Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012510

Physical Location & Seq

Genomic Coordinates Reverse (-)

11941502 .. 11953006

Gene Structure 11505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1132000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCAACATAGAATAACATTAGCTTGGGCAGCCAAGGAGTTTGGTTTACATCATCTTCTGTCAATGATGAAAATGTTAAAGCAGCTGCGGAAATGGATTTTCGACCAAGCAGAACGGGGGGTAGTTGCAAAACATGTTGAGGCCTTCATAAGAGAGTTTTTCTACCAGAATCCGTTTAGTCAAGTTGGCCTGGTGACTGTAAAAGATGGTGTTGCTCATTGTTTAACGGATCTTGGTGGCAGCCCCCAGTCTCATGTTAAAGCGTTGATGGGTAAACTGGAATGCTCTGGTGACTCGTCCCTGCAGAATGCATTGGATCTTGTACATGGGTATCTGAATCAGATTCCATCGTATGGTCATAGAGAAATGCTGATCTTATATTCAGCTCTCAGTACCTGTGATCCAGGAGATATACTGGAAACTATCCAGAAGTGTAAGAAATCAAAAATTAGGTGCTCAGTCATTGGTCTCTCGGCAGAAAATTCCATATGCAAGAATCTATGCCAAGAAACCGGTGGCTTATACTATATTCCTTTGGATGAGCCGCACTTAAAAGAGTTAATATTGGAACATGCGCCTCCTCCTCCTACAATAGTATTGAATTTTGTGAATGAATTTGCAATTGCTAATTTGATAAAGATAGGGTTCCCACAAAGAGCGGCAGAGGGCTCTGTGGCCATCTGTTCATGTCACAAGGAGGCAAAGGTAGGAGCTGGATACACTTGTCCTAGGTGCAAGGCTCGCGTATGTGAGCTACCTACGGAATGTCGCATTTGTGGGTTGACACTCATTTCATCCCCTCATTTGGCAAGGTCTTATCATCATCTCTTTCCCATTGTACCTTTTTACGAGATGTACCTCTCACTACTAATTGATCAACAAAACAAGTTTCCTAGATCTTGTTTCGGCTGCCAACAAAGTCTTCTCAATCCCGGAAACAAGCCCGGTCTTCGGGTCGCTTGCCCAAAATGCAAACAACACTTCTGCCTTGAATGCGACATGTATATTCATGAAAGCTTGCATAACTGCCCTGGTTGTGAGAGCACTAGGCACTCCAAGATCCCGAATATAAACGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

C1_4 Ssl1

Protein Analysis

361

Amino Acids

40.21

Weight (kDa)

