Rh2CG519000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015069
Physical Location & Seq
Reverse (-)
69348096 .. 69350987
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG519000.1

Sequence Viewer

Length: 537 bp
ATGAGTTTTCTCGCGGGAAGATTAGCCGGGAAAGAAGGAGCCTACTTCTTCCAGGAATCCAAACAGGCCGTGGGCCGTCTCGTATCCCGGAAAGGCGTGGCCCACAAGAAGCTCCCGTCGGCGGCGACTGAGCAGGAATCCCAAGCCGACGTGCTTCCCGAGGTGCTGAGGCACTCTCTGCCCTCCAGAATTTACCATCAACAGCCCGAAATGGCGTCGTCTCTGGACACAGCTTCCAAATGGGTTCTTAAATCTGATTCCAAAAACCCATTTTCCATCTCTTCTCAGACTCTTAACCCTCTTAGGGATTATGTGTCCCTGCCGCAGGTCACTTTTGGCCCCAAAAGGTGGCAGCTGCCTGAATCAGAAAACTCGATGTCGGCCTCAACGGCTAATGAATTGCGACGAGACAGGCACCCCACCCCCATTAATCCTGAAAAGTTTAAGGCTGCAGCTGAAGGGCTTACACGAAGTAGGTCCAATGAATCTCTCCATTCTTTCAATTTATTTGATATGGTTCAGAAAGCTTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.94

Weight (kDa)

9.58

Isoelectric Point (pI)

