General transcription factor IIH
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05055 |
| fragaria_vesca | FvH4_3g32970 |
| malus_domestica | MD03G1112800.v1.1 MD11G1132000.v1.1 |
| prunus_persica | Prupe.6G097100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0060301 |
| rosa_laevigata | RLG00000035300 RLG00000035353 |
| rosa_multiflora | Rmu_co8508299.1_g000001 Rmu_sc0003366.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00020480 |
| rosa_rugosa | Rorug05G0328500 |
| rosa_samantha | Rh5AG392700 Rh5AG393200 Rh5BG405800 Rh5CG429300 Rh5CG429700 Rh5DG420800 |
| rosa_wichuraiana | Rw5G037020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 204, 488, 921 |
| AclWI | GGATC | 3 cut(s) | 429, 516, 587 |
| AcsI | RAATTY | 3 cut(s) | 672, 791, 805 |
| AcuI | CTGAAG | 1 cut(s) | 264 |
| AfaI | GTAC | 4 cut(s) | 188, 586, 1017, 1222 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 219, 271, 545 |
| AflIII | ACRYGT | 2 cut(s) | 486, 587 |
| AgsI | TTSAA | 4 cut(s) | 128, 332, 518, 1233 |
| AjnI | CCWGG | 6 cut(s) | 113, 595, 1108, 1120, 1207, 1223 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1083, 1115 |
| AluBI | AGCT | 8 cut(s) | 278, 335, 455, 578, 846, 931, 1076, 1194 |
| AluI | AGCT | 8 cut(s) | 278, 335, 455, 578, 846, 931, 1076, 1194 |
| Alw21I | GWGCWC | 1 cut(s) | 848 |
| Alw26I | GTCTC | 5 cut(s) | 13, 239, 447, 665, 1036 |
| AlwI | GGATC | 3 cut(s) | 429, 516, 587 |
| AoxI | GGCC | 3 cut(s) | 73, 379, 1123 |
| ApeKI | GCWGC | 4 cut(s) | 275, 836, 1086, 1153 |
| ApoI | RAATTY | 3 cut(s) | 672, 791, 805 |
| AspLEI | GCGC | 1 cut(s) | 206 |
| AspS9I | GGNCC | 1 cut(s) | 1106 |
| AsuC2I | CCSGG | 1 cut(s) | 220 |
| AsuHPI | GGTGA | 2 cut(s) | 44, 966 |
| AvaII | GGWCC | 1 cut(s) | 1106 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 886, 919 |
| BanII | GRGCYC | 2 cut(s) | 713, 848 |
| BbsI | GAAGAC | 2 cut(s) | 51, 60 |
| Bbv12I | GWGCWC | 1 cut(s) | 848 |
| BbvI | GCAGC | 4 cut(s) | 287, 848, 1073, 1165 |
| BccI | CCATC | 6 cut(s) | 183, 280, 392, 454, 811, 884 |
| BceAI | ACGGC | 2 cut(s) | 25, 88 |
| BciT130I | CCWGG | 6 cut(s) | 115, 597, 1110, 1122, 1209, 1225 |
| BciVI | GTATCC | 1 cut(s) | 887 |
| BclI | TGATCA | 2 cut(s) | 564, 1051 |
| BcnI | CCSGG | 1 cut(s) | 220 |
| BcoDI | GTCTC | 5 cut(s) | 13, 239, 447, 665, 1036 |
| BfaI | CTAG | 2 cut(s) | 300, 527 |
| BfmI | CTRYAG | 1 cut(s) | 494 |
| BfuI | GTATCC | 1 cut(s) | 887 |
| BisI | GCNGC | 9 cut(s) | 81, 193, 196, 207, 276, 837, 1087, 1154, 1245 |
| BlsI | GCNGC | 9 cut(s) | 82, 194, 197, 208, 277, 838, 1088, 1155, 1246 |
| Bme1390I | CCNGG | 7 cut(s) | 115, 220, 597, 1110, 1122, 1209, 1225 |
| Bme18I | GGWCC | 1 cut(s) | 1106 |
| BmgT120I | GGNCC | 1 cut(s) | 1106 |
| BmiI | GGNNCC | 1 cut(s) | 712 |
