RLG00000021091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015069
Physical Location & Seq
Reverse (-)
71842877 .. 71845473
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021091

Sequence Viewer

Length: 765 bp
ATGAGTTTTCTCGCGGGAAGATTAGCCGGGAAAGAAGGAGCCTACTTCTTCCAGGAATCCAAACAGGCCGTGGGCCGTCTCGTATCCCGGAAAGGCCCGGCCCACAAGAAGCTCCCGTCGGCGGCGGCGACTGAGCAGGAATCCCAAGCCGACGTGCTTCCCGAGGTGCTGAGGCACTCTCTGCCCTCCAGAATTTACCATCAACAGCCCGAAATGGCGTCGTCTCTGGACACAGCTTCCAAATGGGTTCTTAAATCTGATTCCAAAAACCCATTTTCCATCTCTTCTCAGACTCTTAACCCTCTTAGGGATTATGTGTCCCTGCCGCAGGTCACTTTTGGCCCCAAAAGGTGGCAGCTGCCTGAATCAGAAAACTCGATGTCGGCCTCAACGGCTAATGAATTGCGTCGGGACAGGCACCCCACCCCCATTAATCCTGAAAAGTTGAAGGCTGCAGCTGAAGGGCTTACACGAATTGGAGTGGCATTCGCTATTGCAACTGCAATAGTTTTTGGTGGTGCCACCTTGGTAATTGGAATGGCTGTCTCAAAGCTACAGGTGCAGAATAGTGATGACATCCGAACAAAAGGGAAAGACCTGGTGGAGCCAAAATTTGAAGAGATTCGTGAGCAACTGGTTCCCTTAAAGGCTTGGGTTGAAAATATGTCCCGGAAATGGCACTTGGAAAAGGGGGGAGATGTAAAGGAGAAGCCTCTTATAAAGTCACTTTCTAAAATGTTAGGTGCCAAGACATCCAACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.04

Weight (kDa)

