AT1G05055

general transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
1448631 .. 1450901
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05055.1

Sequence Viewer

Length: 1266 bp
ATGAGTAATCAAAGAAAGAGATCAAACGATGAAAGAGAAGAAGAGGACGACGAAGATGCGGAAGGTATCGGCGAGTGGGAGAGAGCTTATGTTGACGACCGATCCTGGGAGGAGTTGCAAGAGGATGAGTCTGGACTTTTACGGCCAATTGATAACAGTGCCATTTACCATGCTCAGTATCGCCGCCGTCTTCGTATGCTCTCCGCCGCTGCTGCTGGTACTCGTATCCAAAAGGGACTTATTCGATATCTCTACATCGTCATTGACTTCTCTCGGGCAGCTGCGGAAATGGATTTCAGACCAAGCCGGATGGCTATAATGGCCAAACATGTCGAAGCTTTCATTAGAGAGTTCTTTGACCAGAATCCTCTGAGTCAAATTGGGTTGGTCTCTATAAAAAATGGAGTTGCGCATACATTAACAGATCTTGGTGGTAGTCCTGAGACTCACATCAAAGCGTTGATGGGGAAGTTGGAAGCTTTGGGTGACTCCTCTTTGCAGAACGCTCTGGAACTTGTACATGAGCATCTCAACCAGGTTCCATCTTATGGTCACCGCGAGGTTCTGATATTGTACTCAGCTTTATGCACATGTGATCCAGGCGATATCATGGAGACCATTCAAAAATGCAAGAAATCCAAATTAAGATGTTCTGTAATTGGGCTCTCTGCAGAAATGTTCATATGTAAACACCTCTGCCAGGAAACTGGCGGATTGTATTCAGTTGCAGTGGACGAGGTGCATCTAAAGGATCTTCTGCTTGAACATGCGCCTCCACCTCCGGCAATAGCAGAATTTGCAATTGCAAATTTGATCAAGATGGGTTTCCCACAAAGAGCTGCTGAGGGTTCAATGGCGATTTGTTCGTGTCATAAGGAAGTTAAGATTGGAGCTGGTTACATGTGCCCAAGATGCAAAGCTCGGGTATGTGACCTCCCTACGGAATGCACTATCTGCGGTCTAACACTTGTTTCTTCGCCGCATTTGGCGAGATCATACCATCATCTCTTCCCGATTGCTCCATTTGATGAGGTGCCTGCACTTTCAAGTCTGAATGATAATCGGAGAAAATTGGGAAAGAGTTGTTTTGGTTGCCAACAGAGCCTAATTGGTGCAGGGAATAAACCCGTCCCATGCGTAACATGTCGTAAATGCAAGCACTATTTCTGTCTGGACTGTGACATATACATCCACGAGAGCTTACACAACTGTCCTGGCTGTGAGAGCATTCACCGTCCCAAATCAGTTTCTTTGATGGAAGAATGA

Protein Analysis

421

Amino Acids

46.98

Weight (kDa)

