MD17G1102200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015069
Physical Location & Seq
Forward (+)
8700047 .. 8702246
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1102200.v1.1.491

Sequence Viewer

Length: 636 bp
ATGAGCTTTCTCGCGGGAAGATTAGCCGGGAAAGAGGGAGCCTATTTTCTCCAGGAATCGAAACAGGCGGTGGGCCGCCTCGTATCCCAGAAGAAGAAGCTCCCATCATCGCCGTCCGAAGCTTCCTCCGCCGCGACAGAGCACGAATCGCAAGCCGACGTGCTTCCGGAGGTCCTGAGGCACTCTCTGCCCTCCAAGATCTTCCACCAACCTTCCGAAACGACGTCGTCTCTGGACACGGCCTCCAAATGGGTTCTTGAATCCGATTCCAAGAACGGCCATTTCGTGTCCGCCGAGGCTCTCAACCCTCTGAGGGCTTACCTGTCGCTGCCCCAGGTCACTTTTGGCACCAAAAGGTGGCAACTGCCGGAATCAGAAAGCTCATTGTCAGCCTCGACGGCTAATGAGCTGCGTCGAGACAGGCATACTACCCACATTAATCCTGAAAAGTTGAAGGCTGCAGCCGAAGGGTTTACTCAAATTGGGAAGGCATTTGCTGTTGCAACTGCAGTAGTATTTGGTGGTGCCACCTTGCTATTAGGAATGGCCGTCTCAAAATTACAGTTGCAAAATAGTGAAGACGTCCGAACAAAAGGGAGAGACCTTATGGAGCCAAAACTGGAGATGATTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.93

Weight (kDa)

