Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012510

Physical Location & Seq

Genomic Coordinates Forward (+)

68077803 .. 68079012

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG392700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCTCTCCGCTTGGGAACGTGCTTACGCCGACGAGCGCTCTTGGGAGTCACTGCAAGAGGACGAGTCTGGCCTTCTTCGCCCCATTGACAACTAGAACCTCCAACACGTCCAGTACCGCCGCCGCCTCCGCTTCGCCAGCACCACTTGGAAACAAAAGGGCAGCTTTGGAAATGGATTTTCGACCTAACCGAATTGGTGTGGTTGCGAAGCATGTTGAGGCTTTCATTAGAGAGCATTTCTACCAGAATTCGCTCAGTCAAGTAGGCCTTGTGACTATAAAAGATAAGGTTGCTCATATTTTAACGGATCTCGGTGGGAGTCCCGAGTCTCATGTTAAACCTCTGATAGGTAAACTGGATTGCTCAGGCGACGCGTCCCTGGAGAATGCACTGGATCTTGTTCAAGGGTATATAAATCAGATTCCATCCTATGGTCACGGGGAAGTTCTGATCATGTATTCAGCTCTCAGTTGTGATCCAGGAGACATAATGGAAACTATTCAGAATCCTGTTGAAGTTCATCACCATATAAAGATGCATCTTTCCAAACCATGGAGACATGAAAAGAAAACGAAAAATATAAGAATTGAAACCAAAAAGGAATTGGGGAAAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

C1_4 Ssl1

Protein Analysis

207

Amino Acids

22.54

Weight (kDa)

