FvH4_6g42620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015069
Physical Location & Seq
Reverse (-)
33167389 .. 33170432
3044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42620.t1

Sequence Viewer

Length: 753 bp
ATGAGTTTTCTCGCGGGAAGATTAGCCGGGAAAGAAGGAGCCTACTTCTTCCAGGAATCCAAACAGGCCGTTGGCCGTCTCGTATCCCAGAAGAAGCTCCCGTCGTCGCCTCCGTCGGCGACTGAGCACGAATCCCAAGCCGACGTGCTTCCCGAGGTGCTGAGGCACTCTTTGCCCCCCAAAATTTTCCATCAACAGGCTGAAACGGCGTCGTCTCTGGACACAGCTTCCAAATGGGTTCTTAAATCTGAGTCCAAGAATGGGTATTTCATCTCTTCTCAGGCTCTTAACCCTCTCAGGGATTTTGTGTCCCTGCCCCAGGTCACTTTTGGCCCCAAAAGGTGGCAACTGCCGGAATCAGAAAACTCGATTTCAGCCTCAACAGCTAATGAATTGCGTCGAGACAGGCACCCTACCCCCATTAATCCTGAAAAGTTGAAGGCTGCAGCTGAAGGGCTTACGCGAATTGGGGCAGCATTCGCTATTGCAACTGCAATAGTTTTTGGTGGTGCCACCTTGGTATTTGGATTGGCTGTCTCAAGGCTACAGGTGCAGAATAGTGATGACATCCGAACAAAAGGGAAAGAACTGGTGGAGCCAAAATTTGAAGGGATTCGTGAGCAGCTGGTTCCCTTAAAGGCTTGGGTTGAAAACATGACAAGGAAATGGCACCTGGAAAAGCAGGAAGATGTAAAGGAGAAGCCTCTTGTAAAGGCGCTCTCTAAAATGTTTGCTGCAAAGACATCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.63

Weight (kDa)

