Prupe.3G212700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015069
Physical Location & Seq
Reverse (-)
21684186 .. 21686798
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G212700.1

Sequence Viewer

Length: 777 bp
ATGAGCTTTCTCGCGGGAAGACTAGCCGGGAAAGAGGCAGCATATTTCTTCCAGGAATCCAAACAGGCGGTGGGCCGTCTTGCATCCCAGAAAACCCCAACCCAGAAGAAGCTCCTATCGCCGCCTTCTGAAGCTTCCTCGGCTACTGAGCAGGAAGCCCAAGCCGACGTGCTTCCCGAGGTGCTGAGGCACTCTTTGCCCTCCAAGATTTTCCACCAACCCTCTGAAATGACGTCGTCCCTGGACACAGGCTCCAAATGGGTTCTTCAATCTGACCCCAAGGGTGGTTATTTTGTCTCTGCTGAGGCTCTCAACCCTCTAAGGGCTTATCTTTCACTGCCGCAGGTCACTTTTGGGCCCAAAAGGTGGCAACTGCCCGAATCAGAAAGCTCGGTGTCAGCCTCAACGGCTAATGAACTGCGCCGAGACAGGCACACCACCCCCATTAATCTGGAAAAGTTGAAGGCTGCAACTGAAGGGCTTACACAAATTGGAAAGGCATTCGCTGTTGCAACAGCAGTAGTATTTGGCGGTGCGACCTTGCTATTTGGAATGGCTGTCTCAAAATTACAGTTACAAAATAGTGAAGATATCCGAACAAAAGGGAGAGACCTTGTCGAGCCAAAGTTAGAGATGATTCAGGAGCAACTGGCTCCCTTGAGAGCGTGGGCCGAAAAAACGTCGAGGAAATGGCGCTTGGAAAGGGAAGAAAATATACAAGAGAAGCCTATTATTAAGGCGCTTTCTAAAATGTTGGGTGCAAAGACATCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

28.41

Weight (kDa)

