, 473
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	5 cut(s)	84, 186, 209, 215, 336
HspAI	GCGC	2 cut(s)	18, 37
Ksp22I	TGATCA	2 cut(s)	226, 486
Kzo9I	GATC	4 cut(s)	77, 226, 479, 486
LmnI	GCTCC	2 cut(s)	424, 563
LpnPI	CCDG	7 cut(s)	6, 68, 80, 263, 297, 361, 460
Lsp1109I	GCAGC	2 cut(s)	16, 98
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	2 cut(s)	44, 440
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	49, 368
MalI	GATC	4 cut(s)	79, 228, 481, 488
MboI	GATC	4 cut(s)	77, 226, 479, 486
MboII	GAAGA	2 cut(s)	76, 541
MfeI	CAATTG	1 cut(s)	467
MluCI	AATT	7 cut(s)	30, 291, 307, 434, 447, 467, 556
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	2 cut(s)	8, 380
Mph1103I	ATGCAT	1 cut(s)	338
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	59, 306, 450
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	4 cut(s)	77, 226, 479, 486
NlaIII	CATG	5 cut(s)	84, 186, 209, 215, 336
NlaIV	GGNNCC	2 cut(s)	25, 352
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	215, 239
PflMI	CCANNNNNTGG	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	6, 88
PspN4I	GGNNCC	2 cut(s)	25, 352
PspPI	GGNCC	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	59, 306, 450
SatI	GCNGC	2 cut(s)	5, 87
Sau3AI	GATC	4 cut(s)	77, 226, 479, 486
Sau96I	GGNCC	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	575
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	7 cut(s)	30, 291, 307, 434, 447, 467, 556
SspMI	CTAG	2 cut(s)	44, 440
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	28, 151
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	237, 246
TasI	AATT	7 cut(s)	30, 291, 307, 434, 447, 467, 556
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	215, 239
Tru1I	TTAA	3 cut(s)	59, 306, 450
Tru9I	TTAA	3 cut(s)	59, 306, 450
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	4, 86
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	228, 275, 321, 446
Van91I	CCANNNNNTGG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	2 cut(s)	44, 440
Zsp2I	ATGCAT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.