6.15

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 85 - 192 3.4e-10 von Willebrand factor type A domain
Ssl1 PF04056 87 - 277 1.7e-90 Ssl1-like
C1_4 PF07975 361 - 409 3.9e-18 TFIIH C1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012510)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 1033
AccB7I CCANNNNNTGG 1 cut(s) 548
AccII CGCG 1 cut(s) 558
AciI CCGC 9 cut(s) 59, 184, 204, 207, 284, 556, 711, 957, 980
AclWI GGATC 3 cut(s) 96, 590, 759
AcoI YGGCCR 2 cut(s) 143, 321
AcsI RAATTY 2 cut(s) 794, 808
AfaI GTAC 3 cut(s) 220, 519, 575
AfiI CCNNNNNNNGG 4 cut(s) 106, 548, 700, 940
AflIII ACRYGT 4 cut(s) 328, 590, 900, 1142
AgsI TTSAA 4 cut(s) 623, 764, 852, 1047
AjnI CCWGG 5 cut(s) 104, 534, 598, 699, 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AluBI AGCT 9 cut(s) 86, 281, 338, 479, 581, 839, 893, 920, 1200
AluI AGCT 9 cut(s) 86, 281, 338, 479, 581, 839, 893, 920, 1200
Alw26I GTCTC 3 cut(s) 394, 437, 608
AlwI GGATC 3 cut(s) 96, 590, 759
Ama87I CYCGRG 2 cut(s) 273, 921
AoxI GGCC 2 cut(s) 143, 321
ApeKI GCWGC 5 cut(s) 209, 212, 278, 281, 839
ApoI RAATTY 2 cut(s) 794, 808
AspLEI GCGC 2 cut(s) 412, 772
AsuHPI GGTGA 3 cut(s) 497, 545, 1223
AvaI CYCGRG 2 cut(s) 273, 921
BaeGI GKGCMC 1 cut(s) 908
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 1 cut(s) 1033
BanII GRGCYC 1 cut(s) 666
BauI CACGAG 1 cut(s) 1193
BbsI GAAGAC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 5 cut(s) 196, 199, 268, 290, 826
BccI CCATC 6 cut(s) 304, 457, 550, 814, 1008, 1249
BceAI ACGGC 2 cut(s) 158, 171
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 5 cut(s) 106, 536, 600, 701, 1215
BciVI GTATCC 1 cut(s) 236
BclI TGATCA 1 cut(s) 813
BcoDI GTCTC 3 cut(s) 394, 437, 608
BfmI CTRYAG 1 cut(s) 669
BfuI GTATCC 1 cut(s) 236
BglII AGATCT 1 cut(s) 424
BisI GCNGC 8 cut(s) 184, 207, 210, 213, 279, 282, 840, 980
BlsI GCNGC 8 cut(s) 185, 208, 211, 214, 280, 283, 841, 981
Bme1390I CCNGG 5 cut(s) 106, 536, 600, 701, 1215
BmeT110I CYCGRG 2 cut(s) 273, 921
BmiI GGNNCC 2 cut(s) 540, 1035
BmrFI CCNGG 5 cut(s) 106, 536, 600, 701, 1215
BmsI GCATC 4 cut(s) 46, 535, 751, 902
BpiI GAAGAC 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 843
BsaI GGTCTC 2 cut(s) 394, 608
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 548, 700, 940
Bse1I ACTGG 1 cut(s) 712
BseBI CCWGG 5 cut(s) 106, 536, 600, 701, 1215
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 3 cut(s) 130, 315, 1188
BseLI CCNNNNNNNGG 4 cut(s) 106, 548, 700, 940
BseMII CTCAG 5 cut(s) 188, 362, 432, 591, 834
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 2 cut(s) 125, 481
BseSI GKGCMC 1 cut(s) 908
BseXI GCAGC 5 cut(s) 196, 199, 268, 290, 826
BsgI GTGCAG 2 cut(s) 1023, 1134
