Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010328

Physical Location & Seq

Genomic Coordinates Reverse (-)

8171352 .. 8172523

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1110000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCAGGTACCCACGTGGGAAAAGGTTCAAGTTTAGGACTTTCGGTTTTGGAGGCGGCTTCTGTGCTAACGGCCATAATTGTTGTTCACGAGAGTGGTCACTTCCTTGCTGCTTATCTCCAAGGCATCCATGTAAGTAAATTTGCAGTTGGTTTTGGTCCAATTTTAGCTAAATTCAATGCAAACAATGTGGAGTATTCTATTAGAGCTTTTCCTCTAGGTGGGTTTGTGGGGTTTCCAGATAATGATCCAGATAGTGATATTCCAGTTGACGATAAGAATCTGCTTAAGAACAGGCCAATATTGGATAGAATAATTGTGGTTTCAGCTGGTGTGGTTGCCAATATTATTTTTGCCTATCTTATAATCTTTACTCAAGTGTTGTCTGTTGGTTTGCCTGTACAAGAGGCCTATCCTGGGGTGCTTGTGCCCGAGGTTCGCCCCTTCTCCGCTGCTTCCCGAGATGGGTTGCTTGCCGGCGATGTGATCCTTAAGGTTAACGGAAATGAATTGCCAAGAGGAGGTCCTAATGGTGTTTCAGAGATTGTTGATGTGATTAAGCAGAATCCCAAAAGAAATGTGGTTCTTAAGGTTGCGAGGGGACAGCAGGATTTTGAAATTGGGATCACCCCGGATGAGAATTATGATGGAACAGGCAAAATCGGAGTGCAACTATCGCCAAATGTGAAGTTTACGAAAGTTAAACCCAAAAGTGTTTCAGAAGCTTTTAATTATACTGGGAGAGAATTTTGGGGCTTGTCATTTAATGTTTTAGATAGTTTAAAGCAGACTGTTCTTAACTTCTCGCAGACAGCTAGCAAGGTTTCAGGTCCAGTTGCAATCATAGCTGTAGGGGCAGAAGTTGCAAGGTCGAATATTGATGGACTCTATCAGTTCGCAGCCTTGCTTAATCTCAACCTTGCAGTAATCAACCTTCTTCCGTTACCTGCTTTAGACGGTGGTACCTTGGCTTTCATCCTCATAGAGGCTGCCAGGGGTGGGAGAAAGCTCCCTCTAGAAGTAGAGCAGGGGATTATGTCATCAGGGATAACTCTTGTTATTTTCCTAGGATTGTTCCTTATTGTTAAGGACACGCTTAACCTCGATTTTATCAAGGACATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Peptidase_M50

Protein Analysis

376

Amino Acids

39.94

Weight (kDa)

5.87

Isoelectric Point (pI)

