Rh2AG535200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015069
Physical Location & Seq
Reverse (-)
76379508 .. 76382108
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG535200.1

Sequence Viewer

Length: 765 bp
ATGAGTTTTCTCGCGGGAAGATTAGCCGGGAAAGAAGGAGCCTACTTCTTCCAGGAATCCAAACAGGCCGTGGGCCGTCTCGTATCCCGGAAAGGCGTGGCCCACAAGAAGCTCCCGTCGGCGGCGACTGAGCAGGAATCCCAAGCCGACGTGCTTCCCGAGGTGCTGAGGCACTCTCTGCCCTCCAGAATTTACCATCAACAGCCCGAAATGGCGTCGTCTCTGGACACAGCTTCCAAATGGGTTCTTAAATCTGATTCCAAAAACCCATTTTCCATCTCTTCTCAGACTCTTAACCCTCTTAGGGATTATGTGTCCCTGCCGCAGGTCACTTTTGGCCCCAAAAGGTGGCAGCTGCCTGAATCAGAAAACTCGATGTCGGCCTCAACGGCTAATGAATTGCGACGAGACAGGCACCCCACCCCCATTAATCCTGAAAAGTTTAAGGCTGCAGCTGAAGGGCTTACACGAATTGGAGTGGCATTCGCTATTGCAACTGCAATAGTTTTTGGTGGTGCCACCTTGGTAATTGGAATGGCTGTCTCAAAGCTACAGGTGCAGAATAGTGATGACATCCGAACAAAAGGGAAAGACCTGGTGGAGCCAAAATTTGAAGAGATACGTGAGCAACTGGTCCCCTTAAAGGCTTGGGTTGAAAATATGTCCAGGAAATGGCACTTGGAAAAGGGGGAAGATGTAAAGGAGAAGCCTCTTATAAAGTCACTTTCTAAAATGTTAGGTGCCAAGACATCCAACAGACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.21

Weight (kDa)