9.52

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05060
fragaria_vesca FvH4_6g42620
malus_domestica MD06G1049400.v1.1 MD17G1102200.v1.1
prunus_persica Prupe.3G212700_v2.0.a1
pyrus_communis pycom17g09680
rosa_chinensis RchiOBHm_Chr2g0158471
rosa_laevigata RLG00000021091
rosa_multiflora Rmu_sc0004855.1_g000002
rosa_roxburghii Rroxscaffold_2G00091340
rosa_rugosa Rorug02G0469700
rosa_samantha Rh2AG535200 Rh2BG548600 Rh2CG519000 Rh2DG558200
rosa_wichuraiana Rw2G044330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 366
AccII CGCG 1 cut(s) 14
AciI CCGC 5 cut(s) 14, 68, 122, 341, 531
AcuI CTGAAG 2 cut(s) 150, 495
AcyI GRCGYC 1 cut(s) 233
AfiI CCNNNNNNNGG 3 cut(s) 284, 322, 366
AgsI TTSAA 2 cut(s) 269, 463
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 2 cut(s) 51, 240
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AluBI AGCT 4 cut(s) 6, 112, 134, 390
AluI AGCT 4 cut(s) 6, 112, 134, 390
Alw26I GTCTC 4 cut(s) 301, 420, 565, 603
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 3 cut(s) 73, 356, 669
ApaI GGGCCC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 38, 467
AseI ATTAAT 1 cut(s) 447
AspLEI GCGC 3 cut(s) 423, 696, 742
AspS9I GGNCC 4 cut(s) 73, 356, 357, 669
AsuC2I CCSGG 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 360
BarI GAAGNNNNNNTAC 2 cut(s) 699, 731
BbsI GAAGAC 1 cut(s) 25
BbvCI CCTCAGC 2 cut(s) 185, 303
BbvI GCAGC 2 cut(s) 50, 454
BceAI ACGGC 2 cut(s) 60, 423
BciT130I CCWGG 2 cut(s) 53, 242
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 301, 420, 565, 603
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 2 cut(s) 697, 743
BfuAI ACCTGC 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 4 cut(s) 39, 122, 341, 468
BlsI GCNGC 4 cut(s) 40, 123, 342, 469
Bme1390I CCNGG 3 cut(s) 28, 53, 242
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 4 cut(s) 73, 356, 357, 669
BmiI GGNNCC 3 cut(s) 253, 358, 654
BmrFI CCNGG 3 cut(s) 28, 53, 242
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 2 cut(s) 185, 303
BpuEI CTTGAG 1 cut(s) 679
BpuMI CCSGG 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 603
BsaJI CCNNGG 4 cut(s) 138, 177, 240, 279
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 322, 366
Bse1I ACTGG 1 cut(s) 654
BseBI CCWGG 2 cut(s) 53, 242
BseDI CCNNGG 4 cut(s) 138, 177, 240, 279
BseGI GGATG 2 cut(s) 83, 767
BseLI CCNNNNNNNGG 3 cut(s) 284, 322, 366
BseMII CTCAG 3 cut(s) 138, 176, 294
BseNI ACTGG 1 cut(s) 654
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 2 cut(s) 50, 454
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 75, 358, 671
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 3 cut(s) 284, 322, 366
BsmAI GTCTC 4 cut(s) 301, 420, 565, 603
BsmFI GGGAC 1 cut(s) 223
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 3 cut(s) 75, 358, 671
Bso31I GGTCTC 1 cut(s) 603
BsoBI CYCGRG 1 cut(s) 176
Bsp120I GGGCCC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 360
BspACI CCGC 5 cut(s) 14, 68, 122, 341, 531
BspANI GGCC 3 cut(s) 75, 358, 671
BspCNI CTCAG 3 cut(s) 139, 177, 295
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 3 cut(s) 253, 358, 654
BspMI ACCTGC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 603
BsrI ACTGG 1 cut(s) 654
BssECI CCNNGG 4 cut(s) 138, 177, 240, 279
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 53, 242
Bst4CI ACNGT 1 cut(s) 573
BstACI GRCGYC 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 196
BstDEI CTNAG 4 cut(s) 147, 185, 303, 320
BstF5I GGATG 2 cut(s) 83, 767
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 2 cut(s) 697, 743
BstHHI GCGC 3 cut(s) 423, 696, 742
BstMAI GTCTC 4 cut(s) 301, 420, 565, 603
BstMWI GCNNNNNNNGC 4 cut(s) 118, 140, 196, 407
BstNI CCWGG 2 cut(s) 53, 242
BstSCI CCNGG 3 cut(s) 26, 51, 240
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 50, 454
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 451
BsuRI GGCC 3 cut(s) 75, 358, 671
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 83, 767
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 1 cut(s) 335
BveI ACCTGC 1 cut(s) 334
CfoI GCGC 3 cut(s) 423, 696, 742
Cfr13I GGNCC 4 cut(s) 73, 356, 357, 669
DdeI CTNAG 4 cut(s) 147, 185, 303, 320
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 603
Eco32I GATATC 1 cut(s) 592
Eco57I CTGAAG 2 cut(s) 150, 495
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 51, 240
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 279
FaiI YATR 2 cut(s) 43, 716
FaqI GGGAC 1 cut(s) 223
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 4 cut(s) 39, 122, 341, 468
FokI GGATG 2 cut(s) 70, 754
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 4 cut(s) 39, 122, 341, 468
FspBI CTAG 1 cut(s) 23
GlaI GCGC 3 cut(s) 422, 695, 741
GluI GCNGC 4 cut(s) 39, 122, 341, 468
HaeII RGCGCY 2 cut(s) 697, 743
HaeIII GGCC 3 cut(s) 75, 358, 671
HapII CCGG 1 cut(s) 27
HhaI GCGC 3 cut(s) 423, 696, 742
Hin1I GRCGYC 1 cut(s) 233
Hin6I GCGC 3 cut(s) 421, 694, 740
HinP1I GCGC 3 cut(s) 421, 694, 740
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 3 cut(s) 56, 380, 637
HpaII CCGG 1 cut(s) 27
Hpy188I TCNGA 5 cut(s) 130, 226, 274, 385, 596
Hpy188III TCNNGA 3 cut(s) 176, 452, 641
Hpy99I CGWCG 3 cut(s) 170, 238, 685
HpyAV CCTTC 3 cut(s) 135, 457, 470
HpyCH4III ACNGT 1 cut(s) 573
HpyCH4IV ACGT 3 cut(s) 168, 233, 680
HpyCH4V TGCA 4 cut(s) 83, 470, 512, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 140, 196, 407
HpyF3I CTNAG 4 cut(s) 147, 185, 303, 320
HpySE526I ACGT 3 cut(s) 168, 233, 680
Hsp92I GRCGYC 1 cut(s) 233
HspAI GCGC 3 cut(s) 421, 694, 740
LmnI GCTCC 4 cut(s) 117, 257, 643, 658
Lsp1109I GCAGC 2 cut(s) 50, 454
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 23
MaeII ACGT 3 cut(s) 168, 233, 680
MaeIII GTNAC 2 cut(s) 346, 573
MboII GAAGA 6 cut(s) 30, 40, 118, 257, 599, 719
MfeI CAATTG 1 cut(s) 772
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 3 cut(s) 489, 566, 772
MseI TTAA 2 cut(s) 447, 735
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 3 cut(s) 28, 53, 242
MunI CAATTG 1 cut(s) 772
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 2 cut(s) 53, 242
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 118, 140, 196, 407
NciI CCSGG 1 cut(s) 28
NlaIV GGNNCC 3 cut(s) 253, 358, 654
NmeAIII GCCGAG 2 cut(s) 119, 449
NmuCI GTSAC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 3 cut(s) 56, 380, 637
PflFI GACNNNGTC 2 cut(s) 235, 614
PflMI CCANNNNNTGG 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 4 cut(s) 40, 123, 342, 469
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 51, 240
PspGI CCWGG 2 cut(s) 51, 240
PspN4I GGNNCC 3 cut(s) 253, 358, 654
PspOMI GGGCCC 1 cut(s) 356
PspPI GGNCC 4 cut(s) 73, 356, 357, 669
PsyI GACNNNGTC 2 cut(s) 235, 614
SaqAI TTAA 2 cut(s) 447, 735
SatI GCNGC 4 cut(s) 39, 122, 341, 468
Sau96I GGNCC 4 cut(s) 73, 356, 357, 669
ScrFI CCNGG 3 cut(s) 28, 53, 242
SduI GDGCHC 1 cut(s) 360
SfaNI GCATC 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
Sse9I AATT 3 cut(s) 489, 566, 772
SsiI CCGC 5 cut(s) 14, 68, 122, 341, 531
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 26, 51, 240
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 573
TaiI ACGT 3 cut(s) 171, 236, 683
TaqI TCGA 2 cut(s) 618, 683
TasI AATT 3 cut(s) 489, 566, 772
TauI GCSGC 2 cut(s) 124, 343
TfiI GAWTC 3 cut(s) 56, 380, 637
Tru1I TTAA 2 cut(s) 447, 735
Tru9I TTAA 2 cut(s) 447, 735
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 38, 467
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 1 cut(s) 342
Tth111I GACNNNGTC 2 cut(s) 235, 614
Van91I CCANNNNNTGG 1 cut(s) 366
VspI ATTAAT 1 cut(s) 447
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 1 cut(s) 23
ZraI GACGTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.