AT1G05060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015069
Physical Location & Seq
Reverse (-)
1451002 .. 1452872
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05060.1

Sequence Viewer

Length: 762 bp
ATGAGTTTTCTTGGAGCAGGGAGACTCGCGGGAAAAGAAGCTGCCTACTTTTTCCAAGAATCCAAACACGCCGTTAATCGTCTCGCCGAGAAATCTCCGGCCACTGGCAAAAAGCTTCCATCTTCTCCGCCGGATCCACCGGAAATTCAACCTGACGTTCTTCCGGAGATTCTACGCCATTCTCTTCCTTCCAAAATATATGGTCGTCCTCCTGATCCTTCGTCTCTCTCCCAATTCTCCAAATGGGCTCTTGAATCTGACCCGAACGCAACAGTTTCTATATCCCCTGATGTCTTGAATCCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGAGGAGAGACAGATACGGCACTCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATATTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTTTGGTTTTTGGAACGGCAGCCTCGAAACTTGACATGCGTAATGCTGATGACATAAGAACGAAAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGGGCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACTATCAAGGAGAAACCAATCTTGAAGGAGCTTTCGAAAATTCTGGGACCTAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.84

Weight (kDa)

9.37

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05060
fragaria_vesca FvH4_6g42620
malus_domestica MD06G1049400.v1.1 MD17G1102200.v1.1
prunus_persica Prupe.3G212700_v2.0.a1
pyrus_communis pycom17g09680
rosa_chinensis RchiOBHm_Chr2g0158471
rosa_laevigata RLG00000021091
rosa_multiflora Rmu_sc0004855.1_g000002
rosa_roxburghii Rroxscaffold_2G00091340
rosa_rugosa Rorug02G0469700
rosa_samantha Rh2AG535200 Rh2BG548600 Rh2CG519000 Rh2DG558200
rosa_wichuraiana Rw2G044330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 3 cut(s) 29, 128, 495
AclWI GGATC 3 cut(s) 128, 141, 209
AcoI YGGCCR 2 cut(s) 99, 340
AcsI RAATTY 3 cut(s) 144, 373, 741
AcyI GRCGYC 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 104, 308
AflII CTTAAG 1 cut(s) 643
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 6 cut(s) 149, 254, 298, 448, 470, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 5 cut(s) 41, 115, 395, 452, 733
AluI AGCT 5 cut(s) 41, 115, 395, 452, 733
Alw26I GTCTC 5 cut(s) 16, 86, 228, 324, 405
AlwI GGATC 3 cut(s) 128, 141, 209
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 2 cut(s) 99, 340
ApeKI GCWGC 4 cut(s) 41, 452, 491, 542
ApoI RAATTY 3 cut(s) 144, 373, 741
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
Asp700I GAANNNNTTC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 1 cut(s) 470
AsuII TTCGAA 1 cut(s) 737
AvaII GGWCC 1 cut(s) 749
BamHI GGATCC 1 cut(s) 133
BanII GRGCYC 2 cut(s) 250, 642
BbvI GCAGC 4 cut(s) 28, 439, 503, 554
BccI CCATC 2 cut(s) 127, 345
BceAI ACGGC 4 cut(s) 56, 327, 436, 555
BcoDI GTCTC 5 cut(s) 16, 86, 228, 324, 405
BfrI CTTAAG 1 cut(s) 643
BglII AGATCT 1 cut(s) 595
BisI GCNGC 5 cut(s) 42, 453, 492, 495, 543
BlsI GCNGC 5 cut(s) 43, 454, 493, 496, 544
Bme18I GGWCC 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 2 cut(s) 135, 750
BpmI CTGGAG 1 cut(s) 635
Bpu14I TTCGAA 1 cut(s) 737
BsaHI GRCGYC 1 cut(s) 386
BsaWI WCCGGW 3 cut(s) 139, 163, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 308
Bse1I ACTGG 2 cut(s) 109, 618
BseAI TCCGGA 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 104, 308
BseMII CTCAG 3 cut(s) 319, 360, 429
BseNI ACTGG 2 cut(s) 109, 618
BseRI GAGGAG 1 cut(s) 421
BseX3I CGGCCG 1 cut(s) 340
BseXI GCAGC 4 cut(s) 28, 439, 503, 554
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 2 cut(s) 101, 342
BsiEI CGRYCG 1 cut(s) 343
BsiSI CCGG 5 cut(s) 98, 131, 140, 164, 362
BslI CCNNNNNNNGG 2 cut(s) 104, 308
BsmAI GTCTC 5 cut(s) 16, 86, 228, 324, 405
BsmBI CGTCTC 2 cut(s) 86, 228
BsnI GGCC 2 cut(s) 101, 342
Bsp119I TTCGAA 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 250, 642
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 3 cut(s) 133, 214, 595
BspACI CCGC 3 cut(s) 29, 128, 495
BspANI GGCC 2 cut(s) 101, 342
BspCNI CTCAG 3 cut(s) 318, 361, 430
BspEI TCCGGA 1 cut(s) 163
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 135, 750
BspPI GGATC 3 cut(s) 128, 141, 209
BspT104I TTCGAA 1 cut(s) 737
BspTI CTTAAG 1 cut(s) 643
BsrI ACTGG 2 cut(s) 109, 618
BssMI GATC 3 cut(s) 133, 214, 595
BssNI GRCGYC 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 386
BstAFI CTTAAG 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 737
BstDEI CTNAG 3 cut(s) 305, 369, 438
BstENI CCTNNNNNAGG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 3 cut(s) 136, 217, 598
BstMAI GTCTC 5 cut(s) 16, 86, 228, 324, 405