9.12

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssl1	PF04056	54 - 173	3.6e-39	Ssl1-like
VWA_2	PF13519	59 - 153	4.8e-06	von Willebrand factor type A domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05055
fragaria_vesca	FvH4_3g32970
malus_domestica	MD03G1112800.v1.1 MD11G1132000.v1.1
prunus_persica	Prupe.6G097100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060301
rosa_laevigata	RLG00000035300 RLG00000035353
rosa_multiflora	Rmu_co8508299.1_g000001 Rmu_sc0003366.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020480
rosa_rugosa	Rorug05G0328500
rosa_samantha	Rh5AG392700 Rh5AG393200 Rh5BG405800 Rh5CG429300 Rh5CG429700 Rh5DG420800
rosa_wichuraiana	Rw5G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	434, 555
AccII	CGCG	1 cut(s)	377
AciI	CCGC	5 cut(s)	11, 120, 123, 126, 132
AclWI	GGATC	3 cut(s)	318, 405, 473
AcsI	RAATTY	1 cut(s)	250
AfaI	GTAC	1 cut(s)	118
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	350, 434, 555
AflIII	ACRYGT	2 cut(s)	108, 375
AgsI	TTSAA	3 cut(s)	407, 518, 593
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	381, 481
AluBI	AGCT	2 cut(s)	167, 467
AluI	AGCT	2 cut(s)	167, 467
Alw26I	GTCTC	3 cut(s)	336, 480, 553
AlwI	GGATC	3 cut(s)	318, 405, 473
Ama87I	CYCGRG	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	3 cut(s)	3, 72, 268
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	436
BciT130I	CCWGG	2 cut(s)	383, 483
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	3 cut(s)	336, 480, 553
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	3 cut(s)	123, 126, 165
BlsI	GCNGC	3 cut(s)	124, 127, 166
Bme1390I	CCNGG	2 cut(s)	383, 483
BmeT110I	CYCGRG	1 cut(s)	326
BmgBI	CACGTC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	383, 483
BmsI	GCATC	2 cut(s)	528, 550
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	381, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 434, 555
Bse1I	ACTGG	3 cut(s)	114, 363, 399
BseBI	CCWGG	2 cut(s)	383, 483
BseDI	CCNNGG	2 cut(s)	381, 554
BseGI	GGATG	1 cut(s)	428
BseLI	CCNNNNNNNGG	3 cut(s)	350, 434, 555
BseMII	CTCAG	3 cut(s)	271, 381, 484
BseNI	ACTGG	3 cut(s)	114, 363, 399
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	3 cut(s)	5, 74, 270
BsiHKCI	CYCGRG	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	309, 364
BslI	CCNNNNNNNGG	3 cut(s)	350, 434, 555
BsmAI	GTCTC	3 cut(s)	336, 480, 553
BsmFI	GGGAC	2 cut(s)	309, 364
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	3 cut(s)	5, 74, 270
BsoBI	CYCGRG	1 cut(s)	326
Bsp143I	GATC	4 cut(s)	310, 397, 453, 478
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	5 cut(s)	11, 120, 123, 126, 132
BspANI	GGCC	3 cut(s)	5, 74, 270
BspCNI	CTCAG	3 cut(s)	270, 380, 483
BspFNI	CGCG	1 cut(s)	377
BspPI	GGATC	3 cut(s)	318, 405, 473
BsrI	ACTGG	3 cut(s)	114, 363, 399
BssECI	CCNNGG	2 cut(s)	381, 554
BssMI	GATC	4 cut(s)	310, 397, 453, 478
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	2 cut(s)	383, 483
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	257, 367, 470
BstDSI	CCRYGG	1 cut(s)	554
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	428
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	313, 400, 456, 481
BstMAI	GTCTC	3 cut(s)	336, 480, 553
BstMBI	GATC	4 cut(s)	310, 397, 453, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 131, 140
BstNI	CCWGG	2 cut(s)	383, 483
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	381, 481
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	310, 397
BstYI	RGATCY	2 cut(s)	310, 397
BsuRI	GGCC	3 cut(s)	5, 74, 270
BtgI	CCRYGG	1 cut(s)	554
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 392
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	1 cut(s)	41
CseI	GACGC	2 cut(s)	366, 383
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	5 cut(s)	215, 335, 457, 555, 563
CviJI	RGCY	6 cut(s)	5, 74, 167, 224, 270, 467
CviKI_1	RGCY	6 cut(s)	5, 74, 167, 224, 270, 467
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	3 cut(s)	257, 367, 470
DpnI	GATC	4 cut(s)	312, 399, 455, 480
DpnII	GATC	4 cut(s)	310, 397, 453, 478
Eco130I	CCWWGG	1 cut(s)	554
Eco147I	AGGCCT	1 cut(s)	270
Eco47III	AGCGCT	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	381, 481
EcoT14I	CCWWGG	1 cut(s)	554
EcoT22I	ATGCAT	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	5 cut(s)	218, 338, 460, 558, 566
FalI	AAGNNNNNCTT	4 cut(s)	151, 183, 255, 287
FaqI	GGGAC	2 cut(s)	309, 364
FatI	CATG	5 cut(s)	214, 334, 456, 554, 562
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	3 cut(s)	123, 126, 165
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	3 cut(s)	123, 126, 165
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	3 cut(s)	123, 126, 165
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	5, 74, 270
HgaI	GACGC	2 cut(s)	366, 383
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	5 cut(s)	218, 338, 460, 558, 566
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	6 cut(s)	49, 67, 322, 329, 424, 508
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	4 cut(s)	348, 423, 453, 507
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	2 cut(s)	37, 377
HpyAV	CCTTC	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	21, 110
HpyCH4V	TGCA	3 cut(s)	57, 392, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 131, 140
HpyF3I	CTNAG	3 cut(s)	257, 367, 470
HpySE526I	ACGT	2 cut(s)	21, 110
Hsp92II	CATG	5 cut(s)	218, 338, 460, 558, 566
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	310, 397, 453, 478
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	2 cut(s)	528, 550
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	2 cut(s)	21, 110
MaeIII	GTNAC	3 cut(s)	50, 274, 437
MalI	GATC	4 cut(s)	312, 399, 455, 480
MboI	GATC	4 cut(s)	310, 397, 453, 478
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	2 cut(s)	310, 397
MluCI	AATT	4 cut(s)	195, 250, 588, 605
MluI	ACGCGT	1 cut(s)	375
MlyI	GAGTC	4 cut(s)	58, 76, 331, 338
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	16, 54, 112, 139, 214, 354
Mph1103I	ATGCAT	1 cut(s)	543
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	305, 339
MspR9I	CCNGG	2 cut(s)	383, 483
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	383, 483
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	80, 131, 140
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	4 cut(s)	310, 397, 453, 478
NlaIII	CATG	5 cut(s)	218, 338, 460, 558, 566
NmuCI	GTSAC	3 cut(s)	50, 274, 437
NsiI	ATGCAT	1 cut(s)	543
NspI	RCATGY	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	424, 508
PflMI	CCANNNNNTGG	2 cut(s)	434, 555
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	124, 127, 166
PleI	GAGTC	4 cut(s)	57, 75, 330, 337
PpsI	GAGTC	4 cut(s)	57, 75, 330, 337
Psp6I	CCWGG	2 cut(s)	381, 481
PspGI	CCWGG	2 cut(s)	381, 481
PsuI	RGATCY	2 cut(s)	310, 397
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	305, 339
SatI	GCNGC	3 cut(s)	123, 126, 165
Sau3AI	GATC	4 cut(s)	310, 397, 453, 478
SchI	GAGTC	4 cut(s)	58, 76, 331, 338
ScrFI	CCNGG	2 cut(s)	383, 483
SetI	ASST	9 cut(s)	24, 104, 113, 169, 190, 294, 346, 355, 469
SfaNI	GCATC	2 cut(s)	528, 550
Sse9I	AATT	4 cut(s)	195, 250, 588, 605
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	5 cut(s)	11, 120, 123, 126, 132
SspMI	CTAG	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	381, 481
StyI	CCWWGG	1 cut(s)	554
TaiI	ACGT	2 cut(s)	24, 113
TaqI	TCGA	1 cut(s)	184
TasI	AATT	4 cut(s)	195, 250, 588, 605
TauI	GCSGC	2 cut(s)	125, 128
TfiI	GAWTC	2 cut(s)	424, 508
Tru1I	TTAA	2 cut(s)	305, 339
Tru9I	TTAA	2 cut(s)	305, 339
TscAI	CASTG	2 cut(s)	59, 399
TseFI	GTSAC	3 cut(s)	50, 274, 437
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	3 cut(s)	50, 274, 437
TspDTI	ATGAA	3 cut(s)	217, 512, 579
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	59, 399
Van91I	CCANNNNNTGG	2 cut(s)	434, 555
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.