pycom09g03990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012978
Physical Location & Seq
Forward (+)
2972015 .. 2975104
3090 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03990.6

Sequence Viewer

Length: 861 bp
ATGACACGTGCTGTACCGTACTGTAGCATTCGTGTACTGGTTATATTGAAAAATTTCTCCAAGAGCTATGAACTCTACGGAATCCCATCTGATCTGACCAATAAAGTACACAATACACACAAAAATGCAACAAAAGAAGTAGCAGCTTCAAGCTTTTGCCTCCATTTCTCCCTCCCAGAAACTCCGCGGTGGGCATCCCTGGAATGCGCCATGCAGCGCCTTAGAAGCTCGGGGTCCTTACTTTCGTGCTCTCAGGCCATAACCCAGTTGAGGAAGAAAGCTTTCAGATCATGGGGTGCCGTTCAGGACACTTATTTTTCGACAAAGGATATATTTGAAAATCATAAGGTTGTATTTACAGTTGGAACTTCTATTGCATCAGTCGCCACAGCATGGTTTGGATATACTTTACGTCACCTACATGAATCAAGAGTTGATCAAAGGCTCGAATCAATTGAAGAAGTGATGAAAAACAATCATAATCTGGAACAGTTGGAAATCAGAAACATCGTGGATTCTGGAACTATTGGTCTTCCTTCATGCATAGCCACTGCGGGAACCACTTTAGTTATCGGCTACGCTTTGGGTTGGCGAGGTGGAAGGTGGTATGCAAATAGGAAGTTCAGAAGGGAGCAGATGAAATTGCTAGGGCAAATTAAACCGAAAAGGTGGCCACTGATTAGGCGGATAGAACCTAAAGCGTGGCAATTCCAATTTCTCAGAAGACCGCTAACCAGACTGAGAACACAAGATAATCCTGTCAAAACATCGGAAAAGATAAAGGACACTCGTACCTCACATAATTTGGAGGATCCTATCAATCTTGTTAGCAAGCAAGCATCATGTTATGCTTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.83

Weight (kDa)