8.28

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssl1	PF04056	40 - 217	7.7e-71	Ssl1-like
VWA_2	PF13519	45 - 126	6.1e-07	von Willebrand factor type A domain
C1_4	PF07975	300 - 348	3.3e-18	TFIIH C1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05055
fragaria_vesca	FvH4_3g32970
malus_domestica	MD03G1112800.v1.1 MD11G1132000.v1.1
prunus_persica	Prupe.6G097100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060301
rosa_laevigata	RLG00000035300 RLG00000035353
rosa_multiflora	Rmu_co8508299.1_g000001 Rmu_sc0003366.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020480
rosa_rugosa	Rorug05G0328500
rosa_samantha	Rh5AG392700 Rh5AG393200 Rh5BG405800 Rh5CG429300 Rh5CG429700 Rh5DG420800
rosa_wichuraiana	Rw5G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	659
AccII	CGCG	1 cut(s)	744
AciI	CCGC	3 cut(s)	88, 545, 659
AclWI	GGATC	4 cut(s)	237, 324, 395, 1054
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	3 cut(s)	481, 601, 614
AfaI	GTAC	4 cut(s)	324, 394, 840, 857
AfiI	CCNNNNNNNGG	3 cut(s)	353, 805, 951
AflIII	ACRYGT	2 cut(s)	133, 999
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	2 cut(s)	601, 992
AjnI	CCWGG	3 cut(s)	189, 403, 1030
AjuI	GAANNNNNNNTTGG	2 cut(s)	906, 938
AluBI	AGCT	6 cut(s)	23, 85, 386, 713, 754, 1017
AluI	AGCT	6 cut(s)	23, 85, 386, 713, 754, 1017
Alw21I	GWGCWC	2 cut(s)	458, 1046
Alw26I	GTCTC	2 cut(s)	255, 473
AlwI	GGATC	4 cut(s)	237, 324, 395, 1054
AlwNI	CAGNNNCTG	1 cut(s)	396
AoxI	GGCC	3 cut(s)	141, 187, 675
ApeKI	GCWGC	5 cut(s)	29, 82, 85, 240, 909
ApoI	RAATTY	3 cut(s)	481, 601, 614
AsiGI	ACCGGT	1 cut(s)	512
AspA2I	CCTAGG	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	577
AsuC2I	CCSGG	2 cut(s)	933, 945
AsuHPI	GGTGA	2 cut(s)	205, 302
AvrII	CCTAGG	1 cut(s)	728
BaeI	ACNNNNGTAYC	4 cut(s)	314, 347, 709, 742
BalI	TGGCCA	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	671
BbsI	GAAGAC	2 cut(s)	914, 941
Bbv12I	GWGCWC	2 cut(s)	458, 1046
BbvI	GCAGC	5 cut(s)	41, 72, 94, 252, 896
BccI	CCATC	4 cut(s)	200, 262, 355, 686
BciT130I	CCWGG	3 cut(s)	191, 405, 1032
BciVI	GTATCC	1 cut(s)	710
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	2 cut(s)	933, 945
BcoDI	GTCTC	2 cut(s)	255, 473
BfaI	CTAG	3 cut(s)	729, 894, 1047
BfmI	CTRYAG	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	710
BglII	AGATCT	1 cut(s)	896
BisI	GCNGC	7 cut(s)	30, 83, 86, 241, 545, 660, 910
BlnI	CCTAGG	1 cut(s)	728
BlsI	GCNGC	7 cut(s)	31, 84, 87, 242, 546, 661, 911
Bme1390I	CCNGG	5 cut(s)	191, 405, 933, 945, 1032
BmiI	GGNNCC	1 cut(s)	647
BmrFI	CCNGG	5 cut(s)	191, 405, 933, 945, 1032
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	2 cut(s)	914, 941
BpuMI	CCSGG	2 cut(s)	933, 945
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	33, 728, 1030
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 805, 951
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	3 cut(s)	247, 282, 420
BseBI	CCWGG	3 cut(s)	191, 405, 1032
BseDI	CCNNGG	3 cut(s)	33, 728, 1030
BseGI	GGATG	2 cut(s)	544, 794
BseLI	CCNNNNNNNGG	3 cut(s)	353, 805, 951
BseMII	CTCAG	2 cut(s)	403, 471
BseNI	ACTGG	3 cut(s)	247, 282, 420
BseRI	GAGGAG	2 cut(s)	570, 573
BseXI	GCAGC	5 cut(s)	41, 72, 94, 252, 896
Bsh1236I	CGCG	1 cut(s)	744
BshFI	GGCC	3 cut(s)	143, 189, 677
BshTI	ACCGGT	1 cut(s)	512
BsiHKAI	GWGCWC	2 cut(s)	458, 1046
BsiSI	CCGG	3 cut(s)	513, 933, 945
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	353, 805, 951
BsmAI	GTCTC	2 cut(s)	255, 473
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	3 cut(s)	287, 313, 998
BsnI	GGCC	3 cut(s)	143, 189, 677
Bso31I	GGTCTC	1 cut(s)	473
Bsp1286I	GDGCHC	3 cut(s)	458, 671, 1046
