Prupe.6G097100_v2.0.a1

General transcription factor IIH

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
6759588 .. 6762809
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G097100.1

Sequence Viewer

Length: 1263 bp
ATGAACAACGGCGAGCAAAGACGCTTAAATGGAGAGGCAGAGGAAGACGAAGAGGAAGACGATGCAAACAATGGAGGCCTCGCTGCTTGGGAACGAGCCTACGCTGATGAGAGGTCATGGGAGTCACTGCAAGAGGACGAGTCTGGGCTTCTTCAGCCCATTGACAACCAGAGCCTTAAACATGCTCAGTACCGTCGTCGCCTTCGTGCTGCCTCCACTGCTCGAATTCAAAAGGGTCTTATTCGTTATGTTTACATTGTTATCGACCTCTCTAAGGCTGCTGCGGAAATGGATTTTCGACCAAGCCGAATGGGCGTGGTTGCAAAACATGTTGAGGCTTTCATTATAGAGTTTTTTTACCAGAATCCGCTTAGTCAAGTTGGCCTGGTGACTATAAAAGACGGTGTTGCTCATTGCTTAACGGATCTTGGTGGCAGTCCCAATTCTCATGTTAAAGCTTTGATGGGTAAGCTGGAATGCTCAGGTGACTCGTCCCTACAGAACGCATTGGATCTTGTACATGGGTATCTGGAACAGATTCCATCATATGGTCATAGAGAAGTTCTGATCTTATATTCAGCTCTCAGTACCTGTGATCCAGGAGATATAATGGAAACTATCCAGAAATGTAAGAAATCCAAAATTAGGTGCTCAGTTATTGGTCTCTCAGCAGAAATTTTCATATGCAAACATCTATGCCAGGAAACTGGTGGCTTGTACTATATTGCATTGGATGAGCCACACTTAAAAGAGTTAATCTTGGAACATGCACCTCCACCACCAGCAATAGCAGAATTTGCAATTGCTAATTTGATAAAGATGGGCTTCCCACAAAGAGCGGCAGAGGGCTCTGTGGCAATTTGTTCATGTCACAAGGAGGCAAAGGTCGGAGGTGGATACACTTGTCCAAGGTGCAAGGCACGTGTATGTGACCTACCTACTGAATGTCGCATTTGTGGGTTGACGCTTATTTCTTCTCCTCATTTGGCAAGGTCTTATCATCATCTTTTCCCCATTGTGCCATTTGATGAGGTCTCTCCGTCACTACTAATTGATCAACAAAACAAGTTTCCTAGAGCTTGTTTTGGCTGCCAACAGAGTCTTCTCAATCCCGGAAACAAACCCAGCCTTCGTGTTGCTTGTCCAAAATGCAAACAGCACTTCTGCCTTGATTGTGACATTTATATTCATGACAGCTTGCATAACTGCCCAGGTTGTGAGAGCGCCAGCCATTCCAAGATACCAAATGCTAACAAAGGATGA

Protein Analysis

421

Amino Acids

46.37

Weight (kDa)