| BmrFI | CCNGG | 7 cut(s) | 115, 220, 597, 1110, 1122, 1209, 1225 |
| BmrI | ACTGGG | 2 cut(s) | 178, 714 |
| BmsI | GCATC | 2 cut(s) | 635, 899 |
| BmuI | ACTGGG | 2 cut(s) | 178, 714 |
| BpiI | GAAGAC | 2 cut(s) | 51, 60 |
| BpmI | CTGGAG | 1 cut(s) | 762 |
| Bpu10I | CCTNAGC | 1 cut(s) | 478 |
| BpuMI | CCSGG | 1 cut(s) | 220 |
| BsaI | GGTCTC | 3 cut(s) | 239, 665, 1036 |
| BsaJI | CCNNGG | 3 cut(s) | 114, 596, 1207 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 219, 271, 545 |
| Bse1I | ACTGG | 3 cut(s) | 184, 474, 709 |
| BseBI | CCWGG | 6 cut(s) | 115, 597, 1110, 1122, 1209, 1225 |
| BseDI | CCNNGG | 3 cut(s) | 114, 596, 1207 |
| BseGI | GGATG | 1 cut(s) | 736 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 219, 271, 545 |
| BseMII | CTCAG | 5 cut(s) | 429, 492, 595, 663, 678 |
| BseNI | ACTGG | 3 cut(s) | 184, 474, 709 |
| BseRI | GAGGAG | 1 cut(s) | 74 |
| BseXI | GCAGC | 4 cut(s) | 287, 848, 1073, 1165 |
| Bsh1236I | CGCG | 3 cut(s) | 204, 488, 921 |
| BshFI | GGCC | 3 cut(s) | 75, 381, 1125 |
| BsiHKAI | GWGCWC | 1 cut(s) | 848 |
| BsiSI | CCGG | 1 cut(s) | 220 |
| BslFI | GGGAC | 1 cut(s) | 475 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 219, 271, 545 |
| BsmAI | GTCTC | 5 cut(s) | 13, 239, 447, 665, 1036 |
| BsmBI | CGTCTC | 1 cut(s) | 13 |
| BsmFI | GGGAC | 1 cut(s) | 475 |
| BsmI | GAATGC | 3 cut(s) | 479, 505, 1228 |
| BsnI | GGCC | 3 cut(s) | 75, 381, 1125 |
| Bso31I | GGTCTC | 3 cut(s) | 239, 665, 1036 |
| Bsp1286I | GDGCHC | 2 cut(s) | 713, 848 |
| Bsp143I | GATC | 6 cut(s) | 421, 508, 529, 564, 592, 1051 |
| BspANI | GGCC | 3 cut(s) | 75, 381, 1125 |
| BspCNI | CTCAG | 5 cut(s) | 430, 491, 594, 662, 677 |
| BspFNI | CGCG | 3 cut(s) | 204, 488, 921 |
| BspHI | TCATGA | 1 cut(s) | 1186 |
| BspLI | GGNNCC | 1 cut(s) | 712 |
| BspMAI | CTGCAG | 1 cut(s) | 498 |
| BspPI | GGATC | 3 cut(s) | 429, 516, 587 |
| BspTNI | GGTCTC | 3 cut(s) | 239, 665, 1036 |
| BsrI | ACTGG | 3 cut(s) | 184, 474, 709 |
| BssECI | CCNNGG | 3 cut(s) | 114, 596, 1207 |
| BssMI | GATC | 6 cut(s) | 421, 508, 529, 564, 592, 1051 |
| Bst2UI | CCWGG | 6 cut(s) | 115, 597, 1110, 1122, 1209, 1225 |
| Bst4CI | ACNGT | 3 cut(s) | 32, 1049, 1220 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 794 |
| BstC8I | GCNNGC | 3 cut(s) | 146, 919, 1196 |
| BstDEI | CTNAG | 7 cut(s) | 270, 368, 438, 478, 581, 649, 664 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 269 |
| BstF5I | GGATG | 1 cut(s) | 736 |
| BstFNI | CGCG | 3 cut(s) | 204, 488, 921 |
| BstHHI | GCGC | 1 cut(s) | 206 |
| BstKTI | GATC | 6 cut(s) | 424, 511, 532, 567, 595, 1054 |
| BstMAI | GTCTC | 5 cut(s) | 13, 239, 447, 665, 1036 |
| BstMBI | GATC | 6 cut(s) | 421, 508, 529, 564, 592, 1051 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 150, 201, 215, 794, 918 |