26.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50	PF02163	20 - 356	2.5e-57	Peptidase family M50
PDZ_2	PF13180	131 - 207	3.7e-07	PDZ domain
PDZ_6	PF17820	143 - 200	1.7e-09	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05140 AT2G32480 AT2G32480
fragaria_vesca	FvH4_6g43160 FvH4_6g43160
malus_domestica	MD09G1110000.v1.1
prunus_persica	Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1
pyrus_communis	pycom09g03250 pycom17g09350
rosa_chinensis	RchiOBHm_Chr2g0159081
rosa_laevigata	RLG00000021136
rosa_multiflora	Rmu_sc0003185.1_g000006
rosa_roxburghii	Rroxscaffold_2G00090800
rosa_rugosa	Rorug02G0473900
rosa_samantha	Rh2AG540700 Rh2BG553400 Rh2CG523800 Rh2DG563300
rosa_wichuraiana	Rw2G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	955
Acc65I	GGTACC	2 cut(s)	8, 962
AccB1I	GGYRCC	2 cut(s)	8, 962
AciI	CCGC	2 cut(s)	56, 450
AclWI	GGATC	3 cut(s)	242, 481, 632
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	3 cut(s)	140, 173, 746
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	3 cut(s)	10, 402, 964
AfiI	CCNNNNNNNGG	6 cut(s)	221, 417, 465, 521, 985, 999
AflII	CTTAAG	3 cut(s)	287, 491, 587
AflIII	ACRYGT	1 cut(s)	1119
AgsI	TTSAA	3 cut(s)	30, 178, 617
AjnI	CCWGG	2 cut(s)	415, 992
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	7 cut(s)	170, 209, 329, 725, 815, 848, 1009
AluI	AGCT	7 cut(s)	170, 209, 329, 725, 815, 848, 1009
AlwI	GGATC	3 cut(s)	242, 481, 632
Ama87I	CYCGRG	2 cut(s)	431, 459
AoxI	GGCC	3 cut(s)	72, 296, 408
ApeKI	GCWGC	4 cut(s)	110, 452, 899, 989
ApoI	RAATTY	3 cut(s)	140, 173, 746
Asp700I	GAANNNNTTC	1 cut(s)	25
Asp718I	GGTACC	2 cut(s)	8, 962
AspA2I	CCTAGG	1 cut(s)	1066
AspS9I	GGNCC	3 cut(s)	158, 524, 830
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	1 cut(s)	619
AsuNHI	GCTAGC	1 cut(s)	815
AvaI	CYCGRG	2 cut(s)	431, 459
AvaII	GGWCC	3 cut(s)	158, 524, 830
AvrII	CCTAGG	1 cut(s)	1066
BaeGI	GKGCMC	1 cut(s)	432
BaeI	ACNNNNGTAYC	3 cut(s)	33, 946, 979
BanI	GGYRCC	2 cut(s)	8, 962
BarI	GAAGNNNNNNTAC	2 cut(s)	918, 950
BauI	CACGAG	1 cut(s)	89
BbrPI	CACGTG	1 cut(s)	16
BbvI	GCAGC	4 cut(s)	97, 439, 911, 976
BccI	CCATC	3 cut(s)	458, 641, 875
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	2 cut(s)	417, 994
BcnI	CCSGG	1 cut(s)	632
BfaI	CTAG	4 cut(s)	218, 816, 1016, 1067
BfmI	CTRYAG	1 cut(s)	849
BfrI	CTTAAG	3 cut(s)	287, 491, 587
BfuAI	ACCTGC	1 cut(s)	955
BisI	GCNGC	5 cut(s)	57, 111, 453, 900, 990
BlnI	CCTAGG	1 cut(s)	1066
BlsI	GCNGC	5 cut(s)	58, 112, 454, 901, 991
Bme1390I	CCNGG	3 cut(s)	417, 632, 994
Bme18I	GGWCC	3 cut(s)	158, 524, 830
BmeT110I	CYCGRG	2 cut(s)	431, 459
BmgT120I	GGNCC	3 cut(s)	158, 524, 830
BmiI	GGNNCC	2 cut(s)	10, 964
BmrFI	CCNGG	3 cut(s)	417, 632, 994
BmrI	ACTGGG	1 cut(s)	747
BmsI	GCATC	1 cut(s)	135
BmtI	GCTAGC	1 cut(s)	819
BmuI	ACTGGG	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	16
BsaBI	GATNNNNATC	2 cut(s)	246, 279
BsaJI	CCNNGG	7 cut(s)	121, 416, 432, 630, 966, 993, 1066
Bsc4I	CCNNNNNNNGG	6 cut(s)	221, 417, 465, 521, 985, 999
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	3 cut(s)	266, 742, 833
Bse8I	GATNNNNATC	2 cut(s)	246, 279
BseBI	CCWGG	2 cut(s)	417, 994
BseDI	CCNNGG	7 cut(s)	121, 416, 432, 630, 966, 993, 1066
BseGI	GGATG	3 cut(s)	126, 640, 975
BseJI	GATNNNNATC	2 cut(s)	246, 279
BseLI	CCNNNNNNNGG	6 cut(s)	221, 417, 465, 521, 985, 999
BseNI	ACTGG	3 cut(s)	266, 742, 833
BseRI	GAGGAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	4 cut(s)	97, 439, 911, 976