Bsh1236I CGCG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 145, 323
BshNI GGYRCC 1 cut(s) 1033
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 2 cut(s) 273, 921
BsiSI CCGG 2 cut(s) 307, 782
BslFI GGGAC 3 cut(s) 249, 1115, 1221
BslI CCNNNNNNNGG 4 cut(s) 106, 548, 700, 940
BsmAI GTCTC 3 cut(s) 394, 437, 608
BsmFI GGGAC 3 cut(s) 249, 1115, 1221
BsmI GAATGC 2 cut(s) 950, 1227
BsnI GGCC 2 cut(s) 145, 323
Bso31I GGTCTC 2 cut(s) 394, 608
BsoBI CYCGRG 2 cut(s) 273, 921
Bsp1286I GDGCHC 2 cut(s) 666, 908
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 7 cut(s) 20, 101, 424, 595, 751, 813, 992
BspACI CCGC 9 cut(s) 59, 184, 204, 207, 284, 556, 711, 957, 980
BspANI GGCC 2 cut(s) 145, 323
BspCNI CTCAG 5 cut(s) 187, 363, 433, 590, 835
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 540, 1035
BspMAI CTGCAG 1 cut(s) 673
BspPI GGATC 3 cut(s) 96, 590, 759
BspT107I GGYRCC 1 cut(s) 1033
BspTNI GGTCTC 2 cut(s) 394, 608
BsrGI TGTACA 1 cut(s) 517
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 7 cut(s) 20, 101, 424, 595, 751, 813, 992
BssSI CACGAG 1 cut(s) 1193
Bst2BI CACGAG 1 cut(s) 1193
Bst2UI CCWGG 5 cut(s) 106, 536, 600, 701, 1215
Bst4CI ACNGT 4 cut(s) 158, 1178, 1211, 1235
Bst6I CTCTTC 2 cut(s) 36, 1013
BstAPI GCANNNNNTGC 2 cut(s) 797, 954
BstAUI TGTACA 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 1038, 1157
BstDEI CTNAG 5 cut(s) 174, 371, 441, 577, 843
BstEII GGTNACC 1 cut(s) 551
BstENI CCTNNNNNAGG 1 cut(s) 698
BstF5I GGATG 3 cut(s) 130, 315, 1188
BstFNI CGCG 1 cut(s) 558
BstHHI GCGC 2 cut(s) 412, 772
BstKTI GATC 7 cut(s) 23, 104, 427, 598, 754, 816, 995
BstMAI GTCTC 3 cut(s) 394, 437, 608
BstMBI GATC 7 cut(s) 20, 101, 424, 595, 751, 813, 992
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 7 cut(s) 212, 320, 797, 912, 954, 1101, 1224
BstNI CCWGG 5 cut(s) 106, 536, 600, 701, 1215
BstNSI RCATGY 5 cut(s) 332, 594, 770, 904, 1146
BstPI GGTNACC 1 cut(s) 551
BstSCI CCNGG 5 cut(s) 104, 534, 598, 699, 1213
BstSFI CTRYAG 1 cut(s) 669
BstSLI GKGCMC 1 cut(s) 908
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 5 cut(s) 196, 199, 268, 290, 826
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 2 cut(s) 424, 751
BstXI CCANNNNNNTGG 1 cut(s) 707
BstYI RGATCY 2 cut(s) 424, 751
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 2 cut(s) 145, 323
BtsCI GGATG 3 cut(s) 130, 315, 1188
BtsI GCAGTG 1 cut(s) 735
BtsIMutI CAGTG 2 cut(s) 163, 735
Cac8I GCNNGC 2 cut(s) 1038, 1157
CfoI GCGC 2 cut(s) 412, 772
CsiI ACCWGGT 1 cut(s) 534
Csp6I GTAC 3 cut(s) 219, 518, 574
CviAII CATG 9 cut(s) 170, 329, 521, 591, 610, 767, 901, 1134, 1143
CviQI GTAC 3 cut(s) 219, 518, 574
DdeI CTNAG 5 cut(s) 174, 371, 441, 577, 843