| BstNI | CCWGG | 6 cut(s) | 115, 597, 1110, 1122, 1209, 1225 |
| BstNSI | RCATGY | 3 cut(s) | 329, 591, 767 |
| BstSCI | CCNGG | 7 cut(s) | 113, 218, 595, 1108, 1120, 1207, 1223 |
| BstSFI | CTRYAG | 1 cut(s) | 494 |
| BstUI | CGCG | 3 cut(s) | 204, 488, 921 |
| BstV1I | GCAGC | 4 cut(s) | 287, 848, 1073, 1165 |
| BstV2I | GAAGAC | 2 cut(s) | 51, 60 |
| BstX2I | RGATCY | 2 cut(s) | 421, 508 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 704 |
| BstYI | RGATCY | 2 cut(s) | 421, 508 |
| BsuI | GTATCC | 1 cut(s) | 887 |
| BsuRI | GGCC | 3 cut(s) | 75, 381, 1125 |
| BtsCI | GGATG | 1 cut(s) | 736 |
| BtsI | GCAGTG | 1 cut(s) | 213 |
| BtsIMutI | CAGTG | 2 cut(s) | 213, 1054 |
| Cac8I | GCNNGC | 3 cut(s) | 146, 919, 1196 |
| CciI | TCATGA | 1 cut(s) | 1186 |
| CfoI | GCGC | 1 cut(s) | 206 |
| Cfr13I | GGNCC | 1 cut(s) | 1106 |
| CseI | GACGC | 3 cut(s) | 30, 477, 494 |
| Csp6I | GTAC | 4 cut(s) | 187, 585, 1016, 1221 |
| CviAII | CATG | 7 cut(s) | 326, 446, 568, 588, 764, 864, 1187 |
| CviQI | GTAC | 4 cut(s) | 187, 585, 1016, 1221 |
| DdeI | CTNAG | 7 cut(s) | 270, 368, 438, 478, 581, 649, 664 |
| DpnI | GATC | 6 cut(s) | 423, 510, 531, 566, 594, 1053 |
| DpnII | GATC | 6 cut(s) | 421, 508, 529, 564, 592, 1051 |
| EciI | GGCGGA | 1 cut(s) | 140 |
| Ecl136II | GAGCTC | 1 cut(s) | 846 |
| Eco147I | AGGCCT | 1 cut(s) | 381 |
| Eco24I | GRGCYC | 2 cut(s) | 713, 848 |
| Eco31I | GGTCTC | 3 cut(s) | 239, 665, 1036 |
| Eco47I | GGWCC | 1 cut(s) | 1106 |
| Eco53kI | GAGCTC | 1 cut(s) | 846 |
| Eco57I | CTGAAG | 1 cut(s) | 264 |
| EcoICRI | GAGCTC | 1 cut(s) | 846 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 269 |
| EcoRII | CCWGG | 6 cut(s) | 113, 595, 1108, 1120, 1207, 1223 |
| EcoT22I | ATGCAT | 1 cut(s) | 505 |
| EcoT38I | GRGCYC | 2 cut(s) | 713, 848 |
| Esp3I | CGTCTC | 1 cut(s) | 13 |
| FaeI | CATG | 7 cut(s) | 329, 449, 571, 591, 767, 867, 1190 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 366, 398, 1142, 1174 |
| FaqI | GGGAC | 1 cut(s) | 475 |
| FatI | CATG | 7 cut(s) | 325, 445, 567, 587, 763, 863, 1186 |
| FauI | CCCGC | 1 cut(s) | 926 |
| FauNDI | CATATG | 1 cut(s) | 680 |
| FbaI | TGATCA | 2 cut(s) | 564, 1051 |
| Fnu4HI | GCNGC | 9 cut(s) | 81, 193, 196, 207, 276, 837, 1087, 1154, 1245 |
| FokI | GGATG | 1 cut(s) | 743 |
| FriOI | GRGCYC | 2 cut(s) | 713, 848 |
| Fsp4HI | GCNGC | 9 cut(s) | 81, 193, 196, 207, 276, 837, 1087, 1154, 1245 |
| FspBI | CTAG | 2 cut(s) | 300, 527 |
| GlaI | GCGC | 1 cut(s) | 205 |
| GluI | GCNGC | 9 cut(s) | 81, 193, 196, 207, 276, 837, 1087, 1154, 1245 |
| GsuI | CTGGAG | 1 cut(s) | 762 |
| HaeIII | GGCC | 3 cut(s) | 75, 381, 1125 |
| HapII | CCGG | 1 cut(s) | 220 |
| HgaI | GACGC | 3 cut(s) | 30, 477, 494 |
| HhaI | GCGC | 1 cut(s) | 206 |
