MD06G1049400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015069
Physical Location & Seq
Forward (+)
6739549 .. 6740056
508 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1049400.v1.1.491

Sequence Viewer

Length: 453 bp
ATGAGTTTTCTCGCGAGAAGACTAGCCAAGAAAAATGGAGCCTATTTTCTCCAAGAATCAAAACAGGAAGTGGGCTGTCTCGTATCCCAGAAGAAAAAGCTCCCATCATTGCCGTCCAAAGCTTCCTCCACCACGACAGAGCACGAATTGCAAGCTGATATGCTTCTGGAAGTCTTGAGGCACTCTCTGCCCTCGAAGATCTTCCACCAATCTTCTGAAACAACGTCGTCTTTGGACATGACCTCCAAATGGGTTCTTGAATCCAATTCCAAGAACGGCCATTTCTTGTCCGCCGAGGCTCTTAACCCTATGAGGGTTTACTTGTTGCTGCCCCAGGTCACTTTTGGCCCCAAAAGGAAAATATGGGAAATTGAAGATTCTTGGACTTGTTTGGTGGATTTGGCTTTGTGGGTTTGTTACAGAATGCTCAAAATTTGTTTAATTTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.13

Weight (kDa)

9.1

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05060
fragaria_vesca FvH4_6g42620
malus_domestica MD06G1049400.v1.1 MD17G1102200.v1.1
prunus_persica Prupe.3G212700_v2.0.a1
pyrus_communis pycom17g09680
rosa_chinensis RchiOBHm_Chr2g0158471
rosa_laevigata RLG00000021091
rosa_multiflora Rmu_sc0004855.1_g000002
rosa_roxburghii Rroxscaffold_2G00091340
rosa_rugosa Rorug02G0469700
rosa_samantha Rh2AG535200 Rh2BG548600 Rh2CG519000 Rh2DG558200
rosa_wichuraiana Rw2G044330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 249, 313
AgsI TTSAA 2 cut(s) 260, 374
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 3 cut(s) 100, 122, 155
AluI AGCT 3 cut(s) 100, 122, 155
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 83
AoxI GGCC 2 cut(s) 277, 346
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 315
BccI CCATC 1 cut(s) 112
BceAI ACGGC 2 cut(s) 97, 292
BciT130I CCWGG 1 cut(s) 335
BciVI GTATCC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 23
BfuI GTATCC 1 cut(s) 94
BglII AGATCT 1 cut(s) 198
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 40, 349
BmrFI CCNGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BpuEI CTTGAG 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 294, 333
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 313
Bse3DI GCAATG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 294, 333
BseLI CCNNNNNNNGG 2 cut(s) 249, 313
BseMI GCAATG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 279, 348
BsiHKAI GWGCWC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 249, 313
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 2 cut(s) 279, 348
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 198
Bsp68I TCGCGA 1 cut(s) 14
BspACI CCGC 1 cut(s) 291
BspANI GGCC 2 cut(s) 279, 348
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 40, 349
BsrDI GCAATG 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 294, 333
BssMI GATC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 335
BstAPI GCANNNNNTGC 2 cut(s) 148, 187
BstC8I GCNNGC 1 cut(s) 153
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 148, 187
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 333
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 279, 348
BtuMI TCGCGA 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 347
CviAII CATG 1 cut(s) 238
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 277
EciI GGCGGA 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 241
FaiI YATR 5 cut(s) 161, 239, 311, 364, 451
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 1 cut(s) 23
GluI GCNGC 1 cut(s) 329
HaeIII GGCC 2 cut(s) 279, 348
Hin1II CATG 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 3 cut(s) 56, 260, 377
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 4 cut(s) 13, 167, 175, 257
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 187
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 38, 105
LpnPI CCDG 5 cut(s) 50, 101, 152, 320, 347
Lsp1109I GCAGC 1 cut(s) 315
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 2 cut(s) 337, 416
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 6 cut(s) 30, 103, 193, 204, 208, 386
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 5 cut(s) 146, 265, 369, 432, 441
MnlI CCTC 6 cut(s) 136, 171, 202, 253, 289, 306
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 303, 440
MspR9I CCNGG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 148, 187
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 2 cut(s) 40, 349
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 337
NruI TCGCGA 1 cut(s) 14
PctI GAATGC 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 3 cut(s) 56, 260, 377
PkrI GCNGC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 40, 349
PspPI GGNCC 1 cut(s) 347
PsuI RGATCY 1 cut(s) 198
RruI TCGCGA 1 cut(s) 14
SaqAI TTAA 2 cut(s) 303, 440
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 144
SetI ASST 6 cut(s) 102, 124, 157, 227, 245, 339
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 5 cut(s) 146, 265, 369, 432, 441
SsiI CCGC 1 cut(s) 291
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 333
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 194
TasI AATT 5 cut(s) 146, 265, 369, 432, 441
TfiI GAWTC 3 cut(s) 56, 260, 377
Tru1I TTAA 2 cut(s) 303, 440
Tru9I TTAA 2 cut(s) 303, 440
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 337
XapI RAATTY 1 cut(s) 432
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.