9.72

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05060
fragaria_vesca FvH4_6g42620
malus_domestica MD06G1049400.v1.1 MD17G1102200.v1.1
prunus_persica Prupe.3G212700_v2.0.a1
pyrus_communis pycom17g09680
rosa_chinensis RchiOBHm_Chr2g0158471
rosa_laevigata RLG00000021091
rosa_multiflora Rmu_sc0004855.1_g000002
rosa_roxburghii Rroxscaffold_2G00091340
rosa_rugosa Rorug02G0469700
rosa_samantha Rh2AG535200 Rh2BG548600 Rh2CG519000 Rh2DG558200
rosa_wichuraiana Rw2G044330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 3 cut(s) 414, 515, 740
AccB7I CCANNNNNTGG 2 cut(s) 348, 672
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 14, 122, 323
AcsI RAATTY 2 cut(s) 189, 608
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 215
AfiI CCNNNNNNNGG 6 cut(s) 121, 304, 325, 348, 643, 672
AgsI TTSAA 2 cut(s) 614, 656
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 3 cut(s) 51, 594, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AluBI AGCT 5 cut(s) 112, 233, 355, 455, 550
AluI AGCT 5 cut(s) 112, 233, 355, 455, 550
Alw26I GTCTC 4 cut(s) 83, 225, 402, 547
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 5 cut(s) 66, 73, 99, 337, 381
ApeKI GCWGC 4 cut(s) 352, 355, 449, 452
ApoI RAATTY 2 cut(s) 189, 608
AseI ATTAAT 1 cut(s) 429
AspS9I GGNCC 4 cut(s) 73, 100, 338, 634
AsuC2I CCSGG 2 cut(s) 28, 88
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 634
BanI GGYRCC 3 cut(s) 414, 515, 740
BbvCI CCTCAGC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 342, 364, 436, 464
BccI CCATC 2 cut(s) 204, 284
BceAI ACGGC 3 cut(s) 53, 60, 405
BciT130I CCWGG 3 cut(s) 53, 596, 667
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 2 cut(s) 28, 88
BcoDI GTCTC 4 cut(s) 83, 225, 402, 547
BfmI CTRYAG 2 cut(s) 450, 551
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
BlsI GCNGC 6 cut(s) 124, 324, 354, 357, 451, 454
Bme1390I CCNGG 5 cut(s) 28, 53, 88, 596, 667
Bme18I GGWCC 1 cut(s) 634
BmeT110I CYCGRG 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 73, 100, 338, 634
BmiI GGNNCC 7 cut(s) 40, 340, 416, 517, 603, 636, 742
BmrFI CCNGG 5 cut(s) 28, 53, 88, 596, 667
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BpmI CTGGAG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 28, 88
BsaAI YACGTR 1 cut(s) 623
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 69, 159, 522
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 304, 325, 348, 643, 672
Bse1I ACTGG 1 cut(s) 636
BseBI CCWGG 3 cut(s) 53, 596, 667
BseDI CCNNGG 3 cut(s) 69, 159, 522
BseGI GGATG 2 cut(s) 573, 749
BseLI CCNNNNNNNGG 6 cut(s) 121, 304, 325, 348, 643, 672
BseMII CTCAG 3 cut(s) 120, 158, 299
BseNI ACTGG 1 cut(s) 636
BseXI GCAGC 4 cut(s) 342, 364, 436, 464
BsgI GTGCAG 1 cut(s) 578
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 5 cut(s) 68, 75, 101, 339, 383
BshNI GGYRCC 3 cut(s) 414, 515, 740
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 27, 88
BslFI GGGAC 2 cut(s) 301, 620
BslI CCNNNNNNNGG 6 cut(s) 121, 304, 325, 348, 643, 672
BsmAI GTCTC 4 cut(s) 83, 225, 402, 547
BsmBI CGTCTC 2 cut(s) 83, 225
BsmFI GGGAC 2 cut(s) 301, 620
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 5 cut(s) 68, 75, 101, 339, 383
BsoBI CYCGRG 1 cut(s) 158
BspACI CCGC 3 cut(s) 14, 122, 323
BspANI GGCC 5 cut(s) 68, 75, 101, 339, 383
BspCNI CTCAG 3 cut(s) 121, 159, 298
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 7 cut(s) 40, 340, 416, 517, 603, 636, 742
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 316
BspT107I GGYRCC 3 cut(s) 414, 515, 740
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 3 cut(s) 69, 159, 522
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 3 cut(s) 53, 596, 667
Bst6I CTCTTC 2 cut(s) 286, 609
BstACI GRCGYC 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 623
BstDEI CTNAG 4 cut(s) 129, 167, 285, 302
BstDSI CCRYGG 1 cut(s) 69
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 573, 749
BstFNI CGCG 1 cut(s) 14
BstMAI GTCTC 4 cut(s) 83, 225, 402, 547
