FvH4_3g32970

General transcription factor IIH

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
28345839 .. 28348676
2838 bp
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UTR
Exon/CDS
Intron
FvH4_3g32970.t1

Sequence Viewer

Length: 1263 bp
ATGAACAACGGCGACCAGAGACGCTTAAACGGTGAAATCGAAGAAGACGAGGAAGACGAGGAGAACAACGACGGCCTCGCCGCTTGGGAACGAGCCTATGCCGACGAGCGTTCCTGGGAGTCACTTCAAGAGGACGAGTCTGGCTTGCTCCGCCCCATTGATAACCAGAGCCTCCATCACGCCCAGTACCGCCGCCGCCTCCGCGCCGCCACCACTGCCCGGATTCAGAAGGGTCTCATTCGTTATCTTTACATCGTTATCGACCTTTCTAAGGCAGCTTCAGAGATGGATTTTAGACCTAGCCGAATGGGTGTGGTTGCGAAGCATGTTGAAGCTTTCATTAGAGAGTATTTCTACCAGAATCCGCTTAGTCAAGTAGGCCTTGTGACTATAAAAGATGGGGTTTCTCATATCTTAACGGATCTCGGTGGGAGTCCTGAGTCTCATGTTAAAGCTCTGATGGGTAAACTGGAATGCTCAGGCGACGCGTCCCTGCAGAATGCATTGGATCTTGTTCAAGGGTATCTAGATCAGATTCCTTCCTATGGTCACAGGGAAGTTCTGATCATGTATTCAGCTCTCAGTACATGTGATCCTGGGGATATAATGGGAACTATTCAGAAGTGCAAGAAATCTAAAATTAGATGCTCAGTTATTGGTCTCTCAGCAGAAATTTTCATATGCAAACATCTGTGCCAAGAAACTGGGGGCTCCTATTATATTGCATTGGATGAGTCACACTTAAAAGACTTGATATTGGAACATGCACCTCCACCTCCAGCAATTGCAGAATTTGCTATTGCGAATTTGATTAAGATGGGGTTTCCACAAAGAGCAGCAGAGAGCTCTGTGGCAATTTGCTCATGTCACAAGGAGGCAAAAGTCGGAGATGGATACACTTGTCCAAGATGCAAAGCCCGCGTGTGTGAGCTACCTACCGAATGTCGCATTTGTGGGTTGACACTCATTTCCTCACCTCATTTGGCAAGGTCTTATCATCATCTGTTCCCAATTGTACCATTTGATGAGGTCTCTATGTCACTATACAGTGATCAGCAAAACAAGTTACCTAAAGCTTGTTTTGGCTGCCAACAAAGTGTTCTTGGTCCAGGAAACAAACCTGGCCTTCGGGTTGCTTGTCCAAAGTGTAAGCAGCACTTTTGCCTTGATTGTGACATATATATTCATGAGAGCTTGCATAACTGCCCAGGCTGTGACAGTACCAGGCATTCAAAGATACCAGCCGCAAATGAAGGAGGATGA

Protein Analysis

421

Amino Acids

46.55

Weight (kDa)

