general transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05055 |
| fragaria_vesca | FvH4_3g32970 |
| malus_domestica | MD03G1112800.v1.1 MD11G1132000.v1.1 |
| prunus_persica | Prupe.6G097100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0060301 |
| rosa_laevigata | RLG00000035300 RLG00000035353 |
| rosa_multiflora | Rmu_co8508299.1_g000001 Rmu_sc0003366.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00020480 |
| rosa_rugosa | Rorug05G0328500 |
| rosa_samantha | Rh5AG392700 Rh5AG393200 Rh5BG405800 Rh5CG429300 Rh5CG429700 Rh5DG420800 |
| rosa_wichuraiana | Rw5G037020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 411 |
| AccB1I | GGYRCC | 1 cut(s) | 1033 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 548 |
| AccII | CGCG | 1 cut(s) | 558 |
| AciI | CCGC | 9 cut(s) | 59, 184, 204, 207, 284, 556, 711, 957, 980 |
| AclWI | GGATC | 3 cut(s) | 96, 590, 759 |
| AcoI | YGGCCR | 2 cut(s) | 143, 321 |
| AcsI | RAATTY | 2 cut(s) | 794, 808 |
| AfaI | GTAC | 3 cut(s) | 220, 519, 575 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 106, 548, 700, 940 |
| AflIII | ACRYGT | 4 cut(s) | 328, 590, 900, 1142 |
| AgsI | TTSAA | 4 cut(s) | 623, 764, 852, 1047 |
| AjnI | CCWGG | 5 cut(s) | 104, 534, 598, 699, 1213 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 870, 902 |
| AluBI | AGCT | 9 cut(s) | 86, 281, 338, 479, 581, 839, 893, 920, 1200 |
| AluI | AGCT | 9 cut(s) | 86, 281, 338, 479, 581, 839, 893, 920, 1200 |
| Alw26I | GTCTC | 3 cut(s) | 394, 437, 608 |
| AlwI | GGATC | 3 cut(s) | 96, 590, 759 |
| Ama87I | CYCGRG | 2 cut(s) | 273, 921 |
| AoxI | GGCC | 2 cut(s) | 143, 321 |
| ApeKI | GCWGC | 5 cut(s) | 209, 212, 278, 281, 839 |
| ApoI | RAATTY | 2 cut(s) | 794, 808 |
| AspLEI | GCGC | 2 cut(s) | 412, 772 |
| AsuHPI | GGTGA | 3 cut(s) | 497, 545, 1223 |
| AvaI | CYCGRG | 2 cut(s) | 273, 921 |
| BaeGI | GKGCMC | 1 cut(s) | 908 |
| BalI | TGGCCA | 1 cut(s) | 323 |
| BanI | GGYRCC | 1 cut(s) | 1033 |
| BanII | GRGCYC | 1 cut(s) | 666 |
| BauI | CACGAG | 1 cut(s) | 1193 |
| BbsI | GAAGAC | 1 cut(s) | 182 |
| BbvCI | CCTCAGC | 1 cut(s) | 843 |
| BbvI | GCAGC | 5 cut(s) | 196, 199, 268, 290, 826 |
| BccI | CCATC | 6 cut(s) | 304, 457, 550, 814, 1008, 1249 |
| BceAI | ACGGC | 2 cut(s) | 158, 171 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 38, 72 |
| BciT130I | CCWGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| BciVI | GTATCC | 1 cut(s) | 236 |
| BclI | TGATCA | 1 cut(s) | 813 |
| BcoDI | GTCTC | 3 cut(s) | 394, 437, 608 |
| BfmI | CTRYAG | 1 cut(s) | 669 |
| BfuI | GTATCC | 1 cut(s) | 236 |
| BglII | AGATCT | 1 cut(s) | 424 |
| BisI | GCNGC | 8 cut(s) | 184, 207, 210, 213, 279, 282, 840, 980 |
| BlsI | GCNGC | 8 cut(s) | 185, 208, 211, 214, 280, 283, 841, 981 |