BstMBI GATC 3 cut(s) 133, 214, 595
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 2 cut(s) 392, 491
BstNSI RCATGY 2 cut(s) 562, 667
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 4 cut(s) 28, 439, 503, 554
BstX2I RGATCY 2 cut(s) 133, 595
BstYI RGATCY 2 cut(s) 133, 595
BstZI CGGCCG 1 cut(s) 340
BsuRI GGCC 2 cut(s) 101, 342
BtsIMutI CAGTG 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 749
CseI GACGC 1 cut(s) 375
CviAII CATG 2 cut(s) 559, 664
DdeI CTNAG 3 cut(s) 305, 369, 438
DpnI GATC 3 cut(s) 135, 216, 597
DpnII GATC 3 cut(s) 133, 214, 595
EaeI YGGCCR 2 cut(s) 99, 340
EagI CGGCCG 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 340
Eco24I GRGCYC 2 cut(s) 250, 642
Eco47I GGWCC 1 cut(s) 749
Eco52I CGGCCG 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 749
EcoRI GAATTC 1 cut(s) 373
EcoT38I GRGCYC 2 cut(s) 250, 642
Esp3I CGTCTC 2 cut(s) 86, 228
FaeI CATG 2 cut(s) 562, 667
FaiI YATR 9 cut(s) 199, 201, 281, 315, 474, 560, 578, 665, 681
FatI CATG 2 cut(s) 558, 663
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 5 cut(s) 42, 453, 492, 495, 543
FriOI GRGCYC 2 cut(s) 250, 642
Fsp4HI GCNGC 5 cut(s) 42, 453, 492, 495, 543
GluI GCNGC 5 cut(s) 42, 453, 492, 495, 543
GsuI CTGGAG 1 cut(s) 635
HaeIII GGCC 2 cut(s) 101, 342
HapII CCGG 5 cut(s) 98, 131, 140, 164, 362
HgaI GACGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 2 cut(s) 562, 667
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 7 cut(s) 24, 59, 169, 254, 298, 365, 617
HpaII CCGG 5 cut(s) 98, 131, 140, 164, 362
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 3 cut(s) 259, 308, 370
Hpy188III TCNNGA 6 cut(s) 164, 212, 251, 295, 437, 724
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 6 cut(s) 198, 228, 455, 619, 686, 721
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 491
HpyF3I CTNAG 3 cut(s) 305, 369, 438
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 2 cut(s) 562, 667
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 3 cut(s) 133, 214, 595
LmnI GCTCC 2 cut(s) 14, 730
Lsp1109I GCAGC 4 cut(s) 28, 439, 503, 554
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 135, 216, 597
MboI GATC 3 cut(s) 133, 214, 595
MboII GAAGA 5 cut(s) 114, 152, 176, 360, 682
MflI RGATCY 2 cut(s) 133, 595
MhlI GDGCHC 2 cut(s) 250, 642
MluCI AATT 6 cut(s) 144, 233, 373, 401, 443, 741
MlyI GAGTC 2 cut(s) 18, 626
MnlI CCTC 5 cut(s) 219, 302, 312, 399, 556
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 3 cut(s) 75, 644, 760
MspCI CTTAAG 1 cut(s) 643
MspI CCGG 5 cut(s) 98, 131, 140, 164, 362
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 392, 491
NdeII GATC 3 cut(s) 133, 214, 595
NlaIII CATG 2 cut(s) 562, 667
NlaIV GGNNCC 2 cut(s) 135, 750
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 2 cut(s) 562, 667
NspV TTCGAA 1 cut(s) 737
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 2 cut(s) 383, 545
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 5 cut(s) 59, 169, 254, 298, 365
PkrI GCNGC 5 cut(s) 43, 454, 493, 496, 544
PleI GAGTC 2 cut(s) 18, 625
PpsI GAGTC 2 cut(s) 18, 625
PpuMI RGGWCCY 1 cut(s) 749
PscI ACATGT 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 749
PspN4I GGNNCC 2 cut(s) 135, 750
PspPI GGNCC 1 cut(s) 749
PspPPI RGGWCCY 1 cut(s) 749
PsuI RGATCY 2 cut(s) 133, 595
SaqAI TTAA 3 cut(s) 75, 644, 760
SatI GCNGC 5 cut(s) 42, 453, 492, 495, 543
Sau3AI GATC 3 cut(s) 133, 214, 595
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 2 cut(s) 18, 626
SduI GDGCHC 2 cut(s) 250, 642
SfuI TTCGAA 1 cut(s) 737
SinI GGWCC 1 cut(s) 749
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 6 cut(s) 144, 233, 373, 401, 443, 741
SsiI CCGC 3 cut(s) 29, 128, 495
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 159
TaqI TCGA 4 cut(s) 548, 620, 668, 737
TasI AATT 6 cut(s) 144, 233, 373, 401, 443, 741
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 5 cut(s) 59, 169, 254, 298, 365
Tru1I TTAA 3 cut(s) 75, 644, 760
Tru9I TTAA 3 cut(s) 75, 644, 760
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 41, 452, 491, 542
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 414, 638, 705
TspRI CASTG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 643
VpaK11BI GGWCC 1 cut(s) 749
XagI CCTNNNNNAGG 1 cut(s) 306
XapI RAATTY 3 cut(s) 144, 373, 741
XceI RCATGY 2 cut(s) 562, 667
XmnI GAANNNNTTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.