BshFI	GGCC	3 cut(s)	74, 298, 410
BshNI	GGYRCC	2 cut(s)	8, 962
BsiHKCI	CYCGRG	2 cut(s)	431, 459
BsiSI	CCGG	2 cut(s)	477, 632
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	6 cut(s)	221, 417, 465, 521, 985, 999
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	3 cut(s)	74, 298, 410
BsoBI	CYCGRG	2 cut(s)	431, 459
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	247, 486, 624
BspACI	CCGC	2 cut(s)	56, 450
BspANI	GGCC	3 cut(s)	74, 298, 410
BspLI	GGNNCC	2 cut(s)	10, 964
BspMI	ACCTGC	1 cut(s)	955
BspOI	GCTAGC	1 cut(s)	819
BspPI	GGATC	3 cut(s)	242, 481, 632
BspT107I	GGYRCC	2 cut(s)	8, 962
BspTI	CTTAAG	3 cut(s)	287, 491, 587
BsrFI	RCCGGY	1 cut(s)	476
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	266, 742, 833
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	7 cut(s)	121, 416, 432, 630, 966, 993, 1066
BssMI	GATC	3 cut(s)	247, 486, 624
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	3 cut(s)	121, 966, 1066
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	417, 994
Bst4CI	ACNGT	2 cut(s)	793, 959
BstAFI	CTTAAG	3 cut(s)	287, 491, 587
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstAUI	TGTACA	1 cut(s)	400
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	474, 478, 817
BstENI	CCTNNNNNAGG	1 cut(s)	983
BstF5I	GGATG	3 cut(s)	126, 640, 975
BstKTI	GATC	3 cut(s)	250, 489, 627
BstMBI	GATC	3 cut(s)	247, 486, 624
BstMWI	GCNNNNNNNGC	4 cut(s)	676, 845, 854, 863
BstNI	CCWGG	2 cut(s)	417, 994
BstNSI	RCATGY	1 cut(s)	1123
BstSCI	CCNGG	3 cut(s)	415, 630, 992
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	4 cut(s)	97, 439, 911, 976
BsuRI	GGCC	3 cut(s)	74, 298, 410
BtgZI	GCGATG	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	126, 640, 975
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	3 cut(s)	474, 478, 817
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	158, 524, 830
Csp6I	GTAC	3 cut(s)	9, 401, 963
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	2 cut(s)	131, 1120
CviQI	GTAC	3 cut(s)	9, 401, 963
DpnI	GATC	3 cut(s)	249, 488, 626
DpnII	GATC	3 cut(s)	247, 486, 624
DraI	TTTAAA	1 cut(s)	783
EaeI	YGGCCR	1 cut(s)	72
Eco130I	CCWWGG	3 cut(s)	121, 966, 1066
Eco147I	AGGCCT	1 cut(s)	410
Eco47I	GGWCC	3 cut(s)	158, 524, 830
Eco72I	CACGTG	1 cut(s)	16
Eco88I	CYCGRG	2 cut(s)	431, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	983
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	415, 992
EcoT14I	CCWWGG	3 cut(s)	121, 966, 1066
ErhI	CCWWGG	3 cut(s)	121, 966, 1066
FaeI	CATG	2 cut(s)	134, 1123
FaiI	YATR	9 cut(s)	77, 132, 365, 645, 735, 845, 983, 1037, 1121
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	2 cut(s)	130, 1119
Fnu4HI	GCNGC	5 cut(s)	57, 111, 453, 900, 990
FokI	GGATG	3 cut(s)	113, 647, 962
Fsp4HI	GCNGC	5 cut(s)	57, 111, 453, 900, 990
FspBI	CTAG	4 cut(s)	218, 816, 1016, 1067
GluI	GCNGC	5 cut(s)	57, 111, 453, 900, 990
HaeIII	GGCC	3 cut(s)	74, 298, 410
HapII	CCGG	2 cut(s)	477, 632
Hin1II	CATG	2 cut(s)	134, 1123
HincII	GTYRAC	2 cut(s)	271, 499
HindII	GTYRAC	2 cut(s)	271, 499
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	3 cut(s)	280, 565, 885
HpaI	GTTAAC	1 cut(s)	499
HpaII	CCGG	2 cut(s)	477, 632
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	4 cut(s)	88, 271, 499, 693
Hpy188I	TCNGA	3 cut(s)	541, 665, 721
Hpy188III	TCNNGA	5 cut(s)	89, 239, 251, 459, 1016
Hpy8I	GTNNAC	4 cut(s)	88, 271, 499, 693
HpyAV	CCTTC	2 cut(s)	454, 944
HpyCH4III	ACNGT	2 cut(s)	793, 959