68.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05060
fragaria_vesca FvH4_6g42620
malus_domestica MD06G1049400.v1.1 MD17G1102200.v1.1
prunus_persica Prupe.3G212700_v2.0.a1
pyrus_communis pycom17g09680
rosa_chinensis RchiOBHm_Chr2g0158471
rosa_laevigata RLG00000021091
rosa_multiflora Rmu_sc0004855.1_g000002
rosa_roxburghii Rroxscaffold_2G00091340
rosa_rugosa Rorug02G0469700
rosa_samantha Rh2AG535200 Rh2BG548600 Rh2CG519000 Rh2DG558200
rosa_wichuraiana Rw2G044330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 348
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 14, 122, 323
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 121, 304, 325, 348
AgsI TTSAA 1 cut(s) 502
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 5 cut(s) 112, 233, 355, 455, 527
AluI AGCT 5 cut(s) 112, 233, 355, 455, 527
Alw26I GTCTC 3 cut(s) 83, 225, 402
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 5 cut(s) 66, 73, 99, 337, 381
ApeKI GCWGC 4 cut(s) 352, 355, 449, 452
ApoI RAATTY 1 cut(s) 189
AseI ATTAAT 1 cut(s) 429
AspS9I GGNCC 4 cut(s) 73, 100, 338, 477
AsuC2I CCSGG 2 cut(s) 28, 88
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 342, 364, 436, 464
BccI CCATC 2 cut(s) 204, 284
BceAI ACGGC 3 cut(s) 53, 60, 405
BciT130I CCWGG 1 cut(s) 53
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 2 cut(s) 28, 88
BcoDI GTCTC 3 cut(s) 83, 225, 402
BfmI CTRYAG 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
BlsI GCNGC 6 cut(s) 124, 324, 354, 357, 451, 454
Bme1390I CCNGG 3 cut(s) 28, 53, 88
Bme18I GGWCC 1 cut(s) 477
BmeT110I CYCGRG 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 73, 100, 338, 477
BmiI GGNNCC 3 cut(s) 40, 340, 416
BmrFI CCNGG 3 cut(s) 28, 53, 88
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BpmI CTGGAG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 28, 88
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 69, 159
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 304, 325, 348
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 69, 159
BseLI CCNNNNNNNGG 4 cut(s) 121, 304, 325, 348
BseMII CTCAG 3 cut(s) 120, 158, 299
BseXI GCAGC 4 cut(s) 342, 364, 436, 464
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 5 cut(s) 68, 75, 101, 339, 383
BshNI GGYRCC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 27, 88
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 4 cut(s) 121, 304, 325, 348
BsmAI GTCTC 3 cut(s) 83, 225, 402
BsmBI CGTCTC 2 cut(s) 83, 225
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 5 cut(s) 68, 75, 101, 339, 383
BsoBI CYCGRG 1 cut(s) 158
BspACI CCGC 3 cut(s) 14, 122, 323
BspANI GGCC 5 cut(s) 68, 75, 101, 339, 383
BspCNI CTCAG 3 cut(s) 121, 159, 298
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 3 cut(s) 40, 340, 416
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 69, 159
BssNI GRCGYC 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 178
BstDEI CTNAG 4 cut(s) 129, 167, 285, 302
BstDSI CCRYGG 1 cut(s) 69
BstENI CCTNNNNNAGG 1 cut(s) 323
BstFNI CGCG 1 cut(s) 14
BstMAI GTCTC 3 cut(s) 83, 225, 402
BstMWI GCNNNNNNNGC 2 cut(s) 178, 389
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 3 cut(s) 26, 51, 86
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 4 cut(s) 342, 364, 436, 464
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 5 cut(s) 68, 75, 101, 339, 383
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 151
BveI ACCTGC 1 cut(s) 316
Cfr13I GGNCC 4 cut(s) 73, 100, 338, 477
CseI GACGC 1 cut(s) 204
DdeI CTNAG 4 cut(s) 129, 167, 285, 302
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 51
Esp3I CGTCTC 2 cut(s) 83, 225
FaiI YATR 2 cut(s) 312, 515
FaqI GGGAC 1 cut(s) 301
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
Fsp4HI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
GluI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 5 cut(s) 68, 75, 101, 339, 383
HapII CCGG 2 cut(s) 27, 88
HgaI GACGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 215
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 6 cut(s) 56, 137, 257, 289, 362, 485
HpaII CCGG 2 cut(s) 27, 88
Hpy188I TCNGA 4 cut(s) 256, 288, 367, 522
Hpy188III TCNNGA 4 cut(s) 158, 186, 224, 434
Hpy99I CGWCG 4 cut(s) 121, 152, 220, 408
HpyAV CCTTC 2 cut(s) 29, 452
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 389
HpyF3I CTNAG 4 cut(s) 129, 167, 285, 302
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 215
LmnI GCTCC 2 cut(s) 38, 117
Lsp1109I GCAGC 4 cut(s) 342, 364, 436, 464
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 3 cut(s) 30, 40, 273
MluCI AATT 3 cut(s) 189, 398, 502
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 5 cut(s) 154, 162, 193, 309, 394
MseI TTAA 4 cut(s) 249, 294, 429, 444
MspA1I CMGCKG 2 cut(s) 355, 455
MspI CCGG 2 cut(s) 27, 88
MspR9I CCNGG 3 cut(s) 28, 53, 88
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 178, 389
NciI CCSGG 2 cut(s) 28, 88
NlaIV GGNNCC 3 cut(s) 40, 340, 416
NmuCI GTSAC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 5 cut(s) 56, 137, 257, 362, 485
PflMI CCANNNNNTGG 1 cut(s) 348
PfoI TCCNGGA 2 cut(s) 51, 86
PkrI GCNGC 6 cut(s) 124, 324, 354, 357, 451, 454
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 40, 340, 416
PspPI GGNCC 4 cut(s) 73, 100, 338, 477
PstI CTGCAG 1 cut(s) 454
PvuII CAGCTG 2 cut(s) 355, 455
SaqAI TTAA 4 cut(s) 249, 294, 429, 444
SatI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
Sau96I GGNCC 4 cut(s) 73, 100, 338, 477
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 3 cut(s) 28, 53, 88
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 1 cut(s) 477
Sse9I AATT 3 cut(s) 189, 398, 502
SsiI CCGC 3 cut(s) 14, 122, 323
StyD4I CCNGG 3 cut(s) 26, 51, 86
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 374
TasI AATT 3 cut(s) 189, 398, 502
TauI GCSGC 2 cut(s) 125, 325
TfiI GAWTC 5 cut(s) 56, 137, 257, 362, 485
Tru1I TTAA 4 cut(s) 249, 294, 429, 444
Tru9I TTAA 4 cut(s) 249, 294, 429, 444
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 4 cut(s) 352, 355, 449, 452
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 411, 498
Van91I CCANNNNNTGG 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 477
VspI ATTAAT 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.