Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010328

Physical Location & Seq

Genomic Coordinates Forward (+)

1482546 .. 1484059

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGCTTTTAAACATTTCTTCTTCTCCAATTTCTCATCGAATTCCTCATTTCCTCTCTGATTTTAACAATCCCACTTCAAATTTCCCTCCGAAATCCAAAACCCATCTCCCAAAATCTAATCTCTCCACTTTATCGAACCATAGCCTCTACGGCACCAAGAACAGAGCTTTCTATAAAAACAAGAGAAACCCTTATAACAGAACACAAGCTCTCGGTCGATTCGATTTCGGAAGTCTCGAATCAGTTCTCGAAGCTTCCGCTGTTCTCACTGCGATCATCGTCGTACACGAGACCGGTCACTTTTTAGCTGCTTCTCTTCAAGGTATCCGTGTGAGTAAATTCGCGATAGGGTTTGGTCCGATTCTAGCTAAATTCAATTCCAACAATGTCGAATACTCTCTTAGGGCCTTTCCATTAGGTGGATTTGTTGGATTCCCTGATAATGATCCCGACAGTGATATCCCTGTAGACGACAGAAATCTTCTCAAGAATCGACCGATTTTGGATAGAGTGATTGTTGTTTCAGCTGGAATTGTCGCTAACGTTATCTTCGCTTACGCTATAATCTTTACTCAAGTGGTATCTGTTGGATTACCAGTTCAAGAATCTTTTCCTGGAGTTCTTGTTCCTGATGTTAAGTCTTTCTCTGCTGCTTCTCGTGATGGATTGCTTCCGGGAGATGTTATCTTAGCCGTTGATGGTACTGAGCTATCTAATTCCGGTTCTGATTCGGTTTCTAAAGTTGTTGATGTTGTGAAGAGGAATCCGGAGCACAATGTCTTGCTCAGGATCGAAAGAGGGAAGGAGAGTTTCGAAATCCGGATCACGCCGGATAAGAGTTTCGATGGAACGGGGAAAATCGGTGTTCAGTTATCACCGAATGTTAGATTCGGTAAGGTGAGACCGAAGAACATACCGGAAACTTTTAGTTTCGCCGGTAGAGAATTCTTTGGGCTCTCTTACAATGTATTGGATAGTTTGAAACAGACTTTCTTGAACTTCTCTCAAACCGCTAGTAAAGTCGCTGGTCCAGTGGCGATTATTGCGGTTGGAGCAGAAGTAGCGAGATCAAACGCGGACGGGCTTTACCAGTTTGCAGCATTGCTGAATCTAAACCTTGCTGTGATCAATCTGTTGCCTTTACCGGCTCTCGATGGTGGAACTTTGGCTCTGATCTTATTGGAAGCGGTTCGAGGCGGGAGGAAATTACCGTTAGAGGTGGAGCAAGGGATTATGTCTTCTGGAATCATGCTTGTATTATTTCTCGGTTTATTTCTCATCGTAAAGGACACACTTAATCTTGATTTCATCAAAGAAATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Peptidase_M50

Protein Analysis

441

Amino Acids

47.77

Weight (kDa)