| Bme1390I | CCNGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| BmeT110I | CYCGRG | 2 cut(s) | 273, 921 |
| BmiI | GGNNCC | 2 cut(s) | 540, 1035 |
| BmrFI | CCNGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| BmsI | GCATC | 4 cut(s) | 46, 535, 751, 902 |
| BpiI | GAAGAC | 1 cut(s) | 182 |
| Bpu10I | CCTNAGC | 1 cut(s) | 843 |
| BsaI | GGTCTC | 2 cut(s) | 394, 608 |
| BsaJI | CCNNGG | 1 cut(s) | 105 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 106, 548, 700, 940 |
| Bse1I | ACTGG | 1 cut(s) | 712 |
| BseBI | CCWGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| BseDI | CCNNGG | 1 cut(s) | 105 |
| BseGI | GGATG | 3 cut(s) | 130, 315, 1188 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 106, 548, 700, 940 |
| BseMII | CTCAG | 5 cut(s) | 188, 362, 432, 591, 834 |
| BseNI | ACTGG | 1 cut(s) | 712 |
| BseRI | GAGGAG | 2 cut(s) | 125, 481 |
| BseSI | GKGCMC | 1 cut(s) | 908 |
| BseXI | GCAGC | 5 cut(s) | 196, 199, 268, 290, 826 |
| BsgI | GTGCAG | 2 cut(s) | 1023, 1134 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| Bsh1285I | CGRYCG | 1 cut(s) | 100 |
| BshFI | GGCC | 2 cut(s) | 145, 323 |
| BshNI | GGYRCC | 1 cut(s) | 1033 |
| BsiEI | CGRYCG | 1 cut(s) | 100 |
| BsiHKCI | CYCGRG | 2 cut(s) | 273, 921 |
| BsiSI | CCGG | 2 cut(s) | 307, 782 |
| BslFI | GGGAC | 3 cut(s) | 249, 1115, 1221 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 106, 548, 700, 940 |
| BsmAI | GTCTC | 3 cut(s) | 394, 437, 608 |
| BsmFI | GGGAC | 3 cut(s) | 249, 1115, 1221 |
| BsmI | GAATGC | 2 cut(s) | 950, 1227 |
| BsnI | GGCC | 2 cut(s) | 145, 323 |
| Bso31I | GGTCTC | 2 cut(s) | 394, 608 |
| BsoBI | CYCGRG | 2 cut(s) | 273, 921 |
| Bsp1286I | GDGCHC | 2 cut(s) | 666, 908 |
| Bsp1407I | TGTACA | 1 cut(s) | 517 |
| Bsp143I | GATC | 7 cut(s) | 20, 101, 424, 595, 751, 813, 992 |
| BspACI | CCGC | 9 cut(s) | 59, 184, 204, 207, 284, 556, 711, 957, 980 |
| BspANI | GGCC | 2 cut(s) | 145, 323 |
| BspCNI | CTCAG | 5 cut(s) | 187, 363, 433, 590, 835 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspLI | GGNNCC | 2 cut(s) | 540, 1035 |
| BspMAI | CTGCAG | 1 cut(s) | 673 |
| BspPI | GGATC | 3 cut(s) | 96, 590, 759 |
| BspT107I | GGYRCC | 1 cut(s) | 1033 |
| BspTNI | GGTCTC | 2 cut(s) | 394, 608 |
| BsrGI | TGTACA | 1 cut(s) | 517 |
| BsrI | ACTGG | 1 cut(s) | 712 |
| BssECI | CCNNGG | 1 cut(s) | 105 |
| BssMI | GATC | 7 cut(s) | 20, 101, 424, 595, 751, 813, 992 |
| BssSI | CACGAG | 1 cut(s) | 1193 |
| Bst2BI | CACGAG | 1 cut(s) | 1193 |
| Bst2UI | CCWGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| Bst4CI | ACNGT | 4 cut(s) | 158, 1178, 1211, 1235 |
| Bst6I | CTCTTC | 2 cut(s) | 36, 1013 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 797, 954 |
| BstAUI | TGTACA | 1 cut(s) | 517 |
| BstC8I | GCNNGC | 2 cut(s) | 1038, 1157 |
