Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012510

Physical Location & Seq

Genomic Coordinates Reverse (-)

39585943 .. 39587269

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0328500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCAGTCTTACATTGGGGTGTTGGCACGTACGAAGATCCCTATCTCAATAAATGATTGGAGAGAAGTGGATCTAGATGAAAAGGAAAAGATATGGGAATCTATAAAGGATGCATTTGTGGTGCCTAAAGAGCTTAAAAAAATGGTGATTTCATCTGCTGCAACTAAATGGAGAGAGTTCAAGAGCAAGTTAACAAACGTGTACATCATCCCTTATATGGATGAACCAGAACTGTTAGAAAATCCTCCAGATGATTACCGAAGCATAACGAAGGATACTTGGCACCAGTTTGTTGCTGATAGGCTTTCAGCTACCTTCCAGGAAATACGTGAAGCCCAAATTGCAAAGCGAAAGGAGAATAAATATCCTCATCGTTTGTCACGCAAAGGTTATGCAAATTTAATGGAAGAACTGTCTGAAAGTGTCCCTTTAGAAGAACTTGATAGAGCTACAATGTGGATCAAGGCTCGGCAAGATAGGAATGGCAACTTCAAACAACCTGAGGTAGAGAAGAAAGCCGAAAAAATTGAACATTTAAGGAAAAGGGAGGCTGAAGGGGAAATTGCCACATCTGGGTCTGATGATGTGCTCACTCTTGCATTGGGGAATCCGGAGCATAGAGGTAGGGTTAGAGGTGTTGGTGGCAATGTCAAGCCCGATTTATATTTCAACTTGCCAAAACGCCAAAAGATGACTTTTGAACAGAGGACTAGGTTATCGCTAAAGAAGATACTAGAGGAGGAGAAGGAAGTTTTGTTAGCTAAGGAAAGAACTGCATGGGAGGAGGAGAGGGATAGAAAACATGCTGAGGAGAGAGCTGAGGAGAGAGCTTATTGGACTGAGAGGATTGCGAAGCTAGAAGCGAAGGTCAATGGGAAGGAGCTGCCTGTTGAGTCCCCCAAACCTGTCACAGCAGTTAATGAGCTTTGTCACGCCCCGAATTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

C1_4 Ssl1

Protein Analysis

316

Amino Acids

36.98

Weight (kDa)