9.99

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04985 AT1G04985
fragaria_vesca FvH4_6g41990
malus_domestica MD17G1107300.v1.1
prunus_persica Prupe.3G209000_v2.0.a1 Prupe.3G209000_v2.0.a1
pyrus_communis pycom09g03990 pycom17g10000
rosa_chinensis RchiOBHm_Chr2g0157891
rosa_laevigata RLG00000021034
rosa_multiflora Rmu_sc0002441.1_g000006
rosa_roxburghii Rroxscaffold_2G00091870
rosa_rugosa Rorug02G0464200
rosa_samantha Rh2AG529600 Rh2BG544200 Rh2CG513900 Rh2DG552500
rosa_wichuraiana Rw2G043820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 393
AccII CGCG 1 cut(s) 187
AciI CCGC 5 cut(s) 185, 187, 554, 685, 728
AclWI GGATC 2 cut(s) 806, 819
AcoI YGGCCR 1 cut(s) 671
AcsI RAATTY 1 cut(s) 52
AcvI CACGTG 1 cut(s) 8
AfaI GTAC 5 cut(s) 15, 20, 36, 108, 793
AfiI CCNNNNNNNGG 2 cut(s) 270, 393
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 4 cut(s) 49, 150, 338, 458
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 5 cut(s) 66, 146, 153, 228, 281
AluI AGCT 5 cut(s) 66, 146, 153, 228, 281
Alw21I GWGCWC 1 cut(s) 251
AlwI GGATC 2 cut(s) 806, 819
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 2 cut(s) 255, 671
ApeKI GCWGC 2 cut(s) 143, 214
ApoI RAATTY 1 cut(s) 52
Asp700I GAANNNNTTC 2 cut(s) 53, 281
AspLEI GCGC 2 cut(s) 209, 219
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 1 cut(s) 234
BaeI ACNNNNGTAYC 2 cut(s) 775, 808
BalI TGGCCA 1 cut(s) 673
BamHI GGATCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 296
BbrPI CACGTG 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 524, 730
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 155, 226
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 1 cut(s) 436
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 220
BisI GCNGC 2 cut(s) 144, 215
BlsI GCNGC 2 cut(s) 145, 216
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 4 cut(s) 235, 298, 559, 813
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 3 cut(s) 203, 386, 848
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 2 cut(s) 524, 730
BsaAI YACGTR 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 185, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 393
Bse1I ACTGG 2 cut(s) 42, 265
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 185, 198
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 270, 393
BseMII CTCAG 3 cut(s) 266, 731, 733
BseNI ACTGG 2 cut(s) 42, 265
BseXI GCAGC 2 cut(s) 155, 226
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 257, 673
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 270, 393
BsmI GAATGC 2 cut(s) 27, 209
BsnI GGCC 2 cut(s) 257, 673
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 4 cut(s) 91, 287, 436, 811
BspACI CCGC 5 cut(s) 185, 187, 554, 685, 728
BspANI GGCC 2 cut(s) 257, 673
BspCNI CTCAG 3 cut(s) 265, 732, 732
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 4 cut(s) 235, 298, 559, 813
BspPI GGATC 2 cut(s) 806, 819
BspT107I GGYRCC 1 cut(s) 296
BsrI ACTGG 2 cut(s) 42, 265
BssECI CCNNGG 2 cut(s) 185, 198
BssMI GATC 4 cut(s) 91, 287, 436, 811
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 4 cut(s) 18, 23, 361, 492
BstBAI YACGTR 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 833, 837
BstDEI CTNAG 4 cut(s) 221, 252, 719, 740
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 2 cut(s) 209, 219
BstKTI GATC 4 cut(s) 94, 290, 439, 814
BstMBI GATC 4 cut(s) 91, 287, 436, 811
BstMWI GCNNNNNNNGC 2 cut(s) 225, 383
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 22
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 155, 226
BstV2I GAAGAC 2 cut(s) 524, 730
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 2 cut(s) 257, 673
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 2 cut(s) 549, 674
Cac8I GCNNGC 2 cut(s) 833, 837
CfoI GCGC 2 cut(s) 209, 219
Cfr13I GGNCC 1 cut(s) 234
Cfr42I CCGCGG 1 cut(s) 188
Csp6I GTAC 5 cut(s) 14, 19, 35, 107, 792
CviAII CATG 6 cut(s) 211, 291, 393, 422, 540, 843
CviQI GTAC 5 cut(s) 14, 19, 35, 107, 792
DdeI CTNAG 4 cut(s) 221, 252, 719, 740
DpnI GATC 4 cut(s) 93, 289, 438, 813
DpnII GATC 4 cut(s) 91, 287, 436, 811
EaeI YGGCCR 1 cut(s) 671
EciI GGCGGA 1 cut(s) 700