8.8

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05060
fragaria_vesca FvH4_6g42620
malus_domestica MD06G1049400.v1.1 MD17G1102200.v1.1
prunus_persica Prupe.3G212700_v2.0.a1
pyrus_communis pycom17g09680
rosa_chinensis RchiOBHm_Chr2g0158471
rosa_laevigata RLG00000021091
rosa_multiflora Rmu_sc0004855.1_g000002
rosa_roxburghii Rroxscaffold_2G00091340
rosa_rugosa Rorug02G0469700
rosa_samantha Rh2AG535200 Rh2BG548600 Rh2CG519000 Rh2DG558200
rosa_wichuraiana Rw2G044330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 227, 585
AccB1I GGYRCC 2 cut(s) 347, 524
AccB7I CCANNNNNTGG 1 cut(s) 357
AccII CGCG 2 cut(s) 14, 134
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 6 cut(s) 14, 68, 76, 129, 132, 291
AcoI YGGCCR 2 cut(s) 277, 546
AcyI GRCGYC 2 cut(s) 224, 582
AfiI CCNNNNNNNGG 3 cut(s) 249, 313, 357
AgsI TTSAA 2 cut(s) 260, 454
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 2 cut(s) 51, 333
AluBI AGCT 5 cut(s) 6, 100, 122, 381, 409
AluI AGCT 5 cut(s) 6, 100, 122, 381, 409
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 4 cut(s) 234, 411, 556, 594
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 4 cut(s) 73, 240, 277, 546
ApeKI GCWGC 4 cut(s) 328, 409, 458, 461
AseI ATTAAT 1 cut(s) 438
AspS9I GGNCC 2 cut(s) 73, 172
AsuC2I CCSGG 1 cut(s) 28
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 176
BanI GGYRCC 2 cut(s) 347, 524
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 315, 396, 445, 473
BccI CCATC 1 cut(s) 112
BceAI ACGGC 5 cut(s) 97, 255, 292, 414, 533
BciT130I CCWGG 2 cut(s) 53, 335
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 234, 411, 556, 594
BfmI CTRYAG 2 cut(s) 459, 507
BfuI GTATCC 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 398
BglII AGATCT 1 cut(s) 198
BisI GCNGC 6 cut(s) 76, 132, 329, 410, 459, 462
BlsI GCNGC 6 cut(s) 77, 133, 330, 411, 460, 463
Bme1390I CCNGG 3 cut(s) 28, 53, 335
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 73, 172
BmiI GGNNCC 4 cut(s) 40, 349, 526, 612
BmrFI CCNGG 3 cut(s) 28, 53, 335
BpiI GAAGAC 1 cut(s) 585
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BpmI CTGGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 28
BsaHI GRCGYC 2 cut(s) 224, 582
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 294, 333
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 313, 357
Bse1I ACTGG 1 cut(s) 624
Bse21I CCTNAGG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 166
BseBI CCWGG 2 cut(s) 53, 335
BseDI CCNNGG 2 cut(s) 294, 333
BseLI CCNNNNNNNGG 3 cut(s) 249, 313, 357
BseMII CTCAG 2 cut(s) 167, 302
BseNI ACTGG 1 cut(s) 624
BseXI GCAGC 4 cut(s) 315, 396, 445, 473
Bsh1236I CGCG 2 cut(s) 14, 134
BshFI GGCC 4 cut(s) 75, 242, 279, 548
BshNI GGYRCC 2 cut(s) 347, 524
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 3 cut(s) 27, 167, 368
BslI CCNNNNNNNGG 3 cut(s) 249, 313, 357
BsmAI GTCTC 4 cut(s) 234, 411, 556, 594
BsmBI CGTCTC 2 cut(s) 234, 556
BsnI GGCC 4 cut(s) 75, 242, 279, 548
Bso31I GGTCTC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 6 cut(s) 14, 68, 76, 129, 132, 291
BspANI GGCC 4 cut(s) 75, 242, 279, 548
BspCNI CTCAG 2 cut(s) 168, 303
BspEI TCCGGA 1 cut(s) 166
BspFNI CGCG 2 cut(s) 14, 134
BspLI GGNNCC 4 cut(s) 40, 349, 526, 612
BspMAI CTGCAG 2 cut(s) 463, 511
BspT107I GGYRCC 2 cut(s) 347, 524
BspTNI GGTCTC 1 cut(s) 594
BsrI ACTGG 1 cut(s) 624
BssECI CCNNGG 2 cut(s) 294, 333
BssMI GATC 1 cut(s) 198
BssNI GRCGYC 2 cut(s) 224, 582
Bst2UI CCWGG 2 cut(s) 53, 335
Bst4CI ACNGT 1 cut(s) 564
BstACI GRCGYC 2 cut(s) 224, 582
BstAPI GCANNNNNTGC 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 176, 311
BstFNI CGCG 2 cut(s) 14, 134
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 4 cut(s) 234, 411, 556, 594
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 4 cut(s) 128, 148, 187, 398
BstNI CCWGG 2 cut(s) 53, 335
BstSCI CCNGG 3 cut(s) 26, 51, 333
