Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012510

Physical Location & Seq

Genomic Coordinates Reverse (-)

64532086 .. 64533338

Gene Structure 1253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACTCACGCTAACAACGCTGACGAGCGCTCCTGGGAGTCACTGCAAGAGGACGAGTCTGGCCTTCTTCGGTCCATTGACAACCAGAGCCTCCACCACGCCCAGTACCGTCACCGCTTCCGCGCCGCCAGCACCACTCGGATACAAAAGGGTCTCATTCGCTATCTTTATATTGTTATCGACCTCTCTAAGGCAGCTTCAAAAATGGATTTTCGTCCTAGTCGAATGGGTGTGGTTGCAAAGCATGTTAAGGCTTTCATTAGAGGGCATTTCTACCAGAATCCGCTCAGTCAAGTAGGCCTTGTGACTATAAAAGATGGGGTGGCTCATATCTTAACAGATCTCGGTGGGAGTCCCGAGTCTCATGTTAAAGCTCTGATGGGTAAACTGGAATGCTCAGGTGATGCGTCCCTGCAGAATGCTCTGGATCTTGTTCAAGGGTATCTAAATCAGATTCCATCCTGTGGTCACAGGGAAGTTCTGATCATGTATTCAGCACTCAGTACCTGTGATCCAGGTGATATAATGGAAACTATTCAGAAACCTGTTGAAGTTCATCAACATATAAAGATGCATCTTTCCAAACCCTGGAGACATGAAAAGAAAAAGAAAAACATAAGAACTGAAACCAAGAAGGAATTGGGGAAAACCAAGTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

C1_4 Ssl1

Protein Analysis

221

Amino Acids

24.92

Weight (kDa)