6.02

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 84 - 190 2.3e-10 von Willebrand factor type A domain
Ssl1 PF04056 86 - 276 1.1e-83 Ssl1-like
C1_4 PF07975 360 - 407 1e-18 TFIIH C1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012510)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 204, 488, 921
AclWI GGATC 3 cut(s) 429, 516, 587
AcsI RAATTY 3 cut(s) 672, 791, 805
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 4 cut(s) 188, 586, 1017, 1222
AfiI CCNNNNNNNGG 3 cut(s) 219, 271, 545
AflIII ACRYGT 2 cut(s) 486, 587
AgsI TTSAA 4 cut(s) 128, 332, 518, 1233
AjnI CCWGG 6 cut(s) 113, 595, 1108, 1120, 1207, 1223
AjuI GAANNNNNNNTTGG 2 cut(s) 1083, 1115
AluBI AGCT 8 cut(s) 278, 335, 455, 578, 846, 931, 1076, 1194
AluI AGCT 8 cut(s) 278, 335, 455, 578, 846, 931, 1076, 1194
Alw21I GWGCWC 1 cut(s) 848
Alw26I GTCTC 5 cut(s) 13, 239, 447, 665, 1036
AlwI GGATC 3 cut(s) 429, 516, 587
AoxI GGCC 3 cut(s) 73, 379, 1123
ApeKI GCWGC 4 cut(s) 275, 836, 1086, 1153
ApoI RAATTY 3 cut(s) 672, 791, 805
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 1106
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 44, 966
AvaII GGWCC 1 cut(s) 1106
BaeI ACNNNNGTAYC 2 cut(s) 886, 919
BanII GRGCYC 2 cut(s) 713, 848
BbsI GAAGAC 2 cut(s) 51, 60
Bbv12I GWGCWC 1 cut(s) 848
BbvI GCAGC 4 cut(s) 287, 848, 1073, 1165
BccI CCATC 6 cut(s) 183, 280, 392, 454, 811, 884
BceAI ACGGC 2 cut(s) 25, 88
BciT130I CCWGG 6 cut(s) 115, 597, 1110, 1122, 1209, 1225
BciVI GTATCC 1 cut(s) 887
BclI TGATCA 2 cut(s) 564, 1051
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 5 cut(s) 13, 239, 447, 665, 1036
BfaI CTAG 2 cut(s) 300, 527
BfmI CTRYAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 887
BisI GCNGC 9 cut(s) 81, 193, 196, 207, 276, 837, 1087, 1154, 1245
BlsI GCNGC 9 cut(s) 82, 194, 197, 208, 277, 838, 1088, 1155, 1246
Bme1390I CCNGG 7 cut(s) 115, 220, 597, 1110, 1122, 1209, 1225
Bme18I GGWCC 1 cut(s) 1106
BmgT120I GGNCC 1 cut(s) 1106
BmiI GGNNCC 1 cut(s) 712
BmrFI CCNGG 7 cut(s) 115, 220, 597, 1110, 1122, 1209, 1225
BmrI ACTGGG 2 cut(s) 178, 714
BmsI GCATC 2 cut(s) 635, 899
BmuI ACTGGG 2 cut(s) 178, 714
BpiI GAAGAC 2 cut(s) 51, 60
BpmI CTGGAG 1 cut(s) 762
Bpu10I CCTNAGC 1 cut(s) 478
BpuMI CCSGG 1 cut(s) 220
BsaI GGTCTC 3 cut(s) 239, 665, 1036
BsaJI CCNNGG 3 cut(s) 114, 596, 1207
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 271, 545
Bse1I ACTGG 3 cut(s) 184, 474, 709
BseBI CCWGG 6 cut(s) 115, 597, 1110, 1122, 1209, 1225
BseDI CCNNGG 3 cut(s) 114, 596, 1207
BseGI GGATG 1 cut(s) 736
BseLI CCNNNNNNNGG 3 cut(s) 219, 271, 545
BseMII CTCAG 5 cut(s) 429, 492, 595, 663, 678
BseNI ACTGG 3 cut(s) 184, 474, 709
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 4 cut(s) 287, 848, 1073, 1165