| BstDEI | CTNAG | 5 cut(s) | 174, 371, 441, 577, 843 |
| BstEII | GGTNACC | 1 cut(s) | 551 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 698 |
| BstF5I | GGATG | 3 cut(s) | 130, 315, 1188 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstHHI | GCGC | 2 cut(s) | 412, 772 |
| BstKTI | GATC | 7 cut(s) | 23, 104, 427, 598, 754, 816, 995 |
| BstMAI | GTCTC | 3 cut(s) | 394, 437, 608 |
| BstMBI | GATC | 7 cut(s) | 20, 101, 424, 595, 751, 813, 992 |
| BstMCI | CGRYCG | 1 cut(s) | 100 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 212, 320, 797, 912, 954, 1101, 1224 |
| BstNI | CCWGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| BstNSI | RCATGY | 5 cut(s) | 332, 594, 770, 904, 1146 |
| BstPI | GGTNACC | 1 cut(s) | 551 |
| BstSCI | CCNGG | 5 cut(s) | 104, 534, 598, 699, 1213 |
| BstSFI | CTRYAG | 1 cut(s) | 669 |
| BstSLI | GKGCMC | 1 cut(s) | 908 |
| BstUI | CGCG | 1 cut(s) | 558 |
| BstV1I | GCAGC | 5 cut(s) | 196, 199, 268, 290, 826 |
| BstV2I | GAAGAC | 1 cut(s) | 182 |
| BstX2I | RGATCY | 2 cut(s) | 424, 751 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 707 |
| BstYI | RGATCY | 2 cut(s) | 424, 751 |
| BsuI | GTATCC | 1 cut(s) | 236 |
| BsuRI | GGCC | 2 cut(s) | 145, 323 |
| BtsCI | GGATG | 3 cut(s) | 130, 315, 1188 |
| BtsI | GCAGTG | 1 cut(s) | 735 |
| BtsIMutI | CAGTG | 2 cut(s) | 163, 735 |
| Cac8I | GCNNGC | 2 cut(s) | 1038, 1157 |
| CfoI | GCGC | 2 cut(s) | 412, 772 |
| CsiI | ACCWGGT | 1 cut(s) | 534 |
| Csp6I | GTAC | 3 cut(s) | 219, 518, 574 |
| CviAII | CATG | 9 cut(s) | 170, 329, 521, 591, 610, 767, 901, 1134, 1143 |
| CviQI | GTAC | 3 cut(s) | 219, 518, 574 |
| DdeI | CTNAG | 5 cut(s) | 174, 371, 441, 577, 843 |
| DpnI | GATC | 7 cut(s) | 22, 103, 426, 597, 753, 815, 994 |
| DpnII | GATC | 7 cut(s) | 20, 101, 424, 595, 751, 813, 992 |
| EaeI | YGGCCR | 2 cut(s) | 143, 321 |
| Eam1104I | CTCTTC | 2 cut(s) | 36, 1013 |
| EarI | CTCTTC | 2 cut(s) | 36, 1013 |
| EciI | GGCGGA | 2 cut(s) | 193, 726 |
| Eco24I | GRGCYC | 1 cut(s) | 666 |
| Eco31I | GGTCTC | 2 cut(s) | 394, 608 |
| Eco32I | GATATC | 2 cut(s) | 248, 607 |
| Eco88I | CYCGRG | 2 cut(s) | 273, 921 |
| Eco91I | GGTNACC | 1 cut(s) | 551 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 698 |
| EcoO65I | GGTNACC | 1 cut(s) | 551 |
| EcoRII | CCWGG | 5 cut(s) | 104, 534, 598, 699, 1213 |
| EcoRV | GATATC | 2 cut(s) | 248, 607 |
| EcoT38I | GRGCYC | 1 cut(s) | 666 |
| FaeI | CATG | 9 cut(s) | 173, 332, 524, 594, 613, 770, 904, 1137, 1146 |
| FaqI | GGGAC | 3 cut(s) | 249, 1115, 1221 |
| FatI | CATG | 9 cut(s) | 169, 328, 520, 590, 609, 766, 900, 1133, 1142 |
| FauNDI | CATATG | 1 cut(s) | 683 |
| FbaI | TGATCA | 1 cut(s) | 813 |
| Fnu4HI | GCNGC | 8 cut(s) | 184, 207, 210, 213, 279, 282, 840, 980 |
| FokI | GGATG | 3 cut(s) | 137, 322, 1175 |
| FriOI | GRGCYC | 1 cut(s) | 666 |