6.19

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012510)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 548
AccBSI CCGCTC 1 cut(s) 839
AciI CCGC 3 cut(s) 284, 368, 839
AclWI GGATC 3 cut(s) 432, 519, 590
AcsI RAATTY 3 cut(s) 225, 675, 794
AcuI CTGAAG 1 cut(s) 137
AcvI CACGTG 1 cut(s) 923
AfaI GTAC 4 cut(s) 191, 519, 589, 719
AfiI CCNNNNNNNGG 3 cut(s) 274, 548, 645
AflIII ACRYGT 2 cut(s) 328, 922
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 4 cut(s) 384, 598, 699, 1210
AjuI GAANNNNNNNTTGG 2 cut(s) 1086, 1118
AluBI AGCT 5 cut(s) 458, 472, 581, 1079, 1197
AluI AGCT 5 cut(s) 458, 472, 581, 1079, 1197
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 2 cut(s) 668, 1039
AlwI GGATC 3 cut(s) 432, 519, 590
AlwNI CAGNNNCTG 1 cut(s) 591
AoxI GGCC 2 cut(s) 76, 382
ApeKI GCWGC 5 cut(s) 83, 209, 278, 281, 1089
ApoI RAATTY 3 cut(s) 225, 675, 794
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 1226
AsuC2I CCSGG 1 cut(s) 1113
AsuHPI GGTGA 2 cut(s) 400, 497
BaeI ACNNNNGTAYC 4 cut(s) 509, 542, 889, 922
BanII GRGCYC 1 cut(s) 851
BbrPI CACGTG 1 cut(s) 923
BbsI GAAGAC 3 cut(s) 51, 63, 1094
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 5 cut(s) 70, 196, 265, 268, 1076
BccI CCATC 3 cut(s) 457, 550, 814
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 4 cut(s) 386, 600, 701, 1212
BciVI GTATCC 1 cut(s) 890
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 1113
BcoDI GTCTC 2 cut(s) 668, 1039
BfaI CTAG 1 cut(s) 1074
BfmI CTRYAG 1 cut(s) 497
BfoI RGCGCY 1 cut(s) 1227
BfuI GTATCC 1 cut(s) 890
BglI GCCNNNNNGGC 1 cut(s) 312
BisI GCNGC 6 cut(s) 84, 210, 279, 282, 840, 1090
BlsI GCNGC 6 cut(s) 85, 211, 280, 283, 841, 1091
Bme1390I CCNGG 5 cut(s) 386, 600, 701, 1113, 1212
BmrFI CCNGG 5 cut(s) 386, 600, 701, 1113, 1212
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 3 cut(s) 51, 63, 1094
Bpu10I CCTNAGC 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 1113
BsaAI YACGTR 1 cut(s) 923
BsaI GGTCTC 2 cut(s) 668, 1039
BsaJI CCNNGG 2 cut(s) 908, 1210
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 548, 645
Bse1I ACTGG 1 cut(s) 712
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 4 cut(s) 386, 600, 701, 1212
BseDI CCNNGG 2 cut(s) 908, 1210
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 3 cut(s) 274, 548, 645
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 5 cut(s) 200, 495, 598, 666, 681
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 1 cut(s) 969
BseXI GCAGC 5 cut(s) 70, 196, 265, 268, 1076
BseYI CCCAGC 1 cut(s) 1124
BshFI GGCC 2 cut(s) 78, 384
BsiHKAI GWGCWC 1 cut(s) 653
BsiSI CCGG 1 cut(s) 1113
BslFI GGGAC 2 cut(s) 423, 478
BslI CCNNNNNNNGG 3 cut(s) 274, 548, 645
BsmAI GTCTC 2 cut(s) 668, 1039
BsmFI GGGAC 2 cut(s) 423, 478
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 2 cut(s) 78, 384
Bso31I GGTCTC 2 cut(s) 668, 1039
Bsp1286I GDGCHC 2 cut(s) 653, 851
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 5 cut(s) 424, 511, 567, 595, 1054
BspACI CCGC 3 cut(s) 284, 368, 839
BspANI GGCC 2 cut(s) 78, 384
BspCNI CTCAG 5 cut(s) 199, 494, 597, 665, 680
BspHI TCATGA 1 cut(s) 1189
BspPI GGATC 3 cut(s) 432, 519, 590
BspTNI GGTCTC 2 cut(s) 668, 1039
BsrBI CCGCTC 1 cut(s) 839
BsrDI GCAATG 1 cut(s) 412
BsrGI TGTACA 1 cut(s) 517
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 2 cut(s) 908, 1210
BssMI GATC 5 cut(s) 424, 511, 567, 595, 1054
BssT1I CCWWGG 1 cut(s) 908
Bst2UI CCWGG 4 cut(s) 386, 600, 701, 1212