Bsh1236I CGCG 3 cut(s) 204, 488, 921
BshFI GGCC 3 cut(s) 75, 381, 1125
BsiHKAI GWGCWC 1 cut(s) 848
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 219, 271, 545
BsmAI GTCTC 5 cut(s) 13, 239, 447, 665, 1036
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 475
BsmI GAATGC 3 cut(s) 479, 505, 1228
BsnI GGCC 3 cut(s) 75, 381, 1125
Bso31I GGTCTC 3 cut(s) 239, 665, 1036
Bsp1286I GDGCHC 2 cut(s) 713, 848
Bsp143I GATC 6 cut(s) 421, 508, 529, 564, 592, 1051
BspANI GGCC 3 cut(s) 75, 381, 1125
BspCNI CTCAG 5 cut(s) 430, 491, 594, 662, 677
BspFNI CGCG 3 cut(s) 204, 488, 921
BspHI TCATGA 1 cut(s) 1186
BspLI GGNNCC 1 cut(s) 712
BspMAI CTGCAG 1 cut(s) 498
BspPI GGATC 3 cut(s) 429, 516, 587
BspTNI GGTCTC 3 cut(s) 239, 665, 1036
BsrI ACTGG 3 cut(s) 184, 474, 709
BssECI CCNNGG 3 cut(s) 114, 596, 1207
BssMI GATC 6 cut(s) 421, 508, 529, 564, 592, 1051
Bst2UI CCWGG 6 cut(s) 115, 597, 1110, 1122, 1209, 1225
Bst4CI ACNGT 3 cut(s) 32, 1049, 1220
BstAPI GCANNNNNTGC 1 cut(s) 794
BstC8I GCNNGC 3 cut(s) 146, 919, 1196
BstDEI CTNAG 7 cut(s) 270, 368, 438, 478, 581, 649, 664
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 736
BstFNI CGCG 3 cut(s) 204, 488, 921
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 6 cut(s) 424, 511, 532, 567, 595, 1054
BstMAI GTCTC 5 cut(s) 13, 239, 447, 665, 1036
BstMBI GATC 6 cut(s) 421, 508, 529, 564, 592, 1051
BstMWI GCNNNNNNNGC 5 cut(s) 150, 201, 215, 794, 918
BstNI CCWGG 6 cut(s) 115, 597, 1110, 1122, 1209, 1225
BstNSI RCATGY 3 cut(s) 329, 591, 767
BstSCI CCNGG 7 cut(s) 113, 218, 595, 1108, 1120, 1207, 1223
BstSFI CTRYAG 1 cut(s) 494
BstUI CGCG 3 cut(s) 204, 488, 921
BstV1I GCAGC 4 cut(s) 287, 848, 1073, 1165
BstV2I GAAGAC 2 cut(s) 51, 60
BstX2I RGATCY 2 cut(s) 421, 508
BstXI CCANNNNNNTGG 1 cut(s) 704
BstYI RGATCY 2 cut(s) 421, 508
BsuI GTATCC 1 cut(s) 887
BsuRI GGCC 3 cut(s) 75, 381, 1125
BtsCI GGATG 1 cut(s) 736
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 1054
Cac8I GCNNGC 3 cut(s) 146, 919, 1196
CciI TCATGA 1 cut(s) 1186
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 1106
CseI GACGC 3 cut(s) 30, 477, 494
Csp6I GTAC 4 cut(s) 187, 585, 1016, 1221
CviAII CATG 7 cut(s) 326, 446, 568, 588, 764, 864, 1187
CviQI GTAC 4 cut(s) 187, 585, 1016, 1221
DdeI CTNAG 7 cut(s) 270, 368, 438, 478, 581, 649, 664
DpnI GATC 6 cut(s) 423, 510, 531, 566, 594, 1053
DpnII GATC 6 cut(s) 421, 508, 529, 564, 592, 1051
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 846
Eco147I AGGCCT 1 cut(s) 381
Eco24I GRGCYC 2 cut(s) 713, 848
Eco31I GGTCTC 3 cut(s) 239, 665, 1036
Eco47I GGWCC 1 cut(s) 1106
Eco53kI GAGCTC 1 cut(s) 846
Eco57I CTGAAG 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoRII CCWGG 6 cut(s) 113, 595, 1108, 1120, 1207, 1223