9.47

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VWA_2	PF13519	57 - 162	1.3e-10	von Willebrand factor type A domain
Ssl1	PF04056	59 - 184	6.2e-48	Ssl1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05055
fragaria_vesca	FvH4_3g32970
malus_domestica	MD03G1112800.v1.1 MD11G1132000.v1.1
prunus_persica	Prupe.6G097100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060301
rosa_laevigata	RLG00000035300 RLG00000035353
rosa_multiflora	Rmu_co8508299.1_g000001 Rmu_sc0003366.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020480
rosa_rugosa	Rorug05G0328500
rosa_samantha	Rh5AG392700 Rh5AG393200 Rh5BG405800 Rh5CG429300 Rh5CG429700 Rh5DG420800
rosa_wichuraiana	Rw5G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	464, 588
AccBSI	CCGCTC	1 cut(s)	286
AccII	CGCG	1 cut(s)	123
AciI	CCGC	4 cut(s)	115, 121, 126, 284
AclWI	GGATC	2 cut(s)	435, 506
AfaI	GTAC	2 cut(s)	107, 505
AfeI	AGCGCT	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	190, 464, 588
AgsI	TTSAA	4 cut(s)	201, 437, 551, 658
AjnI	CCWGG	3 cut(s)	32, 514, 587
AluBI	AGCT	2 cut(s)	197, 374
AluI	AGCT	2 cut(s)	197, 374
Alw26I	GTCTC	3 cut(s)	158, 366, 586
AlwI	GGATC	2 cut(s)	435, 506
AlwNI	CAGNNNCTG	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	356
Aor51HI	AGCGCT	1 cut(s)	29
AoxI	GGCC	2 cut(s)	61, 298
ApeKI	GCWGC	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	30, 125
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	104, 413, 530
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	311, 373, 466
BciT130I	CCWGG	3 cut(s)	34, 516, 589
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	3 cut(s)	158, 366, 586
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	135
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	2 cut(s)	126, 195
BlsI	GCNGC	2 cut(s)	127, 196
Bme1390I	CCNGG	3 cut(s)	34, 516, 589
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	72
BmrFI	CCNGG	3 cut(s)	34, 516, 589
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	3 cut(s)	394, 561, 583
BmuI	ACTGGG	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	610
Bpu10I	CCTNAGC	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	33, 587
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 464, 588
Bse1I	ACTGG	2 cut(s)	103, 393
BseBI	CCWGG	3 cut(s)	34, 516, 589
BseDI	CCNNGG	2 cut(s)	33, 587
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	3 cut(s)	190, 464, 588
BseMII	CTCAG	3 cut(s)	301, 411, 514
BseNI	ACTGG	2 cut(s)	103, 393
BseXI	GCAGC	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	63, 300
BsiHKCI	CYCGRG	1 cut(s)	356
BslFI	GGGAC	2 cut(s)	339, 394
BslI	CCNNNNNNNGG	3 cut(s)	190, 464, 588
BsmAI	GTCTC	3 cut(s)	158, 366, 586
BsmFI	GGGAC	2 cut(s)	339, 394
BsmI	GAATGC	2 cut(s)	398, 424
BsnI	GGCC	2 cut(s)	63, 300
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	340, 427, 483, 511
BspACI	CCGC	4 cut(s)	115, 121, 126, 284
BspANI	GGCC	2 cut(s)	63, 300
BspCNI	CTCAG	3 cut(s)	300, 410, 513
BspFNI	CGCG	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	417
BspPI	GGATC	2 cut(s)	435, 506
BspTNI	GGTCTC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	103, 393
BssECI	CCNNGG	2 cut(s)	33, 587
BssMI	GATC	4 cut(s)	340, 427, 483, 511
Bst2UI	CCWGG	3 cut(s)	34, 516, 589
Bst4CI	ACNGT	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	189, 287, 397, 500
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	458
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	2 cut(s)	30, 125
BstKTI	GATC	4 cut(s)	343, 430, 486, 514
BstMAI	GTCTC	3 cut(s)	158, 366, 586
BstMBI	GATC	4 cut(s)	340, 427, 483, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 129
BstNI	CCWGG	3 cut(s)	34, 516, 589
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	32, 514, 587
BstSFI	CTRYAG	1 cut(s)	413
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	340, 427
BstYI	RGATCY	2 cut(s)	340, 427
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	63, 300
BtsCI	GGATG	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	507
CfoI	GCGC	2 cut(s)	30, 125
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	106, 504
CviAII	CATG	4 cut(s)	245, 365, 487, 596
CviJI	RGCY	7 cut(s)	63, 90, 197, 254, 300, 326, 374
CviKI_1	RGCY	7 cut(s)	63, 90, 197, 254, 300, 326, 374
CviQI	GTAC	2 cut(s)	106, 504
DdeI	CTNAG	4 cut(s)	189, 287, 397, 500
DpnI	GATC	4 cut(s)	342, 429, 485, 513
DpnII	GATC	4 cut(s)	340, 427, 483, 511
Eco147I	AGGCCT	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	72
Eco47III	AGCGCT	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRII	CCWGG	3 cut(s)	32, 514, 587
EcoT22I	ATGCAT	1 cut(s)	576
FaeI	CATG	4 cut(s)	248, 368, 490, 599
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	2 cut(s)	339, 394
FatI	CATG	4 cut(s)	244, 364, 486, 595
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	126, 195
FokI	GGATG	1 cut(s)	445
Fsp4HI	GCNGC	2 cut(s)	126, 195
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	2 cut(s)	29, 124
GluI	GCNGC	2 cut(s)	126, 195
GsuI	CTGGAG	1 cut(s)	610
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	63, 300
HgaI	GACGC	1 cut(s)	396
HhaI	GCGC	2 cut(s)	30, 125
Hin1II	CATG	4 cut(s)	248, 368, 490, 599
Hin6I	GCGC	2 cut(s)	28, 123
HinP1I	GCGC	2 cut(s)	28, 123
HinfI	GANTC	7 cut(s)	4, 38, 56, 280, 352, 359, 454
HphI	GGTGA	3 cut(s)	104, 413, 530
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	5 cut(s)	141, 378, 453, 483, 540
Hpy188III	TCNNGA	2 cut(s)	356, 425
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	74, 628
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	46, 239, 415, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 129
HpyF3I	CTNAG	4 cut(s)	189, 287, 397, 500
Hsp92II	CATG	4 cut(s)	248, 368, 490, 599
HspAI	GCGC	2 cut(s)	28, 123
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	4 cut(s)	340, 427, 483, 511
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	3 cut(s)	394, 561, 583
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	39, 110, 304, 467
MalI	GATC	4 cut(s)	342, 429, 485, 513
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	4 cut(s)	340, 427, 483, 511
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	2 cut(s)	340, 427
MluCI	AATT	2 cut(s)	638, 658
MlyI	GAGTC	4 cut(s)	47, 65, 361, 368
MnlI	CCTC	4 cut(s)	43, 101, 194, 257
Mph1103I	ATGCAT	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	4 cut(s)	249, 335, 369, 661
MspR9I	CCNGG	3 cut(s)	34, 516, 589
Mva1269I	GAATGC	2 cut(s)	398, 424
MvaI	CCWGG	3 cut(s)	34, 516, 589
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	17, 129
NdeII	GATC	4 cut(s)	340, 427, 483, 511
NlaIII	CATG	4 cut(s)	248, 368, 490, 599
NmuCI	GTSAC	4 cut(s)	39, 110, 304, 467
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	2 cut(s)	398, 424
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	280, 454
PflMI	CCANNNNNTGG	2 cut(s)	464, 588
PkrI	GCNGC	2 cut(s)	127, 196
PleI	GAGTC	4 cut(s)	46, 64, 360, 367
PpsI	GAGTC	4 cut(s)	46, 64, 360, 367
Psp6I	CCWGG	3 cut(s)	32, 514, 587
PspGI	CCWGG	3 cut(s)	32, 514, 587
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	417
PstNI	CAGNNNCTG	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	340, 427
RsaI	GTAC	2 cut(s)	107, 505
RsaNI	GTAC	2 cut(s)	106, 504
SaqAI	TTAA	4 cut(s)	249, 335, 369, 661
SatI	GCNGC	2 cut(s)	126, 195
Sau3AI	GATC	4 cut(s)	340, 427, 483, 511
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	4 cut(s)	47, 65, 361, 368
ScrFI	CCNGG	3 cut(s)	34, 516, 589
SetI	ASST	7 cut(s)	186, 199, 376, 403, 509, 520, 547
SfaNI	GCATC	3 cut(s)	394, 561, 583
SfcI	CTRYAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	2 cut(s)	638, 658
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	4 cut(s)	115, 121, 126, 284
SspMI	CTAG	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	3 cut(s)	32, 514, 587
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	2 cut(s)	180, 223
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	638, 658
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	280, 454
Tru1I	TTAA	4 cut(s)	249, 335, 369, 661
Tru9I	TTAA	4 cut(s)	249, 335, 369, 661
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	4 cut(s)	39, 110, 304, 467
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	4 cut(s)	39, 110, 304, 467
TspDTI	ATGAA	3 cut(s)	247, 545, 612
TspRI	CASTG	1 cut(s)	48
Van91I	CCANNNNNTGG	2 cut(s)	464, 588
VpaK11BI	GGWCC	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	188
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.