Bst4CI ACNGT 2 cut(s) 194, 404
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 797
BstAUI TGTACA 1 cut(s) 517
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 3 cut(s) 14, 1199, 1228
BstDEI CTNAG 7 cut(s) 186, 273, 371, 481, 584, 652, 667
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 739
BstH2I RGCGCY 1 cut(s) 1227
BstHHI GCGC 1 cut(s) 1226
BstKTI GATC 5 cut(s) 427, 514, 570, 598, 1057
BstMAI GTCTC 2 cut(s) 668, 1039
BstMBI GATC 5 cut(s) 424, 511, 567, 595, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 154, 218, 312, 797
BstNI CCWGG 4 cut(s) 386, 600, 701, 1212
BstNSI RCATGY 3 cut(s) 185, 332, 770
BstSCI CCNGG 5 cut(s) 384, 598, 699, 1111, 1210
BstSFI CTRYAG 1 cut(s) 497
BstV1I GCAGC 5 cut(s) 70, 196, 265, 268, 1076
BstV2I GAAGAC 3 cut(s) 51, 63, 1094
BstX2I RGATCY 2 cut(s) 424, 511
BstXI CCANNNNNNTGG 1 cut(s) 707
BstYI RGATCY 2 cut(s) 424, 511
BsuI GTATCC 1 cut(s) 890
BsuRI GGCC 2 cut(s) 78, 384
BtsCI GGATG 1 cut(s) 739
BtsI GCAGTG 2 cut(s) 125, 216
BtsIMutI CAGTG 2 cut(s) 125, 216
Cac8I GCNNGC 3 cut(s) 14, 1199, 1228
CaiI CAGNNNCTG 1 cut(s) 591
CciI TCATGA 1 cut(s) 1189
CfoI GCGC 1 cut(s) 1226
CseI GACGC 2 cut(s) 30, 973
Csp6I GTAC 4 cut(s) 190, 518, 588, 718
CviAII CATG 8 cut(s) 117, 182, 329, 449, 521, 767, 867, 1190
CviQI GTAC 4 cut(s) 190, 518, 588, 718
DdeI CTNAG 7 cut(s) 186, 273, 371, 481, 584, 652, 667
DpnI GATC 5 cut(s) 426, 513, 569, 597, 1056
DpnII GATC 5 cut(s) 424, 511, 567, 595, 1054
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 908
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 851
Eco31I GGTCTC 2 cut(s) 668, 1039
Eco57I CTGAAG 1 cut(s) 137
Eco72I CACGTG 1 cut(s) 923
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 4 cut(s) 384, 598, 699, 1210
EcoT14I CCWWGG 1 cut(s) 908
EcoT38I GRGCYC 1 cut(s) 851
ErhI CCWWGG 1 cut(s) 908
FaeI CATG 8 cut(s) 120, 185, 332, 452, 524, 770, 870, 1193
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 2 cut(s) 423, 478
FatI CATG 8 cut(s) 116, 181, 328, 448, 520, 766, 866, 1189
FauNDI CATATG 2 cut(s) 547, 683
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 6 cut(s) 84, 210, 279, 282, 840, 1090
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 1 cut(s) 851
Fsp4HI GCNGC 6 cut(s) 84, 210, 279, 282, 840, 1090
FspBI CTAG 1 cut(s) 1074
GlaI GCGC 1 cut(s) 1225
GluI GCNGC 6 cut(s) 84, 210, 279, 282, 840, 1090
GsaI CCCAGC 1 cut(s) 1128
HaeII RGCGCY 1 cut(s) 1227
HaeIII GGCC 2 cut(s) 78, 384
HapII CCGG 1 cut(s) 1113
HgaI GACGC 2 cut(s) 30, 973
HhaI GCGC 1 cut(s) 1226
Hin1II CATG 8 cut(s) 120, 185, 332, 452, 524, 770, 870, 1193
Hin6I GCGC 1 cut(s) 1224
HinP1I GCGC 1 cut(s) 1224
HincII GTYRAC 1 cut(s) 963
HindII GTYRAC 1 cut(s) 963
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 6 cut(s) 122, 140, 364, 488, 538, 1099
HpaII CCGG 1 cut(s) 1113
HphI GGTGA 2 cut(s) 400, 497
Hpy166II GTNNAC 2 cut(s) 253, 963
Hpy188I TCNGA 2 cut(s) 567, 890
Hpy188III TCNNGA 3 cut(s) 530, 622, 1190
Hpy8I GTNNAC 2 cut(s) 253, 963
Hpy99I CGWCG 2 cut(s) 198, 201
HpyAV CCTTC 2 cut(s) 212, 1139
HpyCH4III ACNGT 2 cut(s) 194, 404
HpyCH4IV ACGT 1 cut(s) 922
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 218, 312, 797
HpyF3I CTNAG 7 cut(s) 186, 273, 371, 481, 584, 652, 667
HpySE526I ACGT 1 cut(s) 922
Hsp92II CATG 8 cut(s) 120, 185, 332, 452, 524, 770, 870, 1193
HspAI GCGC 1 cut(s) 1224
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 5 cut(s) 424, 511, 567, 595, 1054
