Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012978

Physical Location & Seq

Genomic Coordinates Reverse (-)

32863299 .. 32866110

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAACCGACTTAGAGGCTCAGCGAAGCTATTCTCGCAGACTGTGCCCCAATTAAGGAATAATATGAGGCACAAAGCTCTCAGATCATGGACTGCTGTTCAGGACACTTATTTTTCAACCAAGGATGTGTTTGAGAGTCATAAGGTGGTGTTCACAGTTGGAACTTCTGTAGCTTCAGTTGCCACAGCATGGATTGGATATACTGTACGCCATTTACATGACACAAGAGTTGATACGAGGCTCGAATCAATTGAAAAAACTATAAAAGAAAAACATCATATCAAAGAAGCAGAAATAAGAGAAGTTATTGGTTCTGGAAGTATGAGTCTTTCTTCATGCATAGCCACTGCGGGAACCACTTTGGTCATCGGCTATATTTTGGGTTGGCGAGGTGGAAGGTGGTTTGCAAATAAGCAGTTCAGAAAGGAGCAGATGAAGTTGCTAGGGCACGTTAAGCCTAAAAGGTGGCAATTGCTTAGGCAGCGGATACAACAACCTAAAGGATGGCAATTCCAATTTCTAAAAAGGCCATTACTCAAACACCAAGCTCCGGAAAATGTTGTCAAAACGTGTGAAAAGATCAAGGACACTCAAACCACACATAAATTGCAGAATCCTGTTAATTTTGTTAGCAAGCAGATGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.85

Weight (kDa)

10.53

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04985 AT1G04985
fragaria_vesca	FvH4_6g41990
malus_domestica	MD17G1107300.v1.1
prunus_persica	Prupe.3G209000_v2.0.a1 Prupe.3G209000_v2.0.a1
pyrus_communis	pycom09g03990 pycom17g10000
rosa_chinensis	RchiOBHm_Chr2g0157891
rosa_laevigata	RLG00000021034
rosa_multiflora	Rmu_sc0002441.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091870
rosa_rugosa	Rorug02G0464200
rosa_samantha	Rh2AG529600 Rh2BG544200 Rh2CG513900 Rh2DG552500
rosa_wichuraiana	Rw2G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	2 cut(s)	350, 484
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	54, 189, 550
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	2 cut(s)	117, 254
AluBI	AGCT	4 cut(s)	28, 77, 173, 548
AluI	AGCT	4 cut(s)	28, 77, 173, 548
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	29
BaeGI	GKGCMC	2 cut(s)	48, 450
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	1 cut(s)	498
BciVI	GTATCC	1 cut(s)	480
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	1 cut(s)	482
BlpI	GCTNAGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	355
Bpu10I	CCTNAGC	1 cut(s)	476
Bpu1102I	GCTNAGC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 189, 550
BseAI	TCCGGA	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	130, 509
BseLI	CCNNNNNNNGG	3 cut(s)	54, 189, 550
BseMII	CTCAG	2 cut(s)	33, 94
BseSI	GKGCMC	2 cut(s)	48, 450
BseXI	GCAGC	1 cut(s)	493
BshFI	GGCC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	551
BslI	CCNNNNNNNGG	3 cut(s)	54, 189, 550
BsnI	GGCC	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	48, 450
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	2 cut(s)	83, 579
Bsp1720I	GCTNAGC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	350, 484
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	2 cut(s)	32, 93
BspEI	TCCGGA	1 cut(s)	550
BspHI	TCATGA	1 cut(s)	644
BspLI	GGNNCC	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	83, 579
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	43, 157, 205
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	4 cut(s)	11, 19, 80, 476
BstF5I	GGATG	2 cut(s)	130, 509
BstKTI	GATC	2 cut(s)	86, 582
BstMBI	GATC	2 cut(s)	83, 579
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 43, 179, 454, 481
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	48, 450
BstV1I	GCAGC	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	130, 509
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	635
CciI	TCATGA	1 cut(s)	644
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	5 cut(s)	87, 189, 218, 336, 645
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	4 cut(s)	11, 19, 80, 476
DpnI	GATC	2 cut(s)	85, 581
DpnII	GATC	2 cut(s)	83, 579
Eco130I	CCWWGG	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	5 cut(s)	90, 192, 221, 339, 648
FatI	CATG	5 cut(s)	86, 188, 217, 335, 644
FauI	CCCGC	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	482
FokI	GGATG	2 cut(s)	137, 516
Fsp4HI	GCNGC	1 cut(s)	482
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	1 cut(s)	551
Hin1II	CATG	5 cut(s)	90, 192, 221, 339, 648
HinfI	GANTC	4 cut(s)	136, 245, 325, 613
HpaII	CCGG	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	83, 422
Hpy188III	TCNNGA	4 cut(s)	101, 315, 551, 645
Hpy8I	GTNNAC	1 cut(s)	153
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	3 cut(s)	43, 157, 205
HpyCH4IV	ACGT	2 cut(s)	450, 569
HpyCH4V	TGCA	3 cut(s)	339, 407, 610
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 43, 179, 454, 481
HpyF3I	CTNAG	4 cut(s)	11, 19, 80, 476
HpySE526I	ACGT	2 cut(s)	450, 569
Hsp92II	CATG	5 cut(s)	90, 192, 221, 339, 648
Kpn2I	TCCGGA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	83, 579
LmnI	GCTCC	2 cut(s)	427, 553
LpnPI	CCDG	4 cut(s)	86, 300, 564, 630
Lsp1109I	GCAGC	1 cut(s)	493
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	2 cut(s)	450, 569
MalI	GATC	2 cut(s)	85, 581
MboI	GATC	2 cut(s)	83, 579
MboII	GAAGA	1 cut(s)	324
MfeI	CAATTG	2 cut(s)	249, 470
MhlI	GDGCHC	2 cut(s)	48, 450
MluCI	AATT	7 cut(s)	50, 249, 470, 509, 515, 605, 622
MlyI	GAGTC	2 cut(s)	145, 334
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	8, 60, 231, 383
Mph1103I	ATGCAT	1 cut(s)	341
MroI	TCCGGA	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	3 cut(s)	53, 453, 621
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	1 cut(s)	551
MunI	CAATTG	2 cut(s)	249, 470
MwoI	GCNNNNNNNGC	5 cut(s)	34, 43, 179, 454, 481
NdeII	GATC	2 cut(s)	83, 579
NlaIII	CATG	5 cut(s)	90, 192, 221, 339, 648
NlaIV	GGNNCC	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	341
PagI	TCATGA	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	245, 613
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	483
PleI	GAGTC	2 cut(s)	144, 333
PpsI	GAGTC	2 cut(s)	144, 333
PspN4I	GGNNCC	1 cut(s)	355
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	53, 453, 621
SatI	GCNGC	1 cut(s)	482
Sau3AI	GATC	2 cut(s)	83, 579
SchI	GAGTC	2 cut(s)	145, 334
SduI	GDGCHC	2 cut(s)	48, 450
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	7 cut(s)	50, 249, 470, 509, 515, 605, 622
SsiI	CCGC	2 cut(s)	350, 484
SspMI	CTAG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	43, 157, 205
TaiI	ACGT	2 cut(s)	453, 572
TaqI	TCGA	1 cut(s)	243
TasI	AATT	7 cut(s)	50, 249, 470, 509, 515, 605, 622
TfiI	GAWTC	2 cut(s)	245, 613
Tru1I	TTAA	3 cut(s)	53, 453, 621
Tru9I	TTAA	3 cut(s)	53, 453, 621
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	17, 324, 449
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.