EcoT22I ATGCAT 1 cut(s) 505
EcoT38I GRGCYC 2 cut(s) 713, 848
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 7 cut(s) 329, 449, 571, 591, 767, 867, 1190
FalI AAGNNNNNCTT 4 cut(s) 366, 398, 1142, 1174
FaqI GGGAC 1 cut(s) 475
FatI CATG 7 cut(s) 325, 445, 567, 587, 763, 863, 1186
FauI CCCGC 1 cut(s) 926
FauNDI CATATG 1 cut(s) 680
FbaI TGATCA 2 cut(s) 564, 1051
Fnu4HI GCNGC 9 cut(s) 81, 193, 196, 207, 276, 837, 1087, 1154, 1245
FokI GGATG 1 cut(s) 743
FriOI GRGCYC 2 cut(s) 713, 848
Fsp4HI GCNGC 9 cut(s) 81, 193, 196, 207, 276, 837, 1087, 1154, 1245
FspBI CTAG 2 cut(s) 300, 527
GlaI GCGC 1 cut(s) 205
GluI GCNGC 9 cut(s) 81, 193, 196, 207, 276, 837, 1087, 1154, 1245
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 3 cut(s) 75, 381, 1125
HapII CCGG 1 cut(s) 220
HgaI GACGC 3 cut(s) 30, 477, 494
HhaI GCGC 1 cut(s) 206
Hin1II CATG 7 cut(s) 329, 449, 571, 591, 767, 867, 1190
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HincII GTYRAC 1 cut(s) 960
HindII GTYRAC 1 cut(s) 960
HindIII AAGCTT 2 cut(s) 333, 1074
HinfI GANTC 8 cut(s) 119, 137, 223, 361, 433, 440, 535, 734
HpaII CCGG 1 cut(s) 220
HphI GGTGA 2 cut(s) 44, 966
Hpy166II GTNNAC 2 cut(s) 467, 960
Hpy188I TCNGA 7 cut(s) 228, 283, 459, 534, 564, 621, 887
Hpy188III TCNNGA 4 cut(s) 128, 437, 527, 1187
Hpy8I GTNNAC 2 cut(s) 467, 960
Hpy99I CGWCG 3 cut(s) 74, 107, 488
HpyAV CCTTC 4 cut(s) 223, 549, 1136, 1247
HpyCH4III ACNGT 3 cut(s) 32, 1049, 1220
HpyCH4V TGCA 9 cut(s) 496, 503, 627, 684, 725, 767, 788, 912, 1198
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 201, 215, 794, 918
HpyF3I CTNAG 7 cut(s) 270, 368, 438, 478, 581, 649, 664
Hsp92II CATG 7 cut(s) 329, 449, 571, 591, 767, 867, 1190
HspAI GCGC 1 cut(s) 204
Ksp22I TGATCA 2 cut(s) 564, 1051
Kzo9I GATC 6 cut(s) 421, 508, 529, 564, 592, 1051
LmnI GCTCC 2 cut(s) 153, 716
Lsp1109I GCAGC 4 cut(s) 287, 848, 1073, 1165
LweI GCATC 2 cut(s) 635, 899
MaeI CTAG 2 cut(s) 300, 527
MaeIII GTNAC 9 cut(s) 120, 385, 548, 735, 866, 1038, 1065, 1172, 1214
MalI GATC 6 cut(s) 423, 510, 531, 566, 594, 1053
MboI GATC 6 cut(s) 421, 508, 529, 564, 592, 1051
MboII GAAGA 3 cut(s) 53, 56, 65
MfeI CAATTG 2 cut(s) 783, 1011
MflI RGATCY 2 cut(s) 421, 508
MhlI GDGCHC 2 cut(s) 713, 848
MluCI AATT 7 cut(s) 639, 672, 783, 791, 805, 855, 1011
MluI ACGCGT 1 cut(s) 486
MlyI GAGTC 5 cut(s) 128, 146, 442, 449, 743
MmeI TCCRAC 1 cut(s) 865
Mph1103I ATGCAT 1 cut(s) 505
MseI TTAA 5 cut(s) 26, 416, 450, 743, 813
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 7 cut(s) 115, 220, 597, 1110, 1122, 1209, 1225
MunI CAATTG 2 cut(s) 783, 1011
Mva1269I GAATGC 3 cut(s) 479, 505, 1228
MvaI CCWGG 6 cut(s) 115, 597, 1110, 1122, 1209, 1225