9.61

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05060
fragaria_vesca FvH4_6g42620
malus_domestica MD06G1049400.v1.1 MD17G1102200.v1.1
prunus_persica Prupe.3G212700_v2.0.a1
pyrus_communis pycom17g09680
rosa_chinensis RchiOBHm_Chr2g0158471
rosa_laevigata RLG00000021091
rosa_multiflora Rmu_sc0004855.1_g000002
rosa_roxburghii Rroxscaffold_2G00091340
rosa_rugosa Rorug02G0469700
rosa_samantha Rh2AG535200 Rh2BG548600 Rh2CG519000 Rh2DG558200
rosa_wichuraiana Rw2G044330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 408, 509, 669
AccB7I CCANNNNNTGG 1 cut(s) 342
AccII CGCG 2 cut(s) 14, 463
AciI CCGC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 2 cut(s) 183, 602
AcuI CTGAAG 1 cut(s) 471
AcyI GRCGYC 1 cut(s) 209
AfiI CCNNNNNNNGG 5 cut(s) 196, 261, 298, 319, 342
AgsI TTSAA 3 cut(s) 439, 608, 650
AjiI CACGTC 1 cut(s) 145
AjnI CCWGG 3 cut(s) 51, 318, 672
AluBI AGCT 5 cut(s) 97, 227, 386, 449, 625
AluI AGCT 5 cut(s) 97, 227, 386, 449, 625
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 4 cut(s) 83, 219, 396, 541
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 3 cut(s) 66, 73, 331
ApeKI GCWGC 5 cut(s) 443, 446, 473, 622, 734
ApoI RAATTY 2 cut(s) 183, 602
AseI ATTAAT 1 cut(s) 423
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 1 cut(s) 332
AsuC2I CCSGG 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 152
BanI GGYRCC 3 cut(s) 408, 509, 669
Bbv12I GWGCWC 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 161
BbvI GCAGC 5 cut(s) 430, 458, 485, 634, 721
BccI CCATC 1 cut(s) 198
BceAI ACGGC 3 cut(s) 53, 60, 222
BciT130I CCWGG 3 cut(s) 53, 320, 674
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 83, 219, 396, 541
BfmI CTRYAG 2 cut(s) 444, 545
BfoI RGCGCY 1 cut(s) 719
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 5 cut(s) 444, 447, 474, 623, 735
BlsI GCNGC 5 cut(s) 445, 448, 475, 624, 736
Bme1390I CCNGG 4 cut(s) 28, 53, 320, 674
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 7 cut(s) 40, 334, 410, 511, 597, 630, 671
BmrFI CCNGG 4 cut(s) 28, 53, 320, 674
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 209
BsaJI CCNNGG 3 cut(s) 153, 318, 516
Bsc4I CCNNNNNNNGG 5 cut(s) 196, 261, 298, 319, 342
Bse1I ACTGG 1 cut(s) 594
BseBI CCWGG 3 cut(s) 53, 320, 674
BseDI CCNNGG 3 cut(s) 153, 318, 516
BseGI GGATG 2 cut(s) 567, 743
BseLI CCNNNNNNNGG 5 cut(s) 196, 261, 298, 319, 342
BseMII CTCAG 5 cut(s) 114, 152, 240, 293, 310
BseNI ACTGG 1 cut(s) 594
BseXI GCAGC 5 cut(s) 430, 458, 485, 634, 721
BsgI GTGCAG 1 cut(s) 572
Bsh1236I CGCG 2 cut(s) 14, 463
BshFI GGCC 3 cut(s) 68, 75, 333
BshNI GGYRCC 3 cut(s) 408, 509, 669
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 27, 353
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 5 cut(s) 196, 261, 298, 319, 342
BsmAI GTCTC 4 cut(s) 83, 219, 396, 541
BsmBI CGTCTC 2 cut(s) 83, 219
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 3 cut(s) 68, 75, 333
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 129
BspACI CCGC 1 cut(s) 14
BspANI GGCC 3 cut(s) 68, 75, 333
BspCNI CTCAG 5 cut(s) 115, 153, 241, 292, 309
BspFNI CGCG 2 cut(s) 14, 463
BspLI GGNNCC 7 cut(s) 40, 334, 410, 511, 597, 630, 671
BspMAI CTGCAG 1 cut(s) 448
BspT107I GGYRCC 3 cut(s) 408, 509, 669
BsrI ACTGG 1 cut(s) 594
BssECI CCNNGG 3 cut(s) 153, 318, 516
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 3 cut(s) 53, 320, 674
Bst6I CTCTTC 1 cut(s) 280
BstACI GRCGYC 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 172
BstDEI CTNAG 5 cut(s) 123, 161, 249, 279, 296
BstENI CCTNNNNNAGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 567, 743
BstFNI CGCG 2 cut(s) 14, 463
BstH2I RGCGCY 1 cut(s) 719
BstHHI GCGC 1 cut(s) 718
BstMAI GTCTC 4 cut(s) 83, 219, 396, 541
BstMWI GCNNNNNNNGC 5 cut(s) 172, 206, 383, 479, 550
BstNI CCWGG 3 cut(s) 53, 320, 674
BstSCI CCNGG 4 cut(s) 26, 51, 318, 672
BstSFI CTRYAG 2 cut(s) 444, 545
BstUI CGCG 2 cut(s) 14, 463
BstV1I GCAGC 5 cut(s) 430, 458, 485, 634, 721