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	146, 182, 670, 839, 866, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	676, 845, 854, 863
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	134, 1123
KpnI	GGTACC	2 cut(s)	12, 966
KroI	GCCGGC	1 cut(s)	476
KroNI	GCCGGC	1 cut(s)	478
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	247, 486, 624
LmnI	GCTCC	1 cut(s)	1014
Lsp1109I	GCAGC	4 cut(s)	97, 439, 911, 976
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	4 cut(s)	218, 816, 1016, 1067
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	98, 942
MalI	GATC	3 cut(s)	249, 488, 626
MboI	GATC	3 cut(s)	247, 486, 624
MboII	GAAGA	1 cut(s)	929
MhlI	GDGCHC	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	879
MroNI	GCCGGC	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	2 cut(s)	329, 452
MspCI	CTTAAG	3 cut(s)	287, 491, 587
MspI	CCGG	2 cut(s)	477, 632
MspR9I	CCNGG	3 cut(s)	417, 632, 994
MvaI	CCWGG	2 cut(s)	417, 994
MwoI	GCNNNNNNNGC	4 cut(s)	676, 845, 854, 863
NaeI	GCCGGC	1 cut(s)	478
NciI	CCSGG	1 cut(s)	632
NdeII	GATC	3 cut(s)	247, 486, 624
NgoMIV	GCCGGC	1 cut(s)	476
NheI	GCTAGC	1 cut(s)	815
NlaIII	CATG	2 cut(s)	134, 1123
NlaIV	GGNNCC	2 cut(s)	10, 964
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	1123
OliI	CACNNNNGTG	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	410
PciI	ACATGT	1 cut(s)	1119
PdiI	GCCGGC	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	280, 565
PkrI	GCNGC	5 cut(s)	58, 112, 454, 901, 991
PleI	GAGTC	1 cut(s)	879
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	879
Ppu21I	YACGTR	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	524
PscI	ACATGT	1 cut(s)	1119
PsiI	TTATAA	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	415, 992
PspCI	CACGTG	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	415, 992
PspN4I	GGNNCC	2 cut(s)	10, 964
PspPI	GGNCC	3 cut(s)	158, 524, 830
PspPPI	RGGWCCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	10, 402, 964
RsaNI	GTAC	3 cut(s)	9, 401, 963
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	5 cut(s)	57, 111, 453, 900, 990
Sau3AI	GATC	3 cut(s)	247, 486, 624
Sau96I	GGNCC	3 cut(s)	158, 524, 830
SchI	GAGTC	1 cut(s)	879
ScrFI	CCNGG	3 cut(s)	417, 632, 994
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	849
SinI	GGWCC	3 cut(s)	158, 524, 830
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	4 cut(s)	287, 375, 491, 587
SmoI	CTYRAG	4 cut(s)	287, 375, 491, 587
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	2 cut(s)	56, 450
SspI	AATATT	3 cut(s)	303, 346, 877
SspMI	CTAG	4 cut(s)	218, 816, 1016, 1067
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	3 cut(s)	415, 630, 992
StyI	CCWWGG	3 cut(s)	121, 966, 1066
TaaI	ACNGT	2 cut(s)	793, 959
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	872, 1104
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	280, 565
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	4 cut(s)	110, 452, 899, 989
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	522, 964
TspGWI	ACGGA	2 cut(s)	516, 930
Vha464I	CTTAAG	3 cut(s)	287, 491, 587
VpaK11BI	GGWCC	3 cut(s)	158, 524, 830
XagI	CCTNNNNNAGG	1 cut(s)	983
XapI	RAATTY	3 cut(s)	140, 173, 746
XbaI	TCTAGA	1 cut(s)	1015
XceI	RCATGY	1 cut(s)	1123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmaJI	CCTAGG	1 cut(s)	1066
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	4 cut(s)	218, 816, 1016, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.