9.06

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50	PF02163	86 - 422	3e-58	Peptidase family M50
PDZ_2	PF13180	197 - 275	2.8e-07	PDZ domain
PDZ_6	PF17820	209 - 266	5.6e-08	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05140 AT2G32480 AT2G32480
fragaria_vesca	FvH4_6g43160 FvH4_6g43160
malus_domestica	MD09G1110000.v1.1
prunus_persica	Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1
pyrus_communis	pycom09g03250 pycom17g09350
rosa_chinensis	RchiOBHm_Chr2g0159081
rosa_laevigata	RLG00000021136
rosa_multiflora	Rmu_sc0003185.1_g000006
rosa_roxburghii	Rroxscaffold_2G00090800
rosa_rugosa	Rorug02G0473900
rosa_samantha	Rh2AG540700 Rh2BG553400 Rh2CG523800 Rh2DG563300
rosa_wichuraiana	Rw2G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	2 cut(s)	344, 1076
AccIII	TCCGGA	2 cut(s)	766, 819
AciI	CCGC	6 cut(s)	258, 1011, 1046, 1076, 1187, 1197
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	3 cut(s)	440, 797, 830
AcsI	RAATTY	5 cut(s)	39, 79, 338, 371, 944
AfaI	GTAC	2 cut(s)	285, 703
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgeI	ACCGGT	1 cut(s)	293
AgsI	TTSAA	6 cut(s)	78, 320, 376, 602, 982, 997
AjnI	CCWGG	1 cut(s)	613
AloI	GAACNNNNNNTCC	4 cut(s)	582, 609, 614, 641
AluBI	AGCT	7 cut(s)	167, 209, 254, 308, 368, 527, 709
AluI	AGCT	7 cut(s)	167, 209, 254, 308, 368, 527, 709
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	3 cut(s)	239, 284, 895
AlwI	GGATC	3 cut(s)	440, 797, 830
Aor13HI	TCCGGA	2 cut(s)	766, 819
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	308, 650, 1097
ApoI	RAATTY	5 cut(s)	39, 79, 338, 371, 944
AsiGI	ACCGGT	1 cut(s)	293
Asp700I	GAANNNNTTC	3 cut(s)	243, 609, 1188
AspS9I	GGNCC	3 cut(s)	356, 405, 1028
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	2 cut(s)	867, 910
AsuII	TTCGAA	1 cut(s)	813
AvaII	GGWCC	2 cut(s)	356, 1028
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	957
BauI	CACGAG	2 cut(s)	287, 657
BbsI	GAAGAC	1 cut(s)	1230
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	295, 637, 1109
BccI	CCATC	5 cut(s)	111, 656, 692, 839, 1148
BceAI	ACGGC	2 cut(s)	166, 677
BciT130I	CCWGG	1 cut(s)	615
BciVI	GTATCC	1 cut(s)	335
BclI	TGATCA	1 cut(s)	1125
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	3 cut(s)	239, 284, 895
BfaI	CTAG	2 cut(s)	365, 1014
BfmI	CTRYAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	309, 651, 1098
BlsI	GCNGC	3 cut(s)	310, 652, 1099
Bme1390I	CCNGG	2 cut(s)	615, 675
Bme18I	GGWCC	2 cut(s)	356, 1028
BmgT120I	GGNCC	3 cut(s)	356, 405, 1028
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	615, 675
BpiI	GAAGAC	1 cut(s)	1230
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	785
Bpu14I	TTCGAA	1 cut(s)	813
BpuEI	CTTGAG	2 cut(s)	470, 558
BpuMI	CCSGG	1 cut(s)	675
BsaBI	GATNNNNATC	1 cut(s)	444
BsaI	GGTCTC	2 cut(s)	284, 895
BsaWI	WCCGGW	5 cut(s)	293, 719, 766, 819, 916
BsaXI	ACNNNNNCTCC	4 cut(s)	609, 639, 1044, 1074
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse118I	RCCGGY	3 cut(s)	293, 935, 1144
Bse1I	ACTGG	3 cut(s)	596, 1031, 1090
Bse3DI	GCAATG	1 cut(s)	1100
Bse8I	GATNNNNATC	1 cut(s)	444
BseAI	TCCGGA	2 cut(s)	766, 819
BseBI	CCWGG	1 cut(s)	615
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	1100
BseMII	CTCAG	2 cut(s)	696, 799
BseNI	ACTGG	3 cut(s)	596, 1031, 1090
BseXI	GCAGC	3 cut(s)	295, 637, 1109
Bsh1236I	CGCG	2 cut(s)	344, 1076