7.06

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	91 - 218	3.5e-12	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05055
fragaria_vesca	FvH4_3g32970
malus_domestica	MD03G1112800.v1.1 MD11G1132000.v1.1
prunus_persica	Prupe.6G097100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060301
rosa_laevigata	RLG00000035300 RLG00000035353
rosa_multiflora	Rmu_co8508299.1_g000001 Rmu_sc0003366.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020480
rosa_rugosa	Rorug05G0328500
rosa_samantha	Rh5AG392700 Rh5AG393200 Rh5BG405800 Rh5CG429300 Rh5CG429700 Rh5DG420800
rosa_wichuraiana	Rw5G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	121, 282
AccIII	TCCGGA	1 cut(s)	610
AclWI	GGATC	3 cut(s)	31, 78, 467
AcsI	RAATTY	2 cut(s)	397, 940
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	2 cut(s)	31, 203
AfiI	CCNNNNNNNGG	2 cut(s)	217, 573
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	6 cut(s)	181, 493, 530, 670, 701, 947
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	9 cut(s)	133, 311, 449, 761, 818, 830, 856, 883, 925
AluI	AGCT	9 cut(s)	133, 311, 449, 761, 818, 830, 856, 883, 925
Alw21I	GWGCWC	1 cut(s)	591
AlwI	GGATC	3 cut(s)	31, 78, 467
Aor13HI	TCCGGA	1 cut(s)	610
ApeKI	GCWGC	2 cut(s)	158, 883
ApoI	RAATTY	2 cut(s)	397, 940
AsuHPI	GGTGA	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	501
BanI	GGYRCC	2 cut(s)	121, 282
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	2 cut(s)	807, 819
BbvI	GCAGC	2 cut(s)	145, 870
BciT130I	CCWGG	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	268
BfaI	CTAG	4 cut(s)	74, 711, 734, 857
BfuI	GTATCC	1 cut(s)	268
BisI	GCNGC	2 cut(s)	159, 884
BlsI	GCNGC	2 cut(s)	160, 885
Bme1390I	CCNGG	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	123, 284
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	3 cut(s)	762, 807, 819
BsaAI	YACGTR	2 cut(s)	29, 329
BsaBI	GATNNNNATC	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 573
Bse1I	ACTGG	1 cut(s)	286
Bse21I	CCTNAGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	652
Bse8I	GATNNNNATC	1 cut(s)	41
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	320
BseGI	GGATG	3 cut(s)	115, 207, 226
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	217, 573
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	4 cut(s)	492, 798, 810, 831
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	6 cut(s)	752, 755, 797, 800, 824, 836
BseXI	GCAGC	2 cut(s)	145, 870
BshNI	GGYRCC	2 cut(s)	121, 282
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	611
BsiWI	CGTACG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	410, 880
BslI	CCNNNNNNNGG	2 cut(s)	217, 573
BsmFI	GGGAC	2 cut(s)	410, 880
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp13I	TCCGGA	1 cut(s)	610
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	36, 70, 459
BspCNI	CTCAG	4 cut(s)	493, 799, 811, 832
BspEI	TCCGGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	123, 284
BspPI	GGATC	3 cut(s)	31, 78, 467
BspT107I	GGYRCC	2 cut(s)	121, 282
BsrDI	GCAATG	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	3 cut(s)	36, 70, 459
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	234, 414
BstAUI	TGTACA	1 cut(s)	201
BstBAI	YACGTR	2 cut(s)	29, 329
BstDEI	CTNAG	5 cut(s)	501, 762, 807, 819, 840
BstF5I	GGATG	3 cut(s)	115, 207, 226
BstKTI	GATC	3 cut(s)	39, 73, 462
BstMBI	GATC	3 cut(s)	36, 70, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 341
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	806
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	145, 870
BstX2I	RGATCY	2 cut(s)	36, 70
BstYI	RGATCY	2 cut(s)	36, 70
Bsu36I	CCTNAGG	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	268
BtsCI	GGATG	3 cut(s)	115, 207, 226
Csp6I	GTAC	2 cut(s)	30, 202
CviAII	CATG	2 cut(s)	777, 803
CviQI	GTAC	2 cut(s)	30, 202
DdeI	CTNAG	5 cut(s)	501, 762, 807, 819, 840
DpnI	GATC	3 cut(s)	38, 72, 461
DpnII	GATC	3 cut(s)	36, 70, 459
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	115
FaeI	CATG	2 cut(s)	780, 806
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FaqI	GGGAC	2 cut(s)	410, 880
FatI	CATG	2 cut(s)	776, 802
Fnu4HI	GCNGC	2 cut(s)	159, 884
FokI	GGATG	3 cut(s)	122, 194, 233
Fsp4HI	GCNGC	2 cut(s)	159, 884
FspBI	CTAG	4 cut(s)	74, 711, 734, 857
GluI	GCNGC	2 cut(s)	159, 884
GsuI	CTGGAG	1 cut(s)	231
HapII	CCGG	1 cut(s)	611
Hin1II	CATG	2 cut(s)	780, 806
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	3 cut(s)	98, 607, 893
HpaI	GTTAAC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	192, 202
Hpy188I	TCNGA	2 cut(s)	418, 580
Hpy188III	TCNNGA	4 cut(s)	74, 181, 248, 611
Hpy8I	GTNNAC	2 cut(s)	192, 202
HpyAV	CCTTC	6 cut(s)	265, 325, 548, 739, 859, 871
HpyCH4III	ACNGT	2 cut(s)	234, 414
HpyCH4IV	ACGT	3 cut(s)	28, 198, 328
HpyCH4V	TGCA	7 cut(s)	4, 113, 161, 344, 395, 599, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 341
HpyF3I	CTNAG	5 cut(s)	501, 762, 807, 819, 840
HpySE526I	ACGT	3 cut(s)	28, 198, 328
Hsp92II	CATG	2 cut(s)	780, 806
Kpn2I	TCCGGA	1 cut(s)	610
KspAI	GTTAAC	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	36, 70, 459
LmnI	GCTCC	2 cut(s)	613, 880
Lsp1109I	GCAGC	2 cut(s)	145, 870
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	4 cut(s)	74, 711, 734, 857
MaeII	ACGT	3 cut(s)	28, 198, 328
MaeIII	GTNAC	3 cut(s)	378, 907, 929
MalI	GATC	3 cut(s)	38, 72, 461
MboI	GATC	3 cut(s)	36, 70, 459
MboII	GAAGA	5 cut(s)	46, 419, 446, 523, 739
MflI	RGATCY	2 cut(s)	36, 70
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	5 cut(s)	339, 397, 525, 561, 940
MlyI	GAGTC	1 cut(s)	902
Mph1103I	ATGCAT	1 cut(s)	115
MroI	TCCGGA	1 cut(s)	610
MseI	TTAA	5 cut(s)	135, 191, 401, 536, 918
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	130, 341
NdeII	GATC	3 cut(s)	36, 70, 459
NlaIII	CATG	2 cut(s)	780, 806
NlaIV	GGNNCC	2 cut(s)	123, 284
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	3 cut(s)	378, 907, 929
NsiI	ATGCAT	1 cut(s)	115
NspI	RCATGY	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	98, 607
Pfl23II	CGTACG	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	2 cut(s)	160, 885
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
Ppu21I	YACGTR	2 cut(s)	29, 329
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspLI	CGTACG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	123, 284
PsuI	RGATCY	2 cut(s)	36, 70
RsaI	GTAC	2 cut(s)	31, 203
RsaNI	GTAC	2 cut(s)	30, 202
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	5 cut(s)	135, 191, 401, 536, 918
SatI	GCNGC	2 cut(s)	159, 884
Sau3AI	GATC	3 cut(s)	36, 70, 459
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	5 cut(s)	339, 397, 525, 561, 940
SspMI	CTAG	4 cut(s)	74, 711, 734, 857
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	234, 414
TaiI	ACGT	3 cut(s)	31, 201, 331
TasI	AATT	5 cut(s)	339, 397, 525, 561, 940
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	98, 607
Tru1I	TTAA	5 cut(s)	135, 191, 401, 536, 918
Tru9I	TTAA	5 cut(s)	135, 191, 401, 536, 918
TseFI	GTSAC	3 cut(s)	378, 907, 929
TseI	GCWGC	2 cut(s)	158, 883
Tsp45I	GTSAC	3 cut(s)	378, 907, 929
TspDTI	ATGAA	3 cut(s)	93, 141, 237
XapI	RAATTY	2 cut(s)	397, 940
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	806
XspI	CTAG	4 cut(s)	74, 711, 734, 857
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.