DpnI GATC 7 cut(s) 22, 103, 426, 597, 753, 815, 994
DpnII GATC 7 cut(s) 20, 101, 424, 595, 751, 813, 992
EaeI YGGCCR 2 cut(s) 143, 321
Eam1104I CTCTTC 2 cut(s) 36, 1013
EarI CTCTTC 2 cut(s) 36, 1013
EciI GGCGGA 2 cut(s) 193, 726
Eco24I GRGCYC 1 cut(s) 666
Eco31I GGTCTC 2 cut(s) 394, 608
Eco32I GATATC 2 cut(s) 248, 607
Eco88I CYCGRG 2 cut(s) 273, 921
Eco91I GGTNACC 1 cut(s) 551
EcoNI CCTNNNNNAGG 1 cut(s) 698
EcoO65I GGTNACC 1 cut(s) 551
EcoRII CCWGG 5 cut(s) 104, 534, 598, 699, 1213
EcoRV GATATC 2 cut(s) 248, 607
EcoT38I GRGCYC 1 cut(s) 666
FaeI CATG 9 cut(s) 173, 332, 524, 594, 613, 770, 904, 1137, 1146
FaqI GGGAC 3 cut(s) 249, 1115, 1221
FatI CATG 9 cut(s) 169, 328, 520, 590, 609, 766, 900, 1133, 1142
FauNDI CATATG 1 cut(s) 683
FbaI TGATCA 1 cut(s) 813
Fnu4HI GCNGC 8 cut(s) 184, 207, 210, 213, 279, 282, 840, 980
FokI GGATG 3 cut(s) 137, 322, 1175
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 8 cut(s) 184, 207, 210, 213, 279, 282, 840, 980
FspI TGCGCA 1 cut(s) 411
GlaI GCGC 2 cut(s) 411, 771
GluI GCNGC 8 cut(s) 184, 207, 210, 213, 279, 282, 840, 980
HaeIII GGCC 2 cut(s) 145, 323
HapII CCGG 2 cut(s) 307, 782
HhaI GCGC 2 cut(s) 412, 772
Hin1II CATG 9 cut(s) 173, 332, 524, 594, 613, 770, 904, 1137, 1146
Hin6I GCGC 2 cut(s) 410, 770
HinP1I GCGC 2 cut(s) 410, 770
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 336, 477
HinfI GANTC 5 cut(s) 128, 364, 373, 445, 488
HpaII CCGG 2 cut(s) 307, 782
HphI GGTGA 3 cut(s) 497, 545, 1223
Hpy166II GTNNAC 3 cut(s) 94, 689, 733
Hpy188I TCNGA 5 cut(s) 299, 372, 567, 1053, 1065
Hpy188III TCNNGA 6 cut(s) 132, 440, 509, 817, 1012, 1172
Hpy8I GTNNAC 3 cut(s) 94, 689, 733
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 4 cut(s) 158, 1178, 1211, 1235
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 320, 797, 912, 954, 1101, 1224
HpyF3I CTNAG 5 cut(s) 174, 371, 441, 577, 843
Hsp92II CATG 9 cut(s) 173, 332, 524, 594, 613, 770, 904, 1137, 1146
HspAI GCGC 2 cut(s) 410, 770
Ksp22I TGATCA 1 cut(s) 813
Kzo9I GATC 7 cut(s) 20, 101, 424, 595, 751, 813, 992
LmnI GCTCC 2 cut(s) 890, 1024
Lsp1109I GCAGC 5 cut(s) 196, 199, 268, 290, 826
LweI GCATC 4 cut(s) 46, 535, 751, 902
MabI ACCWGGT 1 cut(s) 534
MaeIII GTNAC 6 cut(s) 485, 551, 896, 929, 1138, 1178
MalI GATC 7 cut(s) 22, 103, 426, 597, 753, 815, 994
MboI GATC 7 cut(s) 20, 101, 424, 595, 751, 813, 992
MboII GAAGA 7 cut(s) 50, 53, 65, 182, 746, 966, 1000
MfeI CAATTG 2 cut(s) 147, 801
MflI RGATCY 2 cut(s) 424, 751
MhlI GDGCHC 2 cut(s) 666, 908
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 9 cut(s) 147, 378, 641, 657, 794, 801, 808, 1070, 1107
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 4 cut(s) 137, 382, 439, 482