BstSFI CTRYAG 2 cut(s) 459, 507
BstUI CGCG 2 cut(s) 14, 134
BstV1I GCAGC 4 cut(s) 315, 396, 445, 473
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 176
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 4 cut(s) 75, 242, 279, 548
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 73, 172
CseI GACGC 1 cut(s) 401
DdeI CTNAG 2 cut(s) 176, 311
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EaeI YGGCCR 2 cut(s) 277, 546
EciI GGCGGA 2 cut(s) 118, 280
Eco31I GGTCTC 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 172
Eco81I CCTNAGG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 51, 333
Esp3I CGTCTC 2 cut(s) 234, 556
FaiI YATR 2 cut(s) 426, 608
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 6 cut(s) 76, 132, 329, 410, 459, 462
Fsp4HI GCNGC 6 cut(s) 76, 132, 329, 410, 459, 462
GluI GCNGC 6 cut(s) 76, 132, 329, 410, 459, 462
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 4 cut(s) 75, 242, 279, 548
HapII CCGG 3 cut(s) 27, 167, 368
HgaI GACGC 1 cut(s) 401
Hin1I GRCGYC 2 cut(s) 224, 582
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 6 cut(s) 56, 146, 260, 266, 371, 628
HpaII CCGG 3 cut(s) 27, 167, 368
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 6 cut(s) 118, 217, 265, 312, 376, 587
Hpy188III TCNNGA 6 cut(s) 167, 175, 233, 257, 416, 443
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 5 cut(s) 161, 226, 229, 400, 417
HpyAV CCTTC 4 cut(s) 222, 448, 461, 481
HpyCH4III ACNGT 1 cut(s) 564
HpyCH4IV ACGT 3 cut(s) 159, 224, 582
HpyCH4V TGCA 4 cut(s) 461, 503, 509, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 148, 187, 398
HpyF3I CTNAG 2 cut(s) 176, 311
HpySE526I ACGT 3 cut(s) 159, 224, 582
Hsp92I GRCGYC 2 cut(s) 224, 582
Kpn2I TCCGGA 1 cut(s) 166
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 3 cut(s) 38, 105, 610
Lsp1109I GCAGC 4 cut(s) 315, 396, 445, 473
MaeII ACGT 3 cut(s) 159, 224, 582
MaeIII GTNAC 1 cut(s) 337
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 5 cut(s) 30, 103, 106, 193, 590
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 480, 557
MroI TCCGGA 1 cut(s) 166
MseI TTAA 1 cut(s) 438
MspI CCGG 3 cut(s) 27, 167, 368
MspR9I CCNGG 3 cut(s) 28, 53, 335
MvaI CCWGG 2 cut(s) 53, 335
MvnI CGCG 2 cut(s) 14, 134
MwoI GCNNNNNNNGC 4 cut(s) 128, 148, 187, 398
NciI CCSGG 1 cut(s) 28
NdeII GATC 1 cut(s) 198
NlaIV GGNNCC 4 cut(s) 40, 349, 526, 612
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 291
PfeI GAWTC 6 cut(s) 56, 146, 260, 266, 371, 628
PflFI GACNNNGTC 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 357
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 6 cut(s) 77, 133, 330, 411, 460, 463
PpuMI RGGWCCY 1 cut(s) 172
PshBI ATTAAT 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 51, 333
PspGI CCWGG 2 cut(s) 51, 333
PspN4I GGNNCC 4 cut(s) 40, 349, 526, 612
PspPI GGNCC 2 cut(s) 73, 172
PspPPI RGGWCCY 1 cut(s) 172
PstI CTGCAG 2 cut(s) 463, 511
PsuI RGATCY 1 cut(s) 198
PsyI GACNNNGTC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 6 cut(s) 76, 132, 329, 410, 459, 462
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 2 cut(s) 73, 172
ScrFI CCNGG 3 cut(s) 28, 53, 335
SduI GDGCHC 1 cut(s) 144
SfcI CTRYAG 2 cut(s) 459, 507
SinI GGWCC 1 cut(s) 172
Sse9I AATT 2 cut(s) 480, 557
SsiI CCGC 6 cut(s) 14, 68, 76, 129, 132, 291
StyD4I CCNGG 3 cut(s) 26, 51, 333
TaaI ACNGT 1 cut(s) 564
TaiI ACGT 3 cut(s) 162, 227, 585
TaqI TCGA 3 cut(s) 59, 395, 415
TasI AATT 2 cut(s) 480, 557
TauI GCSGC 2 cut(s) 78, 134
TfiI GAWTC 6 cut(s) 56, 146, 260, 266, 371, 628
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 4 cut(s) 328, 409, 458, 461
Tsp45I GTSAC 1 cut(s) 337
Tth111I GACNNNGTC 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 172
VspI ATTAAT 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
ZraI GACGTC 2 cut(s) 225, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.