Bsh1285I	CGRYCG	2 cut(s)	217, 497
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	152
BshTI	ACCGGT	1 cut(s)	293
BsiEI	CGRYCG	2 cut(s)	217, 497
BsiHKAI	GWGCWC	1 cut(s)	774
BsiSI	CCGG	9 cut(s)	294, 674, 720, 767, 820, 830, 917, 936, 1145
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	3 cut(s)	239, 284, 895
BsnI	GGCC	1 cut(s)	407
Bso31I	GGTCTC	2 cut(s)	284, 895
Bsp119I	TTCGAA	1 cut(s)	813
Bsp1286I	GDGCHC	2 cut(s)	774, 957
Bsp13I	TCCGGA	2 cut(s)	766, 819
Bsp143I	GATC	7 cut(s)	273, 445, 789, 822, 1067, 1125, 1173
Bsp68I	TCGCGA	1 cut(s)	344
BspACI	CCGC	6 cut(s)	258, 1011, 1046, 1076, 1187, 1197
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	2 cut(s)	697, 798
BspEI	TCCGGA	2 cut(s)	766, 819
BspFNI	CGCG	2 cut(s)	344, 1076
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	3 cut(s)	440, 797, 830
BspT104I	TTCGAA	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	152
BspTNI	GGTCTC	2 cut(s)	284, 895
BsrDI	GCAATG	1 cut(s)	1100
BsrFI	RCCGGY	3 cut(s)	293, 935, 1144
BsrI	ACTGG	3 cut(s)	596, 1031, 1090
BssAI	RCCGGY	3 cut(s)	293, 935, 1144
BssMI	GATC	7 cut(s)	273, 445, 789, 822, 1067, 1125, 1173
BssSI	CACGAG	2 cut(s)	287, 657
Bst2BI	CACGAG	2 cut(s)	287, 657
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	455, 1212
Bst6I	CTCTTC	2 cut(s)	321, 752
BstBI	TTCGAA	1 cut(s)	813
BstDEI	CTNAG	4 cut(s)	401, 688, 705, 785
BstFNI	CGCG	2 cut(s)	344, 1076
BstKTI	GATC	7 cut(s)	276, 448, 792, 825, 1070, 1128, 1176
BstMAI	GTCTC	3 cut(s)	239, 284, 895
BstMBI	GATC	7 cut(s)	273, 445, 789, 822, 1067, 1125, 1173
BstMCI	CGRYCG	2 cut(s)	217, 497
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 1043, 1052, 1061
BstNI	CCWGG	1 cut(s)	615
BstSCI	CCNGG	2 cut(s)	613, 673
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	2 cut(s)	344, 1076
BstV1I	GCAGC	3 cut(s)	295, 637, 1109
BstV2I	GAAGAC	1 cut(s)	1230
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	407
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	267, 460, 1038
BtuMI	TCGCGA	1 cut(s)	344
Cfr10I	RCCGGY	3 cut(s)	293, 935, 1144
Cfr13I	GGNCC	3 cut(s)	356, 405, 1028
Csp6I	GTAC	2 cut(s)	284, 702
CspAI	ACCGGT	1 cut(s)	293
CviAII	CATG	1 cut(s)	1249
CviQI	GTAC	2 cut(s)	284, 702
DdeI	CTNAG	4 cut(s)	401, 688, 705, 785
DpnI	GATC	7 cut(s)	275, 447, 791, 824, 1069, 1127, 1175
DpnII	GATC	7 cut(s)	273, 445, 789, 822, 1067, 1125, 1173
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	321, 752
EarI	CTCTTC	2 cut(s)	321, 752
Eco24I	GRGCYC	1 cut(s)	957
Eco31I	GGTCTC	2 cut(s)	284, 895
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	356, 1028
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	2 cut(s)	39, 944
EcoRII	CCWGG	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	957
FaeI	CATG	1 cut(s)	1252
FaiI	YATR	7 cut(s)	141, 174, 195, 563, 914, 1235, 1250
FatI	CATG	1 cut(s)	1248
FauI	CCCGC	1 cut(s)	1190
FbaI	TGATCA	1 cut(s)	1125
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	309, 651, 1098
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	3 cut(s)	309, 651, 1098
FspBI	CTAG	2 cut(s)	365, 1014
GluI	GCNGC	3 cut(s)	309, 651, 1098
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	9 cut(s)	294, 674, 720, 767, 820, 830, 917, 936, 1145
Hin1II	CATG	1 cut(s)	1252
HindIII	AAGCTT	1 cut(s)	252
HpaII	CCGG	9 cut(s)	294, 674, 720, 767, 820, 830, 917, 936, 1145