Lsp1109I GCAGC 5 cut(s) 70, 196, 265, 268, 1076
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 1074
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 7 cut(s) 123, 388, 485, 869, 929, 1041, 1175
MalI GATC 5 cut(s) 426, 513, 569, 597, 1056
MbiI CCGCTC 1 cut(s) 839
MboI GATC 5 cut(s) 424, 511, 567, 595, 1054
MboII GAAGA 6 cut(s) 56, 62, 68, 143, 966, 1094
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 2 cut(s) 424, 511
MhlI GDGCHC 2 cut(s) 653, 851
MluCI AATT 9 cut(s) 225, 442, 642, 675, 794, 801, 808, 858, 1050
MlyI GAGTC 4 cut(s) 131, 149, 482, 1108
MmeI TCCRAC 1 cut(s) 868
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 6 cut(s) 26, 177, 419, 453, 746, 755
MslI CAYNNNNRTG 1 cut(s) 925
MspI CCGG 1 cut(s) 1113
MspR9I CCNGG 5 cut(s) 386, 600, 701, 1113, 1212
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 4 cut(s) 386, 600, 701, 1212
MwoI GCNNNNNNNGC 4 cut(s) 154, 218, 312, 797
NciI CCSGG 1 cut(s) 1113
NdeI CATATG 2 cut(s) 547, 683
NdeII GATC 5 cut(s) 424, 511, 567, 595, 1054
NlaIII CATG 8 cut(s) 120, 185, 332, 452, 524, 770, 870, 1193
NmuCI GTSAC 7 cut(s) 123, 388, 485, 869, 929, 1041, 1175
NspI RCATGY 3 cut(s) 185, 332, 770
PagI TCATGA 1 cut(s) 1189
PceI AGGCCT 1 cut(s) 78
PciI ACATGT 1 cut(s) 328
PcsI WCGNNNNNNNCGW 2 cut(s) 202, 304
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 2 cut(s) 364, 538
PflMI CCANNNNNTGG 1 cut(s) 548
PfoI TCCNGGA 2 cut(s) 598, 1111
PkrI GCNGC 6 cut(s) 85, 211, 280, 283, 841, 1091
PleI GAGTC 4 cut(s) 130, 148, 482, 1107
PmaCI CACGTG 1 cut(s) 923
PmlI CACGTG 1 cut(s) 923
PpsI GAGTC 4 cut(s) 130, 148, 482, 1107
Ppu21I YACGTR 1 cut(s) 923
PscI ACATGT 1 cut(s) 328
Psp6I CCWGG 4 cut(s) 384, 598, 699, 1210
PspCI CACGTG 1 cut(s) 923
PspFI CCCAGC 1 cut(s) 1124
PspGI CCWGG 4 cut(s) 384, 598, 699, 1210
PstNI CAGNNNCTG 1 cut(s) 591
PsuI RGATCY 2 cut(s) 424, 511
RsaI GTAC 4 cut(s) 191, 519, 589, 719
RsaNI GTAC 4 cut(s) 190, 518, 588, 718
RseI CAYNNNNRTG 1 cut(s) 925
SaqAI TTAA 6 cut(s) 26, 177, 419, 453, 746, 755
SatI GCNGC 6 cut(s) 84, 210, 279, 282, 840, 1090
Sau3AI GATC 5 cut(s) 424, 511, 567, 595, 1054
SchI GAGTC 4 cut(s) 131, 149, 482, 1108
ScrFI CCNGG 5 cut(s) 386, 600, 701, 1113, 1212
SduI GDGCHC 2 cut(s) 653, 851
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 497
SmiMI CAYNNNNRTG 1 cut(s) 925
Sse9I AATT 9 cut(s) 225, 442, 642, 675, 794, 801, 808, 858, 1050
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 3 cut(s) 284, 368, 839
SspMI CTAG 1 cut(s) 1074
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 5 cut(s) 384, 598, 699, 1111, 1210
StyI CCWWGG 1 cut(s) 908
TaaI ACNGT 2 cut(s) 194, 404
TaiI ACGT 1 cut(s) 925
TaqI TCGA 3 cut(s) 223, 264, 298
TasI AATT 9 cut(s) 225, 442, 642, 675, 794, 801, 808, 858, 1050
TatI WGTACW 2 cut(s) 517, 717
TauI GCSGC 1 cut(s) 842
TfiI GAWTC 2 cut(s) 364, 538
Tru1I TTAA 6 cut(s) 26, 177, 419, 453, 746, 755
Tru9I TTAA 6 cut(s) 26, 177, 419, 453, 746, 755
TscAI CASTG 2 cut(s) 132, 223
TseFI GTSAC 7 cut(s) 123, 388, 485, 869, 929, 1041, 1175
TseI GCWGC 5 cut(s) 83, 209, 278, 281, 1089
Tsp45I GTSAC 7 cut(s) 123, 388, 485, 869, 929, 1041, 1175
TspDTI ATGAA 5 cut(s) 17, 331, 670, 855, 1178
TspGWI ACGGA 2 cut(s) 437, 1029
TspRI CASTG 2 cut(s) 132, 223
Van91I CCANNNNNTGG 1 cut(s) 548
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 3 cut(s) 225, 675, 794
XceI RCATGY 3 cut(s) 185, 332, 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.