| Fsp4HI | GCNGC | 8 cut(s) | 184, 207, 210, 213, 279, 282, 840, 980 |
| FspI | TGCGCA | 1 cut(s) | 411 |
| GlaI | GCGC | 2 cut(s) | 411, 771 |
| GluI | GCNGC | 8 cut(s) | 184, 207, 210, 213, 279, 282, 840, 980 |
| HaeIII | GGCC | 2 cut(s) | 145, 323 |
| HapII | CCGG | 2 cut(s) | 307, 782 |
| HhaI | GCGC | 2 cut(s) | 412, 772 |
| Hin1II | CATG | 9 cut(s) | 173, 332, 524, 594, 613, 770, 904, 1137, 1146 |
| Hin6I | GCGC | 2 cut(s) | 410, 770 |
| HinP1I | GCGC | 2 cut(s) | 410, 770 |
| HincII | GTYRAC | 1 cut(s) | 94 |
| HindII | GTYRAC | 1 cut(s) | 94 |
| HindIII | AAGCTT | 2 cut(s) | 336, 477 |
| HinfI | GANTC | 5 cut(s) | 128, 364, 373, 445, 488 |
| HpaII | CCGG | 2 cut(s) | 307, 782 |
| HphI | GGTGA | 3 cut(s) | 497, 545, 1223 |
| Hpy166II | GTNNAC | 3 cut(s) | 94, 689, 733 |
| Hpy188I | TCNGA | 5 cut(s) | 299, 372, 567, 1053, 1065 |
| Hpy188III | TCNNGA | 6 cut(s) | 132, 440, 509, 817, 1012, 1172 |
| Hpy8I | GTNNAC | 3 cut(s) | 94, 689, 733 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyAV | CCTTC | 1 cut(s) | 56 |
| HpyCH4III | ACNGT | 4 cut(s) | 158, 1178, 1211, 1235 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 212, 320, 797, 912, 954, 1101, 1224 |
| HpyF3I | CTNAG | 5 cut(s) | 174, 371, 441, 577, 843 |
| Hsp92II | CATG | 9 cut(s) | 173, 332, 524, 594, 613, 770, 904, 1137, 1146 |
| HspAI | GCGC | 2 cut(s) | 410, 770 |
| Ksp22I | TGATCA | 1 cut(s) | 813 |
| Kzo9I | GATC | 7 cut(s) | 20, 101, 424, 595, 751, 813, 992 |
| LmnI | GCTCC | 2 cut(s) | 890, 1024 |
| Lsp1109I | GCAGC | 5 cut(s) | 196, 199, 268, 290, 826 |
| LweI | GCATC | 4 cut(s) | 46, 535, 751, 902 |
| MabI | ACCWGGT | 1 cut(s) | 534 |
| MaeIII | GTNAC | 6 cut(s) | 485, 551, 896, 929, 1138, 1178 |
| MalI | GATC | 7 cut(s) | 22, 103, 426, 597, 753, 815, 994 |
| MboI | GATC | 7 cut(s) | 20, 101, 424, 595, 751, 813, 992 |
| MboII | GAAGA | 7 cut(s) | 50, 53, 65, 182, 746, 966, 1000 |
| MfeI | CAATTG | 2 cut(s) | 147, 801 |
| MflI | RGATCY | 2 cut(s) | 424, 751 |
| MhlI | GDGCHC | 2 cut(s) | 666, 908 |
| MlsI | TGGCCA | 1 cut(s) | 323 |
| MluCI | AATT | 9 cut(s) | 147, 378, 641, 657, 794, 801, 808, 1070, 1107 |
| MluNI | TGGCCA | 1 cut(s) | 323 |
| MlyI | GAGTC | 4 cut(s) | 137, 382, 439, 482 |
| MmeI | TCCRAC | 1 cut(s) | 453 |
| Mox20I | TGGCCA | 1 cut(s) | 323 |
| MscI | TGGCCA | 1 cut(s) | 323 |
| MseI | TTAA | 3 cut(s) | 419, 644, 882 |
| Msp20I | TGGCCA | 1 cut(s) | 323 |
| MspA1I | CMGCKG | 2 cut(s) | 209, 281 |
| MspI | CCGG | 2 cut(s) | 307, 782 |
| MspR9I | CCNGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| MunI | CAATTG | 2 cut(s) | 147, 801 |
| Mva1269I | GAATGC | 2 cut(s) | 950, 1227 |
| MvaI | CCWGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| MvnI | CGCG | 1 cut(s) | 558 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 212, 320, 797, 912, 954, 1101, 1224 |