| Hin1II | CATG | 7 cut(s) | 329, 449, 571, 591, 767, 867, 1190 |
| Hin6I | GCGC | 1 cut(s) | 204 |
| HinP1I | GCGC | 1 cut(s) | 204 |
| HincII | GTYRAC | 1 cut(s) | 960 |
| HindII | GTYRAC | 1 cut(s) | 960 |
| HindIII | AAGCTT | 2 cut(s) | 333, 1074 |
| HinfI | GANTC | 8 cut(s) | 119, 137, 223, 361, 433, 440, 535, 734 |
| HpaII | CCGG | 1 cut(s) | 220 |
| HphI | GGTGA | 2 cut(s) | 44, 966 |
| Hpy166II | GTNNAC | 2 cut(s) | 467, 960 |
| Hpy188I | TCNGA | 7 cut(s) | 228, 283, 459, 534, 564, 621, 887 |
| Hpy188III | TCNNGA | 4 cut(s) | 128, 437, 527, 1187 |
| Hpy8I | GTNNAC | 2 cut(s) | 467, 960 |
| Hpy99I | CGWCG | 3 cut(s) | 74, 107, 488 |
| HpyAV | CCTTC | 4 cut(s) | 223, 549, 1136, 1247 |
| HpyCH4III | ACNGT | 3 cut(s) | 32, 1049, 1220 |
| HpyCH4V | TGCA | 9 cut(s) | 496, 503, 627, 684, 725, 767, 788, 912, 1198 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 150, 201, 215, 794, 918 |
| HpyF3I | CTNAG | 7 cut(s) | 270, 368, 438, 478, 581, 649, 664 |
| Hsp92II | CATG | 7 cut(s) | 329, 449, 571, 591, 767, 867, 1190 |
| HspAI | GCGC | 1 cut(s) | 204 |
| Ksp22I | TGATCA | 2 cut(s) | 564, 1051 |
| Kzo9I | GATC | 6 cut(s) | 421, 508, 529, 564, 592, 1051 |
| LmnI | GCTCC | 2 cut(s) | 153, 716 |
| Lsp1109I | GCAGC | 4 cut(s) | 287, 848, 1073, 1165 |
| LweI | GCATC | 2 cut(s) | 635, 899 |
| MaeI | CTAG | 2 cut(s) | 300, 527 |
| MaeIII | GTNAC | 9 cut(s) | 120, 385, 548, 735, 866, 1038, 1065, 1172, 1214 |
| MalI | GATC | 6 cut(s) | 423, 510, 531, 566, 594, 1053 |
| MboI | GATC | 6 cut(s) | 421, 508, 529, 564, 592, 1051 |
| MboII | GAAGA | 3 cut(s) | 53, 56, 65 |
| MfeI | CAATTG | 2 cut(s) | 783, 1011 |
| MflI | RGATCY | 2 cut(s) | 421, 508 |
| MhlI | GDGCHC | 2 cut(s) | 713, 848 |
| MluCI | AATT | 7 cut(s) | 639, 672, 783, 791, 805, 855, 1011 |
| MluI | ACGCGT | 1 cut(s) | 486 |
| MlyI | GAGTC | 5 cut(s) | 128, 146, 442, 449, 743 |
| MmeI | TCCRAC | 1 cut(s) | 865 |
| Mph1103I | ATGCAT | 1 cut(s) | 505 |
| MseI | TTAA | 5 cut(s) | 26, 416, 450, 743, 813 |
| MspI | CCGG | 1 cut(s) | 220 |
| MspR9I | CCNGG | 7 cut(s) | 115, 220, 597, 1110, 1122, 1209, 1225 |
| MunI | CAATTG | 2 cut(s) | 783, 1011 |
| Mva1269I | GAATGC | 3 cut(s) | 479, 505, 1228 |
| MvaI | CCWGG | 6 cut(s) | 115, 597, 1110, 1122, 1209, 1225 |
| MvnI | CGCG | 3 cut(s) | 204, 488, 921 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 150, 201, 215, 794, 918 |
| NciI | CCSGG | 1 cut(s) | 220 |
| NdeI | CATATG | 1 cut(s) | 680 |
| NdeII | GATC | 6 cut(s) | 421, 508, 529, 564, 592, 1051 |
| NlaIII | CATG | 7 cut(s) | 329, 449, 571, 591, 767, 867, 1190 |
| NlaIV | GGNNCC | 1 cut(s) | 712 |
| NmuCI | GTSAC | 8 cut(s) | 120, 385, 548, 735, 866, 1038, 1172, 1214 |
| NsiI | ATGCAT | 1 cut(s) | 505 |
| NspI | RCATGY | 3 cut(s) | 329, 591, 767 |
| PagI | TCATGA | 1 cut(s) | 1186 |