9.79

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05060
fragaria_vesca FvH4_6g42620
malus_domestica MD06G1049400.v1.1 MD17G1102200.v1.1
prunus_persica Prupe.3G212700_v2.0.a1
pyrus_communis pycom17g09680
rosa_chinensis RchiOBHm_Chr2g0158471
rosa_laevigata RLG00000021091
rosa_multiflora Rmu_sc0004855.1_g000002
rosa_roxburghii Rroxscaffold_2G00091340
rosa_rugosa Rorug02G0469700
rosa_samantha Rh2AG535200 Rh2BG548600 Rh2CG519000 Rh2DG558200
rosa_wichuraiana Rw2G044330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 719
Acc36I ACCTGC 1 cut(s) 319
AccB1I GGYRCC 3 cut(s) 417, 518, 743
AccB7I CCANNNNNTGG 1 cut(s) 351
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 14, 122, 125, 326
AcsI RAATTY 2 cut(s) 192, 611
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 218
AfiI CCNNNNNNNGG 5 cut(s) 121, 307, 328, 351, 675
AgsI TTSAA 3 cut(s) 448, 617, 659
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 2 cut(s) 51, 597
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 5 cut(s) 112, 236, 358, 458, 553
AluI AGCT 5 cut(s) 112, 236, 358, 458, 553
Alw26I GTCTC 3 cut(s) 83, 228, 550
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 6 cut(s) 66, 73, 94, 99, 340, 384
ApeKI GCWGC 4 cut(s) 355, 358, 452, 455
ApoI RAATTY 2 cut(s) 192, 611
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 621
AspS9I GGNCC 4 cut(s) 73, 95, 100, 341
AsuC2I CCSGG 4 cut(s) 28, 88, 98, 670
AvaI CYCGRG 1 cut(s) 161
BanI GGYRCC 3 cut(s) 417, 518, 743
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 345, 367, 439, 467
BccI CCATC 2 cut(s) 207, 287
BceAI ACGGC 3 cut(s) 53, 60, 408
BciT130I CCWGG 2 cut(s) 53, 599
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 4 cut(s) 28, 88, 98, 670
BcoDI GTCTC 3 cut(s) 83, 228, 550
BfmI CTRYAG 2 cut(s) 453, 554
BfuAI ACCTGC 1 cut(s) 319
BfuI GTATCC 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 7 cut(s) 123, 126, 326, 356, 359, 453, 456
BlsI GCNGC 7 cut(s) 124, 127, 327, 357, 360, 454, 457
Bme1390I CCNGG 6 cut(s) 28, 53, 88, 98, 599, 670
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 4 cut(s) 73, 95, 100, 341
BmiI GGNNCC 7 cut(s) 40, 343, 419, 520, 606, 639, 745
BmrFI CCNGG 6 cut(s) 28, 53, 88, 98, 599, 670
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BpmI CTGGAG 1 cut(s) 172
Bpu10I CCTNAGC 1 cut(s) 170
BpuMI CCSGG 4 cut(s) 28, 88, 98, 670
BsaHI GRCGYC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 69, 162, 525
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 307, 328, 351, 675
Bse1I ACTGG 1 cut(s) 639
BseBI CCWGG 2 cut(s) 53, 599
BseDI CCNNGG 3 cut(s) 69, 162, 525
BseGI GGATG 2 cut(s) 576, 752
BseLI CCNNNNNNNGG 5 cut(s) 121, 307, 328, 351, 675
BseMII CTCAG 3 cut(s) 123, 161, 302
BseNI ACTGG 1 cut(s) 639
BseXI GCAGC 4 cut(s) 345, 367, 439, 467
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 6 cut(s) 68, 75, 96, 101, 342, 386
BshNI GGYRCC 3 cut(s) 417, 518, 743
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 4 cut(s) 27, 88, 98, 670
BslFI GGGAC 3 cut(s) 304, 425, 652
BslI CCNNNNNNNGG 5 cut(s) 121, 307, 328, 351, 675
BsmAI GTCTC 3 cut(s) 83, 228, 550
BsmBI CGTCTC 2 cut(s) 83, 228
BsmFI GGGAC 3 cut(s) 304, 425, 652
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 6 cut(s) 68, 75, 96, 101, 342, 386
BsoBI CYCGRG 1 cut(s) 161
BspACI CCGC 4 cut(s) 14, 122, 125, 326
BspANI GGCC 6 cut(s) 68, 75, 96, 101, 342, 386
BspCNI CTCAG 3 cut(s) 124, 162, 301
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 7 cut(s) 40, 343, 419, 520, 606, 639, 745
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 319
BspT107I GGYRCC 3 cut(s) 417, 518, 743
BsrI ACTGG 1 cut(s) 639
BssECI CCNNGG 3 cut(s) 69, 162, 525
BssNI GRCGYC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 2 cut(s) 53, 599
Bst6I CTCTTC 2 cut(s) 289, 612
BstACI GRCGYC 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 181
BstDEI CTNAG 4 cut(s) 132, 170, 288, 305
BstDSI CCRYGG 1 cut(s) 69
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 576, 752
BstFNI CGCG 1 cut(s) 14
BstMAI GTCTC 3 cut(s) 83, 228, 550
BstMWI GCNNNNNNNGC 3 cut(s) 181, 392, 559