BstMWI GCNNNNNNNGC 3 cut(s) 178, 389, 556
BstNI CCWGG 3 cut(s) 53, 596, 667
BstSCI CCNGG 5 cut(s) 26, 51, 86, 594, 665
BstSFI CTRYAG 2 cut(s) 450, 551
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 4 cut(s) 342, 364, 436, 464
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 5 cut(s) 68, 75, 101, 339, 383
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 573, 749
BveI ACCTGC 1 cut(s) 316
Cfr13I GGNCC 4 cut(s) 73, 100, 338, 634
CseI GACGC 1 cut(s) 204
CsiI ACCWGGT 1 cut(s) 594
DdeI CTNAG 4 cut(s) 129, 167, 285, 302
Eam1104I CTCTTC 2 cut(s) 286, 609
EarI CTCTTC 2 cut(s) 286, 609
Eco130I CCWWGG 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoRII CCWGG 3 cut(s) 51, 594, 665
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
Esp3I CGTCTC 2 cut(s) 83, 225
FaiI YATR 3 cut(s) 312, 662, 716
FaqI GGGAC 2 cut(s) 301, 620
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
FokI GGATG 2 cut(s) 560, 736
Fsp4HI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
GluI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 5 cut(s) 68, 75, 101, 339, 383
HapII CCGG 2 cut(s) 27, 88
HgaI GACGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 215
HinfI GANTC 5 cut(s) 56, 137, 257, 289, 362
HpaII CCGG 2 cut(s) 27, 88
Hpy188I TCNGA 4 cut(s) 256, 288, 367, 578
Hpy188III TCNNGA 4 cut(s) 158, 186, 224, 434
Hpy99I CGWCG 4 cut(s) 121, 152, 220, 408
HpyAV CCTTC 2 cut(s) 29, 452
HpyCH4IV ACGT 2 cut(s) 150, 622
HpyCH4V TGCA 4 cut(s) 452, 494, 500, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 389, 556
HpyF3I CTNAG 4 cut(s) 129, 167, 285, 302
HpySE526I ACGT 2 cut(s) 150, 622
Hsp92I GRCGYC 1 cut(s) 215
LmnI GCTCC 3 cut(s) 38, 117, 601
Lsp1109I GCAGC 4 cut(s) 342, 364, 436, 464
MabI ACCWGGT 1 cut(s) 594
MaeII ACGT 2 cut(s) 150, 622
MaeIII GTNAC 2 cut(s) 328, 720
MboII GAAGA 5 cut(s) 30, 40, 273, 626, 704
MluCI AATT 5 cut(s) 189, 398, 471, 528, 608
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 6 cut(s) 154, 162, 193, 309, 394, 720
MseI TTAA 5 cut(s) 249, 294, 429, 444, 641
MspA1I CMGCKG 2 cut(s) 355, 455
MspI CCGG 2 cut(s) 27, 88
MspR9I CCNGG 5 cut(s) 28, 53, 88, 596, 667
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 3 cut(s) 53, 596, 667
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 178, 389, 556
NciI CCSGG 2 cut(s) 28, 88
NlaIV GGNNCC 7 cut(s) 40, 340, 416, 517, 603, 636, 742
NmuCI GTSAC 2 cut(s) 328, 720
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 1 cut(s) 482
PfeI GAWTC 4 cut(s) 56, 137, 257, 362
PflMI CCANNNNNTGG 2 cut(s) 348, 672
PfoI TCCNGGA 3 cut(s) 51, 86, 665
PkrI GCNGC 6 cut(s) 124, 324, 354, 357, 451, 454
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 623
PshBI ATTAAT 1 cut(s) 429
PsiI TTATAA 1 cut(s) 716
Psp6I CCWGG 3 cut(s) 51, 594, 665
PspGI CCWGG 3 cut(s) 51, 594, 665
PspN4I GGNNCC 7 cut(s) 40, 340, 416, 517, 603, 636, 742
PspPI GGNCC 4 cut(s) 73, 100, 338, 634
PstI CTGCAG 1 cut(s) 454
PvuII CAGCTG 2 cut(s) 355, 455
SaqAI TTAA 5 cut(s) 249, 294, 429, 444, 641
SatI GCNGC 6 cut(s) 123, 323, 353, 356, 450, 453
Sau96I GGNCC 4 cut(s) 73, 100, 338, 634
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 5 cut(s) 28, 53, 88, 596, 667
SexAI ACCWGGT 1 cut(s) 594
SfcI CTRYAG 2 cut(s) 450, 551
SinI GGWCC 1 cut(s) 634
Sse9I AATT 5 cut(s) 189, 398, 471, 528, 608
SsiI CCGC 3 cut(s) 14, 122, 323
StyD4I CCNGG 5 cut(s) 26, 51, 86, 594, 665
StyI CCWWGG 1 cut(s) 522
TaiI ACGT 2 cut(s) 153, 625
TaqI TCGA 1 cut(s) 374
TasI AATT 5 cut(s) 189, 398, 471, 528, 608
TauI GCSGC 2 cut(s) 125, 325
TfiI GAWTC 4 cut(s) 56, 137, 257, 362
Tru1I TTAA 5 cut(s) 249, 294, 429, 444, 641
Tru9I TTAA 5 cut(s) 249, 294, 429, 444, 641
TseFI GTSAC 2 cut(s) 328, 720
TseI GCWGC 4 cut(s) 352, 355, 449, 452
Tsp45I GTSAC 2 cut(s) 328, 720
TspDTI ATGAA 1 cut(s) 411
Van91I CCANNNNNTGG 2 cut(s) 348, 672
VpaK11BI GGWCC 1 cut(s) 634
VspI ATTAAT 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 2 cut(s) 189, 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.