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 3 cut(s) 68, 75, 333
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 567, 743
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 1 cut(s) 332
CseI GACGC 2 cut(s) 198, 386
CviAII CATG 1 cut(s) 655
DdeI CTNAG 5 cut(s) 123, 161, 249, 279, 296
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 317
EcoRII CCWGG 3 cut(s) 51, 318, 672
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
Esp3I CGTCTC 2 cut(s) 83, 219
FaeI CATG 1 cut(s) 658
FaiI YATR 1 cut(s) 656
FaqI GGGAC 1 cut(s) 295
FatI CATG 1 cut(s) 654
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 5 cut(s) 444, 447, 474, 623, 735
FokI GGATG 2 cut(s) 554, 730
Fsp4HI GCNGC 5 cut(s) 444, 447, 474, 623, 735
GlaI GCGC 1 cut(s) 717
GluI GCNGC 5 cut(s) 444, 447, 474, 623, 735
HaeII RGCGCY 1 cut(s) 719
HaeIII GGCC 3 cut(s) 68, 75, 333
HapII CCGG 2 cut(s) 27, 353
HgaI GACGC 2 cut(s) 198, 386
HhaI GCGC 1 cut(s) 718
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 1 cut(s) 658
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HinfI GANTC 5 cut(s) 56, 131, 251, 356, 613
HpaII CCGG 2 cut(s) 27, 353
Hpy188I TCNGA 3 cut(s) 250, 361, 572
Hpy188III TCNNGA 5 cut(s) 152, 218, 401, 428, 617
Hpy99I CGWCG 6 cut(s) 106, 109, 118, 146, 214, 402
HpyAV CCTTC 4 cut(s) 29, 433, 446, 602
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 5 cut(s) 446, 488, 494, 553, 737
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 206, 383, 479, 550
HpyF3I CTNAG 5 cut(s) 123, 161, 249, 279, 296
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 658
HspAI GCGC 1 cut(s) 716
LmnI GCTCC 3 cut(s) 38, 102, 595
Lsp1109I GCAGC 5 cut(s) 430, 458, 485, 634, 721
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 322
MboII GAAGA 5 cut(s) 30, 40, 103, 267, 698
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 4 cut(s) 183, 392, 465, 602
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 6 cut(s) 120, 148, 156, 303, 388, 714
MroXI GAANNNNTTC 1 cut(s) 612
MseI TTAA 4 cut(s) 243, 288, 423, 635
MspA1I CMGCKG 2 cut(s) 449, 625
MspI CCGG 2 cut(s) 27, 353
MspR9I CCNGG 4 cut(s) 28, 53, 320, 674
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 3 cut(s) 53, 320, 674
MvnI CGCG 2 cut(s) 14, 463
MwoI GCNNNNNNNGC 5 cut(s) 172, 206, 383, 479, 550
NciI CCSGG 1 cut(s) 28
NlaIII CATG 1 cut(s) 658
NlaIV GGNNCC 7 cut(s) 40, 334, 410, 511, 597, 630, 671
NmuCI GTSAC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 2 cut(s) 110, 150
PctI GAATGC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 4 cut(s) 56, 131, 356, 613
PflMI CCANNNNNTGG 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 5 cut(s) 445, 448, 475, 624, 736
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 423
Psp6I CCWGG 3 cut(s) 51, 318, 672
PspGI CCWGG 3 cut(s) 51, 318, 672
PspN4I GGNNCC 7 cut(s) 40, 334, 410, 511, 597, 630, 671
PspPI GGNCC 1 cut(s) 332
PstI CTGCAG 1 cut(s) 448
PvuII CAGCTG 2 cut(s) 449, 625
SaqAI TTAA 4 cut(s) 243, 288, 423, 635
SatI GCNGC 5 cut(s) 444, 447, 474, 623, 735
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 4 cut(s) 28, 53, 320, 674
SduI GDGCHC 1 cut(s) 129
SfcI CTRYAG 2 cut(s) 444, 545
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 4 cut(s) 183, 392, 465, 602
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 4 cut(s) 26, 51, 318, 672
StyI CCWWGG 1 cut(s) 516
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 368, 400
TasI AATT 4 cut(s) 183, 392, 465, 602
TfiI GAWTC 4 cut(s) 56, 131, 356, 613
Tru1I TTAA 4 cut(s) 243, 288, 423, 635
Tru9I TTAA 4 cut(s) 243, 288, 423, 635
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 5 cut(s) 443, 446, 473, 622, 734
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 259, 405
TspGWI ACGGA 1 cut(s) 102
Van91I CCANNNNNTGG 1 cut(s) 342
VspI ATTAAT 1 cut(s) 423
XagI CCTNNNNNAGG 1 cut(s) 317
XapI RAATTY 2 cut(s) 183, 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.