| NdeI | CATATG | 1 cut(s) | 683 |
| NdeII | GATC | 7 cut(s) | 20, 101, 424, 595, 751, 813, 992 |
| NlaIII | CATG | 9 cut(s) | 173, 332, 524, 594, 613, 770, 904, 1137, 1146 |
| NlaIV | GGNNCC | 2 cut(s) | 540, 1035 |
| NmuCI | GTSAC | 4 cut(s) | 485, 551, 929, 1178 |
| NsbI | TGCGCA | 1 cut(s) | 411 |
| NspI | RCATGY | 5 cut(s) | 332, 594, 770, 904, 1146 |
| PciI | ACATGT | 4 cut(s) | 328, 590, 900, 1142 |
| PctI | GAATGC | 2 cut(s) | 950, 1227 |
| PfeI | GAWTC | 1 cut(s) | 364 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 548 |
| PkrI | GCNGC | 8 cut(s) | 185, 208, 211, 214, 280, 283, 841, 981 |
| PleI | GAGTC | 4 cut(s) | 136, 381, 439, 482 |
| PpsI | GAGTC | 4 cut(s) | 136, 381, 439, 482 |
| PscI | ACATGT | 4 cut(s) | 328, 590, 900, 1142 |
| Psp6I | CCWGG | 5 cut(s) | 104, 534, 598, 699, 1213 |
| PspEI | GGTNACC | 1 cut(s) | 551 |
| PspGI | CCWGG | 5 cut(s) | 104, 534, 598, 699, 1213 |
| PspN4I | GGNNCC | 2 cut(s) | 540, 1035 |
| PstI | CTGCAG | 1 cut(s) | 673 |
| PsuI | RGATCY | 2 cut(s) | 424, 751 |
| PvuII | CAGCTG | 1 cut(s) | 281 |
| RsaI | GTAC | 3 cut(s) | 220, 519, 575 |
| RsaNI | GTAC | 3 cut(s) | 219, 518, 574 |
| SaqAI | TTAA | 3 cut(s) | 419, 644, 882 |
| SatI | GCNGC | 8 cut(s) | 184, 207, 210, 213, 279, 282, 840, 980 |
| Sau3AI | GATC | 7 cut(s) | 20, 101, 424, 595, 751, 813, 992 |
| SchI | GAGTC | 4 cut(s) | 137, 382, 439, 482 |
| ScrFI | CCNGG | 5 cut(s) | 106, 536, 600, 701, 1215 |
| SduI | GDGCHC | 2 cut(s) | 666, 908 |
| SexAI | ACCWGGT | 1 cut(s) | 534 |
| SfaNI | GCATC | 4 cut(s) | 46, 535, 751, 902 |
| SfcI | CTRYAG | 1 cut(s) | 669 |
| Sse9I | AATT | 9 cut(s) | 147, 378, 641, 657, 794, 801, 808, 1070, 1107 |
| SsiI | CCGC | 9 cut(s) | 59, 184, 204, 207, 284, 556, 711, 957, 980 |
| StyD4I | CCNGG | 5 cut(s) | 104, 534, 598, 699, 1213 |
| TaaI | ACNGT | 4 cut(s) | 158, 1178, 1211, 1235 |
| TaqI | TCGA | 2 cut(s) | 244, 333 |
| TaqII | GACCGA | 1 cut(s) | 114 |
| TasI | AATT | 9 cut(s) | 147, 378, 641, 657, 794, 801, 808, 1070, 1107 |
| TatI | WGTACW | 2 cut(s) | 517, 573 |
| TauI | GCSGC | 3 cut(s) | 186, 209, 982 |
| TfiI | GAWTC | 1 cut(s) | 364 |
| Tru1I | TTAA | 3 cut(s) | 419, 644, 882 |
| Tru9I | TTAA | 3 cut(s) | 419, 644, 882 |
| TscAI | CASTG | 2 cut(s) | 163, 735 |
| TseFI | GTSAC | 4 cut(s) | 485, 551, 929, 1178 |
| TseI | GCWGC | 5 cut(s) | 209, 212, 278, 281, 839 |
| Tsp45I | GTSAC | 4 cut(s) | 485, 551, 929, 1178 |
| TspDTI | ATGAA | 3 cut(s) | 45, 331, 670 |
| TspGWI | ACGGA | 1 cut(s) | 956 |
| TspRI | CASTG | 2 cut(s) | 163, 735 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 548 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 698 |
| XapI | RAATTY | 2 cut(s) | 794, 808 |
| XceI | RCATGY | 5 cut(s) | 332, 594, 770, 904, 1146 |