| PceI | AGGCCT | 1 cut(s) | 381 |
| PciI | ACATGT | 1 cut(s) | 587 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 36, 45, 54 |
| PctI | GAATGC | 3 cut(s) | 479, 505, 1228 |
| PfeI | GAWTC | 3 cut(s) | 223, 361, 535 |
| PfoI | TCCNGGA | 1 cut(s) | 1108 |
| PkrI | GCNGC | 9 cut(s) | 82, 194, 197, 208, 277, 838, 1088, 1155, 1246 |
| PleI | GAGTC | 5 cut(s) | 127, 145, 441, 448, 742 |
| PpsI | GAGTC | 5 cut(s) | 127, 145, 441, 448, 742 |
| PscI | ACATGT | 1 cut(s) | 587 |
| Psp124BI | GAGCTC | 1 cut(s) | 848 |
| Psp6I | CCWGG | 6 cut(s) | 113, 595, 1108, 1120, 1207, 1223 |
| PspGI | CCWGG | 6 cut(s) | 113, 595, 1108, 1120, 1207, 1223 |
| PspN4I | GGNNCC | 1 cut(s) | 712 |
| PspPI | GGNCC | 1 cut(s) | 1106 |
| PstI | CTGCAG | 1 cut(s) | 498 |
| PsuI | RGATCY | 2 cut(s) | 421, 508 |
| RsaI | GTAC | 4 cut(s) | 188, 586, 1017, 1222 |
| RsaNI | GTAC | 4 cut(s) | 187, 585, 1016, 1221 |
| SacI | GAGCTC | 1 cut(s) | 848 |
| SaqAI | TTAA | 5 cut(s) | 26, 416, 450, 743, 813 |
| SatI | GCNGC | 9 cut(s) | 81, 193, 196, 207, 276, 837, 1087, 1154, 1245 |
| Sau3AI | GATC | 6 cut(s) | 421, 508, 529, 564, 592, 1051 |
| Sau96I | GGNCC | 1 cut(s) | 1106 |
| SchI | GAGTC | 5 cut(s) | 128, 146, 442, 449, 743 |
| ScrFI | CCNGG | 7 cut(s) | 115, 220, 597, 1110, 1122, 1209, 1225 |
| SduI | GDGCHC | 2 cut(s) | 713, 848 |
| SfaNI | GCATC | 2 cut(s) | 635, 899 |
| SfcI | CTRYAG | 1 cut(s) | 494 |
| SinI | GGWCC | 1 cut(s) | 1106 |
| Sse9I | AATT | 7 cut(s) | 639, 672, 783, 791, 805, 855, 1011 |
| SseBI | AGGCCT | 1 cut(s) | 381 |
| SspMI | CTAG | 2 cut(s) | 300, 527 |
| SstI | GAGCTC | 1 cut(s) | 848 |
| StuI | AGGCCT | 1 cut(s) | 381 |
| StyD4I | CCNGG | 7 cut(s) | 113, 218, 595, 1108, 1120, 1207, 1223 |
| TaaI | ACNGT | 3 cut(s) | 32, 1049, 1220 |
| TaqI | TCGA | 2 cut(s) | 39, 261 |
| TasI | AATT | 7 cut(s) | 639, 672, 783, 791, 805, 855, 1011 |
| TatI | WGTACW | 1 cut(s) | 584 |
| TauI | GCSGC | 5 cut(s) | 83, 195, 198, 209, 1247 |
| TfiI | GAWTC | 3 cut(s) | 223, 361, 535 |
| Tru1I | TTAA | 5 cut(s) | 26, 416, 450, 743, 813 |
| Tru9I | TTAA | 5 cut(s) | 26, 416, 450, 743, 813 |
| TscAI | CASTG | 2 cut(s) | 220, 1054 |
| TseFI | GTSAC | 8 cut(s) | 120, 385, 548, 735, 866, 1038, 1172, 1214 |
| TseI | GCWGC | 4 cut(s) | 275, 836, 1086, 1153 |
| Tsp45I | GTSAC | 8 cut(s) | 120, 385, 548, 735, 866, 1038, 1172, 1214 |
| TspDTI | ATGAA | 4 cut(s) | 17, 328, 667, 1175 |
| TspGWI | ACGGA | 1 cut(s) | 434 |
| TspRI | CASTG | 2 cut(s) | 220, 1054 |
| VpaK11BI | GGWCC | 1 cut(s) | 1106 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 269 |
| XapI | RAATTY | 3 cut(s) | 672, 791, 805 |
| XbaI | TCTAGA | 1 cut(s) | 526 |
| XceI | RCATGY | 3 cut(s) | 329, 591, 767 |
| XspI | CTAG | 2 cut(s) | 300, 527 |
| Zsp2I | ATGCAT | 1 cut(s) | 505 |