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	7 cut(s)	229, 316, 372, 400, 874, 896, 1059
BspACI	CCGC	3 cut(s)	88, 545, 659
BspANI	GGCC	3 cut(s)	143, 189, 677
BspCNI	CTCAG	2 cut(s)	402, 470
BspFNI	CGCG	1 cut(s)	744
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	1 cut(s)	647
BspMAI	CTGCAG	1 cut(s)	306
BspPI	GGATC	4 cut(s)	237, 324, 395, 1054
BspTNI	GGTCTC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	3 cut(s)	247, 282, 420
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	3 cut(s)	33, 728, 1030
BssMI	GATC	7 cut(s)	229, 316, 372, 400, 874, 896, 1059
BssT1I	CCWWGG	2 cut(s)	33, 728
Bst2UI	CCWGG	3 cut(s)	191, 405, 1032
Bst4CI	ACNGT	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	3 cut(s)	742, 961, 1019
BstDEI	CTNAG	2 cut(s)	389, 457
BstF5I	GGATG	2 cut(s)	544, 794
BstFNI	CGCG	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	7 cut(s)	232, 319, 375, 403, 877, 899, 1062
BstMAI	GTCTC	2 cut(s)	255, 473
BstMBI	GATC	7 cut(s)	229, 316, 372, 400, 874, 896, 1059
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 741, 969, 993
BstNI	CCWGG	3 cut(s)	191, 405, 1032
BstNSI	RCATGY	3 cut(s)	137, 575, 1003
BstSCI	CCNGG	5 cut(s)	189, 403, 931, 943, 1030
BstSFI	CTRYAG	1 cut(s)	302
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	5 cut(s)	41, 72, 94, 252, 896
BstV2I	GAAGAC	2 cut(s)	914, 941
BstX2I	RGATCY	4 cut(s)	229, 316, 896, 1059
BstYI	RGATCY	4 cut(s)	229, 316, 896, 1059
BsuI	GTATCC	1 cut(s)	710
BsuRI	GGCC	3 cut(s)	143, 189, 677
BtsCI	GGATG	2 cut(s)	544, 794
Cac8I	GCNNGC	3 cut(s)	742, 961, 1019
CaiI	CAGNNNCTG	1 cut(s)	396
CciI	TCATGA	1 cut(s)	1009
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	512
Csp6I	GTAC	4 cut(s)	323, 393, 839, 856
CspAI	ACCGGT	1 cut(s)	512
CviAII	CATG	7 cut(s)	134, 254, 326, 572, 687, 1000, 1010
CviQI	GTAC	4 cut(s)	323, 393, 839, 856
DdeI	CTNAG	2 cut(s)	389, 457
DpnI	GATC	7 cut(s)	231, 318, 374, 402, 876, 898, 1061
DpnII	GATC	7 cut(s)	229, 316, 372, 400, 874, 896, 1059
EaeI	YGGCCR	1 cut(s)	675
Eco130I	CCWWGG	2 cut(s)	33, 728
Eco147I	AGGCCT	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	671
Eco31I	GGTCTC	1 cut(s)	473
EcoRII	CCWGG	3 cut(s)	189, 403, 1030
EcoT14I	CCWWGG	2 cut(s)	33, 728
EcoT22I	ATGCAT	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	671
ErhI	CCWWGG	2 cut(s)	33, 728
FaeI	CATG	7 cut(s)	137, 257, 329, 575, 690, 1003, 1013
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	7 cut(s)	133, 253, 325, 571, 686, 999, 1009
FauNDI	CATATG	1 cut(s)	488
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	7 cut(s)	30, 83, 86, 241, 545, 660, 910
FokI	GGATG	2 cut(s)	551, 781
FriOI	GRGCYC	1 cut(s)	671
Fsp4HI	GCNGC	7 cut(s)	30, 83, 86, 241, 545, 660, 910
FspBI	CTAG	3 cut(s)	729, 894, 1047
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	7 cut(s)	30, 83, 86, 241, 545, 660, 910
HaeIII	GGCC	3 cut(s)	143, 189, 677
HapII	CCGG	3 cut(s)	513, 933, 945
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	7 cut(s)	137, 257, 329, 575, 690, 1003, 1013
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HindIII	AAGCTT	1 cut(s)	1015
HinfI	GANTC	5 cut(s)	169, 293, 337, 343, 496
HpaII	CCGG	3 cut(s)	513, 933, 945
HphI	GGTGA	2 cut(s)	205, 302
Hpy166II	GTNNAC	3 cut(s)	47, 275, 783
Hpy188I	TCNGA	2 cut(s)	336, 342
Hpy188III	TCNNGA	3 cut(s)	427, 1010, 1063
Hpy8I	GTNNAC	3 cut(s)	47, 275, 783
HpyAV	CCTTC	2 cut(s)	154, 1070
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	9 cut(s)	4, 128, 304, 311, 492, 620, 735, 972, 1021
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 741, 969, 993
HpyF3I	CTNAG	2 cut(s)	389, 457
Hsp92II	CATG	7 cut(s)	137, 257, 329, 575, 690, 1003, 1013