MvnI CGCG 3 cut(s) 204, 488, 921
MwoI GCNNNNNNNGC 5 cut(s) 150, 201, 215, 794, 918
NciI CCSGG 1 cut(s) 220
NdeI CATATG 1 cut(s) 680
NdeII GATC 6 cut(s) 421, 508, 529, 564, 592, 1051
NlaIII CATG 7 cut(s) 329, 449, 571, 591, 767, 867, 1190
NlaIV GGNNCC 1 cut(s) 712
NmuCI GTSAC 8 cut(s) 120, 385, 548, 735, 866, 1038, 1172, 1214
NsiI ATGCAT 1 cut(s) 505
NspI RCATGY 3 cut(s) 329, 591, 767
PagI TCATGA 1 cut(s) 1186
PceI AGGCCT 1 cut(s) 381
PciI ACATGT 1 cut(s) 587
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 45, 54
PctI GAATGC 3 cut(s) 479, 505, 1228
PfeI GAWTC 3 cut(s) 223, 361, 535
PfoI TCCNGGA 1 cut(s) 1108
PkrI GCNGC 9 cut(s) 82, 194, 197, 208, 277, 838, 1088, 1155, 1246
PleI GAGTC 5 cut(s) 127, 145, 441, 448, 742
PpsI GAGTC 5 cut(s) 127, 145, 441, 448, 742
PscI ACATGT 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 848
Psp6I CCWGG 6 cut(s) 113, 595, 1108, 1120, 1207, 1223
PspGI CCWGG 6 cut(s) 113, 595, 1108, 1120, 1207, 1223
PspN4I GGNNCC 1 cut(s) 712
PspPI GGNCC 1 cut(s) 1106
PstI CTGCAG 1 cut(s) 498
PsuI RGATCY 2 cut(s) 421, 508
RsaI GTAC 4 cut(s) 188, 586, 1017, 1222
RsaNI GTAC 4 cut(s) 187, 585, 1016, 1221
SacI GAGCTC 1 cut(s) 848
SaqAI TTAA 5 cut(s) 26, 416, 450, 743, 813
SatI GCNGC 9 cut(s) 81, 193, 196, 207, 276, 837, 1087, 1154, 1245
Sau3AI GATC 6 cut(s) 421, 508, 529, 564, 592, 1051
Sau96I GGNCC 1 cut(s) 1106
SchI GAGTC 5 cut(s) 128, 146, 442, 449, 743
ScrFI CCNGG 7 cut(s) 115, 220, 597, 1110, 1122, 1209, 1225
SduI GDGCHC 2 cut(s) 713, 848
SfaNI GCATC 2 cut(s) 635, 899
SfcI CTRYAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 1106
Sse9I AATT 7 cut(s) 639, 672, 783, 791, 805, 855, 1011
SseBI AGGCCT 1 cut(s) 381
SspMI CTAG 2 cut(s) 300, 527
SstI GAGCTC 1 cut(s) 848
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 7 cut(s) 113, 218, 595, 1108, 1120, 1207, 1223
TaaI ACNGT 3 cut(s) 32, 1049, 1220
TaqI TCGA 2 cut(s) 39, 261
TasI AATT 7 cut(s) 639, 672, 783, 791, 805, 855, 1011
TatI WGTACW 1 cut(s) 584
TauI GCSGC 5 cut(s) 83, 195, 198, 209, 1247
TfiI GAWTC 3 cut(s) 223, 361, 535
Tru1I TTAA 5 cut(s) 26, 416, 450, 743, 813
Tru9I TTAA 5 cut(s) 26, 416, 450, 743, 813
TscAI CASTG 2 cut(s) 220, 1054
TseFI GTSAC 8 cut(s) 120, 385, 548, 735, 866, 1038, 1172, 1214
TseI GCWGC 4 cut(s) 275, 836, 1086, 1153
Tsp45I GTSAC 8 cut(s) 120, 385, 548, 735, 866, 1038, 1172, 1214
TspDTI ATGAA 4 cut(s) 17, 328, 667, 1175
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 2 cut(s) 220, 1054
VpaK11BI GGWCC 1 cut(s) 1106
XagI CCTNNNNNAGG 1 cut(s) 269
XapI RAATTY 3 cut(s) 672, 791, 805
XbaI TCTAGA 1 cut(s) 526
XceI RCATGY 3 cut(s) 329, 591, 767
XspI CTAG 2 cut(s) 300, 527
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.