HphI	GGTGA	2 cut(s)	867, 910
Hpy166II	GTNNAC	2 cut(s)	286, 469
Hpy188I	TCNGA	6 cut(s)	58, 90, 230, 360, 727, 1173
Hpy8I	GTNNAC	2 cut(s)	286, 469
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	796
HpyCH4III	ACNGT	2 cut(s)	455, 1212
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	1 cut(s)	1097
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 1043, 1052, 1061
HpyF3I	CTNAG	4 cut(s)	401, 688, 705, 785
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	1 cut(s)	1252
Kpn2I	TCCGGA	2 cut(s)	766, 819
Ksp22I	TGATCA	1 cut(s)	1125
Kzo9I	GATC	7 cut(s)	273, 445, 789, 822, 1067, 1125, 1173
LmnI	GCTCC	3 cut(s)	769, 1052, 1222
Lsp1109I	GCAGC	3 cut(s)	295, 637, 1109
MaeI	CTAG	2 cut(s)	365, 1014
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	7 cut(s)	275, 447, 791, 824, 1069, 1127, 1175
MboI	GATC	7 cut(s)	273, 445, 789, 822, 1067, 1125, 1173
MboII	GAAGA	8 cut(s)	9, 12, 308, 473, 541, 769, 919, 1230
MhlI	GDGCHC	2 cut(s)	774, 957
MmeI	TCCRAC	4 cut(s)	405, 409, 568, 1030
MnlI	CCTC	9 cut(s)	54, 62, 96, 155, 753, 791, 1187, 1194, 1210
MroI	TCCGGA	2 cut(s)	766, 819
MroXI	GAANNNNTTC	3 cut(s)	243, 609, 1188
MseI	TTAA	4 cut(s)	8, 63, 636, 1296
MspA1I	CMGCKG	2 cut(s)	260, 527
MspI	CCGG	9 cut(s)	294, 674, 720, 767, 820, 830, 917, 936, 1145
MspR9I	CCNGG	2 cut(s)	615, 675
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	2 cut(s)	344, 1076
MwoI	GCNNNNNNNGC	4 cut(s)	150, 1043, 1052, 1061
NciI	CCSGG	1 cut(s)	675
NdeII	GATC	7 cut(s)	273, 445, 789, 822, 1067, 1125, 1173
NlaIII	CATG	1 cut(s)	1252
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	296
NruI	TCGCGA	1 cut(s)	344
NspV	TTCGAA	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 234, 285
PdmI	GAANNNNTTC	3 cut(s)	243, 609, 1188
PflMI	CCANNNNNTGG	1 cut(s)	419
PfoI	TCCNGGA	2 cut(s)	613, 673
PinAI	ACCGGT	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	310, 652, 1099
PsiI	TTATAA	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	543
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	3 cut(s)	356, 405, 1028
PvuII	CAGCTG	1 cut(s)	527
RruI	TCGCGA	1 cut(s)	344
RsaI	GTAC	2 cut(s)	285, 703
RsaNI	GTAC	2 cut(s)	284, 702
SaqAI	TTAA	4 cut(s)	8, 63, 636, 1296
SatI	GCNGC	3 cut(s)	309, 651, 1098
Sau3AI	GATC	7 cut(s)	273, 445, 789, 822, 1067, 1125, 1173
Sau96I	GGNCC	3 cut(s)	356, 405, 1028
ScrFI	CCNGG	2 cut(s)	615, 675
SduI	GDGCHC	2 cut(s)	774, 957
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	813
SinI	GGWCC	2 cut(s)	356, 1028
SmlI	CTYRAG	2 cut(s)	485, 573
SmoI	CTYRAG	2 cut(s)	485, 573
SsiI	CCGC	6 cut(s)	258, 1011, 1046, 1076, 1187, 1197
SspMI	CTAG	2 cut(s)	365, 1014
StyD4I	CCNGG	2 cut(s)	613, 673
TaaI	ACNGT	2 cut(s)	455, 1212
TaiI	ACGT	1 cut(s)	546
TaqII	GACCGA	3 cut(s)	203, 511, 919
Tru1I	TTAA	4 cut(s)	8, 63, 636, 1296
Tru9I	TTAA	4 cut(s)	8, 63, 636, 1296
TscAI	CASTG	3 cut(s)	274, 460, 1038
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	3 cut(s)	308, 650, 1097
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	1297
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	3 cut(s)	274, 460, 1038
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	356, 1028
XapI	RAATTY	5 cut(s)	39, 79, 338, 371, 944
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	3 cut(s)	243, 609, 1188
XspI	CTAG	2 cut(s)	365, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.