HspAI	GCGC	1 cut(s)	575
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	7 cut(s)	229, 316, 372, 400, 874, 896, 1059
LmnI	GCTCC	1 cut(s)	710
Lsp1109I	GCAGC	5 cut(s)	41, 72, 94, 252, 896
MaeI	CTAG	3 cut(s)	729, 894, 1047
MaeIII	GTNAC	3 cut(s)	193, 290, 689
MalI	GATC	7 cut(s)	231, 318, 374, 402, 876, 898, 1061
MbiI	CCGCTC	1 cut(s)	659
MboI	GATC	7 cut(s)	229, 316, 372, 400, 874, 896, 1059
MboII	GAAGA	3 cut(s)	47, 914, 941
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	4 cut(s)	229, 316, 896, 1059
MhlI	GDGCHC	3 cut(s)	458, 671, 1046
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	7 cut(s)	447, 481, 601, 614, 621, 628, 870
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	8 cut(s)	133, 588, 591, 594, 658, 691, 810, 869
Mox20I	TGGCCA	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	5 cut(s)	77, 224, 258, 551, 560
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	3 cut(s)	513, 933, 945
MspR9I	CCNGG	5 cut(s)	191, 405, 933, 945, 1032
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	3 cut(s)	287, 313, 998
MvaI	CCWGG	3 cut(s)	191, 405, 1032
MvnI	CGCG	1 cut(s)	744
MwoI	GCNNNNNNNGC	4 cut(s)	29, 741, 969, 993
NciI	CCSGG	2 cut(s)	933, 945
NdeI	CATATG	1 cut(s)	488
NdeII	GATC	7 cut(s)	229, 316, 372, 400, 874, 896, 1059
NlaIII	CATG	7 cut(s)	137, 257, 329, 575, 690, 1003, 1013
NlaIV	GGNNCC	1 cut(s)	647
NmeAIII	GCCGAG	1 cut(s)	452
NmuCI	GTSAC	3 cut(s)	193, 290, 689
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	3 cut(s)	137, 575, 1003
PagI	TCATGA	1 cut(s)	1009
PceI	AGGCCT	1 cut(s)	143
PciI	ACATGT	2 cut(s)	133, 999
PctI	GAATGC	3 cut(s)	287, 313, 998
PfeI	GAWTC	4 cut(s)	169, 337, 343, 496
PflMI	CCANNNNNTGG	1 cut(s)	353
PfoI	TCCNGGA	2 cut(s)	403, 931
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	7 cut(s)	31, 84, 87, 242, 546, 661, 911
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PscI	ACATGT	2 cut(s)	133, 999
Psp6I	CCWGG	3 cut(s)	189, 403, 1030
PspGI	CCWGG	3 cut(s)	189, 403, 1030
PspN4I	GGNNCC	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	396
PsuI	RGATCY	4 cut(s)	229, 316, 896, 1059
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	4 cut(s)	324, 394, 840, 857
RsaNI	GTAC	4 cut(s)	323, 393, 839, 856
SaqAI	TTAA	5 cut(s)	77, 224, 258, 551, 560
SatI	GCNGC	7 cut(s)	30, 83, 86, 241, 545, 660, 910
Sau3AI	GATC	7 cut(s)	229, 316, 372, 400, 874, 896, 1059
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	5 cut(s)	191, 405, 933, 945, 1032
SduI	GDGCHC	3 cut(s)	458, 671, 1046
SfcI	CTRYAG	1 cut(s)	302
Sse9I	AATT	7 cut(s)	447, 481, 601, 614, 621, 628, 870
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	3 cut(s)	88, 545, 659
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	3 cut(s)	729, 894, 1047
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	5 cut(s)	189, 403, 931, 943, 1030
StyI	CCWWGG	2 cut(s)	33, 728
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	102
TasI	AATT	7 cut(s)	447, 481, 601, 614, 621, 628, 870
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	2 cut(s)	547, 662
TfiI	GAWTC	4 cut(s)	169, 337, 343, 496
Tru1I	TTAA	5 cut(s)	77, 224, 258, 551, 560
Tru9I	TTAA	5 cut(s)	77, 224, 258, 551, 560
TseFI	GTSAC	3 cut(s)	193, 290, 689
TseI	GCWGC	5 cut(s)	29, 82, 85, 240, 909
Tsp45I	GTSAC	3 cut(s)	193, 290, 689
TspDTI	ATGAA	7 cut(s)	83, 136, 627, 675, 783, 998, 1026
TspGWI	ACGGA	3 cut(s)	162, 242, 776
Van91I	CCANNNNNTGG	1 cut(s)	353
XapI	RAATTY	3 cut(s)	481, 601, 614
XceI	RCATGY	3 cut(s)	137, 575, 1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XmaJI	CCTAGG	1 cut(s)	728
XspI	CTAG	3 cut(s)	729, 894, 1047
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.