Eco47I GGWCC 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 545
FaeI CATG 6 cut(s) 214, 294, 396, 425, 543, 846
FatI CATG 6 cut(s) 210, 290, 392, 421, 539, 842
FauI CCCGC 1 cut(s) 547
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 144, 215
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 144, 215
FspBI CTAG 1 cut(s) 647
GlaI GCGC 2 cut(s) 208, 218
GluI GCNGC 2 cut(s) 144, 215
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 2 cut(s) 257, 673
HhaI GCGC 2 cut(s) 209, 219
Hin1II CATG 6 cut(s) 214, 294, 396, 425, 543, 846
Hin6I GCGC 2 cut(s) 207, 217
HinP1I GCGC 2 cut(s) 207, 217
HindIII AAGCTT 2 cut(s) 151, 279
HinfI GANTC 4 cut(s) 81, 425, 449, 515
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 35, 109
Hpy188I TCNGA 7 cut(s) 91, 96, 287, 503, 626, 722, 772
Hpy188III TCNNGA 4 cut(s) 305, 429, 485, 519
Hpy8I GTNNAC 2 cut(s) 35, 109
HpyAV CCTTC 3 cut(s) 546, 594, 621
HpyCH4III ACNGT 4 cut(s) 18, 23, 361, 492
HpyCH4IV ACGT 2 cut(s) 7, 412
HpyCH4V TGCA 5 cut(s) 128, 214, 377, 543, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 383
HpyF3I CTNAG 4 cut(s) 221, 252, 719, 740
HpySE526I ACGT 2 cut(s) 7, 412
Hsp92II CATG 6 cut(s) 214, 294, 396, 425, 543, 846
HspAI GCGC 2 cut(s) 207, 217
Ksp22I TGATCA 1 cut(s) 436
KspI CCGCGG 1 cut(s) 188
Kzo9I GATC 4 cut(s) 91, 287, 436, 811
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 2 cut(s) 155, 226
LweI GCATC 3 cut(s) 203, 386, 848
MaeI CTAG 1 cut(s) 647
MaeII ACGT 2 cut(s) 7, 412
MaeIII GTNAC 1 cut(s) 413
MalI GATC 4 cut(s) 93, 289, 438, 813
MboI GATC 4 cut(s) 91, 287, 436, 811
MboII GAAGA 4 cut(s) 286, 470, 524, 735
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 673
MluCI AATT 7 cut(s) 52, 453, 641, 654, 707, 713, 802
MluNI TGGCCA 1 cut(s) 673
MmeI TCCRAC 2 cut(s) 343, 474
MnlI CCTC 6 cut(s) 170, 182, 264, 587, 802, 805
Mox20I TGGCCA 1 cut(s) 673
Mph1103I ATGCAT 1 cut(s) 545
MroXI GAANNNNTTC 2 cut(s) 53, 281
MscI TGGCCA 1 cut(s) 673
MseI TTAA 1 cut(s) 657
MslI CAYNNNNRTG 2 cut(s) 123, 420
Msp20I TGGCCA 1 cut(s) 673
MspA1I CMGCKG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 2 cut(s) 27, 209
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 225, 383
NdeII GATC 4 cut(s) 91, 287, 436, 811
NlaIII CATG 6 cut(s) 214, 294, 396, 425, 543, 846
NlaIV GGNNCC 4 cut(s) 235, 298, 559, 813
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 545
PctI GAATGC 2 cut(s) 27, 209
PdmI GAANNNNTTC 2 cut(s) 53, 281
PfeI GAWTC 4 cut(s) 81, 425, 449, 515
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 2 cut(s) 145, 216
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 198
PspCI CACGTG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 4 cut(s) 235, 298, 559, 813
PspPI GGNCC 1 cut(s) 234
PspPPI RGGWCCY 1 cut(s) 234
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 5 cut(s) 15, 20, 36, 108, 793
RsaNI GTAC 5 cut(s) 14, 19, 35, 107, 792
RseI CAYNNNNRTG 2 cut(s) 123, 420
SacII CCGCGG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 2 cut(s) 144, 215
Sau3AI GATC 4 cut(s) 91, 287, 436, 811
Sau96I GGNCC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 3 cut(s) 203, 386, 848
SfcI CTRYAG 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 188
SgrBI CCGCGG 1 cut(s) 188
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 123, 420
Sse9I AATT 7 cut(s) 52, 453, 641, 654, 707, 713, 802
SsiI CCGC 5 cut(s) 185, 187, 554, 685, 728
SspMI CTAG 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 4 cut(s) 18, 23, 361, 492
TaiI ACGT 2 cut(s) 10, 415
TaqI TCGA 2 cut(s) 320, 447
TasI AATT 7 cut(s) 52, 453, 641, 654, 707, 713, 802
TatI WGTACW 2 cut(s) 34, 106
TfiI GAWTC 4 cut(s) 81, 425, 449, 515
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 2 cut(s) 556, 681
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 143, 214
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 5 cut(s) 84, 438, 482, 528, 653
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 556, 681
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 52
XmnI GAANNNNTTC 2 cut(s) 53, 281
XspI CTAG 1 cut(s) 647
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.