BstNI CCWGG 2 cut(s) 53, 599
BstSCI CCNGG 6 cut(s) 26, 51, 86, 96, 597, 668
BstSFI CTRYAG 2 cut(s) 453, 554
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 4 cut(s) 345, 367, 439, 467
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 6 cut(s) 68, 75, 96, 101, 342, 386
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 576, 752
BveI ACCTGC 1 cut(s) 319
Cfr13I GGNCC 4 cut(s) 73, 95, 100, 341
CseI GACGC 2 cut(s) 207, 395
CsiI ACCWGGT 1 cut(s) 597
DdeI CTNAG 4 cut(s) 132, 170, 288, 305
Eam1104I CTCTTC 2 cut(s) 289, 612
EarI CTCTTC 2 cut(s) 289, 612
Eco130I CCWWGG 1 cut(s) 525
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 51, 597
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
Esp3I CGTCTC 2 cut(s) 83, 228
FaiI YATR 3 cut(s) 315, 665, 719
FaqI GGGAC 3 cut(s) 304, 425, 652
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 7 cut(s) 123, 126, 326, 356, 359, 453, 456
FokI GGATG 2 cut(s) 563, 739
Fsp4HI GCNGC 7 cut(s) 123, 126, 326, 356, 359, 453, 456
GluI GCNGC 7 cut(s) 123, 126, 326, 356, 359, 453, 456
GsuI CTGGAG 1 cut(s) 172
HaeIII GGCC 6 cut(s) 68, 75, 96, 101, 342, 386
HapII CCGG 4 cut(s) 27, 88, 98, 670
HgaI GACGC 2 cut(s) 207, 395
Hin1I GRCGYC 1 cut(s) 218
HinfI GANTC 6 cut(s) 56, 140, 260, 292, 365, 622
HpaII CCGG 4 cut(s) 27, 88, 98, 670
Hpy188I TCNGA 4 cut(s) 259, 291, 370, 581
Hpy188III TCNNGA 6 cut(s) 161, 189, 227, 410, 437, 626
Hpy99I CGWCG 4 cut(s) 121, 155, 223, 411
HpyAV CCTTC 3 cut(s) 29, 442, 455
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 4 cut(s) 455, 497, 503, 562
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 392, 559
HpyF3I CTNAG 4 cut(s) 132, 170, 288, 305
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 218
LmnI GCTCC 3 cut(s) 38, 117, 604
Lsp1109I GCAGC 4 cut(s) 345, 367, 439, 467
MabI ACCWGGT 1 cut(s) 597
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 331, 723
MboII GAAGA 4 cut(s) 30, 40, 276, 629
MluCI AATT 5 cut(s) 192, 401, 474, 531, 611
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 6 cut(s) 157, 165, 196, 312, 397, 723
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 4 cut(s) 252, 297, 432, 644
MspA1I CMGCKG 2 cut(s) 358, 458
MspI CCGG 4 cut(s) 27, 88, 98, 670
MspR9I CCNGG 6 cut(s) 28, 53, 88, 98, 599, 670
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 2 cut(s) 53, 599
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 181, 392, 559
NciI CCSGG 4 cut(s) 28, 88, 98, 670
NlaIV GGNNCC 7 cut(s) 40, 343, 419, 520, 606, 639, 745
NmuCI GTSAC 2 cut(s) 331, 723
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 159
PctI GAATGC 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 5 cut(s) 56, 140, 260, 365, 622
PflMI CCANNNNNTGG 1 cut(s) 351
PfoI TCCNGGA 3 cut(s) 51, 86, 668
PkrI GCNGC 7 cut(s) 124, 127, 327, 357, 360, 454, 457
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 432
PsiI TTATAA 1 cut(s) 719
Psp6I CCWGG 2 cut(s) 51, 597
PspGI CCWGG 2 cut(s) 51, 597
PspN4I GGNNCC 7 cut(s) 40, 343, 419, 520, 606, 639, 745
PspPI GGNCC 4 cut(s) 73, 95, 100, 341
PstI CTGCAG 1 cut(s) 457
PvuII CAGCTG 2 cut(s) 358, 458
SaqAI TTAA 4 cut(s) 252, 297, 432, 644
SatI GCNGC 7 cut(s) 123, 126, 326, 356, 359, 453, 456
Sau96I GGNCC 4 cut(s) 73, 95, 100, 341
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 6 cut(s) 28, 53, 88, 98, 599, 670
SexAI ACCWGGT 1 cut(s) 597
SfcI CTRYAG 2 cut(s) 453, 554
Sse9I AATT 5 cut(s) 192, 401, 474, 531, 611
SsiI CCGC 4 cut(s) 14, 122, 125, 326
StyD4I CCNGG 6 cut(s) 26, 51, 86, 96, 597, 668
StyI CCWWGG 1 cut(s) 525
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 377
TasI AATT 5 cut(s) 192, 401, 474, 531, 611
TauI GCSGC 3 cut(s) 125, 128, 328
TfiI GAWTC 5 cut(s) 56, 140, 260, 365, 622
Tru1I TTAA 4 cut(s) 252, 297, 432, 644
Tru9I TTAA 4 cut(s) 252, 297, 432, 644
TseFI GTSAC 2 cut(s) 331, 723
TseI GCWGC 4 cut(s) 355, 358, 452, 455
Tsp45I GTSAC 2 cut(s) 331, 723
TspDTI ATGAA 1 cut(s) 414
Van91I CCANNNNNTGG 1 cut(s) 351
VspI ATTAAT 1 cut(s) 432
XagI CCTNNNNNAGG 1 cut(s) 326
XapI RAATTY 2 cut(s) 192, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.