MmeI TCCRAC 1 cut(s) 453
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MseI TTAA 3 cut(s) 419, 644, 882
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 209, 281
MspI CCGG 2 cut(s) 307, 782
MspR9I CCNGG 5 cut(s) 106, 536, 600, 701, 1215
MunI CAATTG 2 cut(s) 147, 801
Mva1269I GAATGC 2 cut(s) 950, 1227
MvaI CCWGG 5 cut(s) 106, 536, 600, 701, 1215
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 7 cut(s) 212, 320, 797, 912, 954, 1101, 1224
NdeI CATATG 1 cut(s) 683
NdeII GATC 7 cut(s) 20, 101, 424, 595, 751, 813, 992
NlaIII CATG 9 cut(s) 173, 332, 524, 594, 613, 770, 904, 1137, 1146
NlaIV GGNNCC 2 cut(s) 540, 1035
NmuCI GTSAC 4 cut(s) 485, 551, 929, 1178
NsbI TGCGCA 1 cut(s) 411
NspI RCATGY 5 cut(s) 332, 594, 770, 904, 1146
PciI ACATGT 4 cut(s) 328, 590, 900, 1142
PctI GAATGC 2 cut(s) 950, 1227
PfeI GAWTC 1 cut(s) 364
PflMI CCANNNNNTGG 1 cut(s) 548
PkrI GCNGC 8 cut(s) 185, 208, 211, 214, 280, 283, 841, 981
PleI GAGTC 4 cut(s) 136, 381, 439, 482
PpsI GAGTC 4 cut(s) 136, 381, 439, 482
PscI ACATGT 4 cut(s) 328, 590, 900, 1142
Psp6I CCWGG 5 cut(s) 104, 534, 598, 699, 1213
PspEI GGTNACC 1 cut(s) 551
PspGI CCWGG 5 cut(s) 104, 534, 598, 699, 1213
PspN4I GGNNCC 2 cut(s) 540, 1035
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 2 cut(s) 424, 751
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 3 cut(s) 220, 519, 575
RsaNI GTAC 3 cut(s) 219, 518, 574
SaqAI TTAA 3 cut(s) 419, 644, 882
SatI GCNGC 8 cut(s) 184, 207, 210, 213, 279, 282, 840, 980
Sau3AI GATC 7 cut(s) 20, 101, 424, 595, 751, 813, 992
SchI GAGTC 4 cut(s) 137, 382, 439, 482
ScrFI CCNGG 5 cut(s) 106, 536, 600, 701, 1215
SduI GDGCHC 2 cut(s) 666, 908
SexAI ACCWGGT 1 cut(s) 534
SfaNI GCATC 4 cut(s) 46, 535, 751, 902
SfcI CTRYAG 1 cut(s) 669
Sse9I AATT 9 cut(s) 147, 378, 641, 657, 794, 801, 808, 1070, 1107
SsiI CCGC 9 cut(s) 59, 184, 204, 207, 284, 556, 711, 957, 980
StyD4I CCNGG 5 cut(s) 104, 534, 598, 699, 1213
TaaI ACNGT 4 cut(s) 158, 1178, 1211, 1235
TaqI TCGA 2 cut(s) 244, 333
TaqII GACCGA 1 cut(s) 114
TasI AATT 9 cut(s) 147, 378, 641, 657, 794, 801, 808, 1070, 1107
TatI WGTACW 2 cut(s) 517, 573
TauI GCSGC 3 cut(s) 186, 209, 982
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 3 cut(s) 419, 644, 882
Tru9I TTAA 3 cut(s) 419, 644, 882
TscAI CASTG 2 cut(s) 163, 735
TseFI GTSAC 4 cut(s) 485, 551, 929, 1178
TseI GCWGC 5 cut(s) 209, 212, 278, 281, 839
Tsp45I GTSAC 4 cut(s) 485, 551, 929, 1178
TspDTI ATGAA 3 cut(s) 45, 331, 670
TspGWI ACGGA 1 cut(s) 956
TspRI CASTG 2 cut(s) 163, 735
Van91I CCANNNNNTGG 1 cut(s) 548
XagI CCTNNNNNAGG 1 cut(s) 698
XapI RAATTY 2 cut(s) 794, 808
XceI RCATGY 5 cut(s) 332, 594, 770, 904, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.