Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010328

Physical Location & Seq

Genomic Coordinates Forward (+)

60531109 .. 60533667

Gene Structure 2559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0473900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTGGAATCGTGGAAACAAATCGAAGGCATATAATGGGCCTCAGAACCGTTTCGTTGCATTTCTGGTTGTGTCTGTGACATTAGTTACTCTTGTTTTCATAATGTTGTTTCACAACACTGATCAAAAGCCAAGTTCAGTACTGGGACTTCGGATGGAAAAGTGGAATAGCTTTGAGTCATTGGTGCAACTATCTCCGACCGTAGATTTCCGGAATGGAACAGATGTAATATGGCAAATACCAGATTCACCTAAAGCAGTCCTCTTTCTGGCTCATGGTTGTGATGGTAGAGCTGCTAACTTTTGGGACAAGTCCTCTACCTGCCCAAACTGCGTTGGTTTGCCAGAAGAAAGACTAATTGCTCTTCACGCTCTTGCTCGAAAGTTTGCTGTTCTTACCATATCAAGTAAAGAGAGATGCTGGACTTTTGGGAAGGAAATAGTTATTGTTAAGGATATTCTAACATGGTTGGTTAAGAAAAACAAGCTTGAAAAACTTCCTCTTGTGGCTTTGGGTGCCTCTTCTGGGGGATACTTTGTCTCCGTGCTTGCCACTGAGTTGAAGTTCAGTAGTATTACACTTATGATTGCTGAAGGGATGTTTGATCATATAGATATAAAGGAGAACTATCCGCCTACCCTATTTGTGCACATGCCTAAAGATCTATTTAGGCAGAAAAAGATAGCTGACTATATGGAAGTTTTGAAAAATAATGGTGTTGATGTTGAAGAGATCGAGTGCATGGAGTTTCCCTTGTCACCACATCTCTTAGCCAATAGAATCCCAGGTCTTGATCAGTCTGTTTCTGCTAAGCTCTTTGATCTCTTCCGCCATGAGGGGTTTATTGATGAGAATGGATATATGAAGAATGATGGCCGCAGAACGCATTGGAAAGAGGCTGTGAGAAAGAGTAATATCATTTTTCCAGACAAGCAGCTAGCCCATTACATTCAGGAGGAGTTAAATCTTGCATTCGCGGTCCATGAAATGACAAGCTTACACTCTGACAGGATCTTCAAATGGTTTGAATCTCATATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Peptidase_M50

Protein Analysis

347

Amino Acids

39.75

Weight (kDa)

8.18

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05140 AT2G32480 AT2G32480
fragaria_vesca	FvH4_6g43160 FvH4_6g43160
malus_domestica	MD09G1110000.v1.1
prunus_persica	Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1
pyrus_communis	pycom09g03250 pycom17g09350
rosa_chinensis	RchiOBHm_Chr2g0159081
rosa_laevigata	RLG00000021136
rosa_multiflora	Rmu_sc0003185.1_g000006
rosa_roxburghii	Rroxscaffold_2G00090800
rosa_rugosa	Rorug02G0473900
rosa_samantha	Rh2AG540700 Rh2BG553400 Rh2CG523800 Rh2DG563300
rosa_wichuraiana	Rw2G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	515
AccII	CGCG	1 cut(s)	977
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	4 cut(s)	632, 829, 877, 977
AclWI	GGATC	1 cut(s)	1019
AcoI	YGGCCR	1 cut(s)	874
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
AgsI	TTSAA	6 cut(s)	491, 562, 706, 728, 1018, 1028
AjnI	CCWGG	1 cut(s)	784
AluBI	AGCT	7 cut(s)	171, 293, 487, 686, 814, 937, 996
AluI	AGCT	7 cut(s)	171, 293, 487, 686, 814, 937, 996
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	1 cut(s)	544
Alw44I	GTGCAC	1 cut(s)	647
AlwI	GGATC	1 cut(s)	1019
Aor13HI	TCCGGA	1 cut(s)	210
AoxI	GGCC	2 cut(s)	38, 874
ApaLI	GTGCAC	1 cut(s)	647
ApeKI	GCWGC	2 cut(s)	293, 934
Asp700I	GAANNNNTTC	2 cut(s)	50, 495
AspS9I	GGNCC	2 cut(s)	38, 979
AsuHPI	GGTGA	2 cut(s)	240, 750
AsuNHI	GCTAGC	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	979
BaeGI	GKGCMC	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	515
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	2 cut(s)	280, 946
BccI	CCATC	3 cut(s)	148, 278, 866
BciT130I	CCWGG	1 cut(s)	786
BciVI	GTATCC	1 cut(s)	524
BclI	TGATCA	3 cut(s)	121, 604, 793
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	1 cut(s)	938
BfuAI	ACCTGC	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	3 cut(s)	294, 877, 935
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	3 cut(s)	295, 878, 936
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	1 cut(s)	979
BmgT120I	GGNCC	2 cut(s)	38, 979
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	786
BmrI	ACTGGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	407
BmtI	GCTAGC	1 cut(s)	941
BmuI	ACTGGG	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	810
BsaJI	CCNNGG	1 cut(s)	784
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 525, 835
Bse1I	ACTGG	1 cut(s)	147
BseAI	TCCGGA	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	2 cut(s)	159, 603
BseLI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
BseMII	CTCAG	2 cut(s)	56, 546
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	971
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	2 cut(s)	280, 946
Bsh1236I	CGCG	1 cut(s)	977
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	40, 876
BshNI	GGYRCC	1 cut(s)	515
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	159, 320
BslI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	2 cut(s)	159, 320
BsmI	GAATGC	1 cut(s)	971
BsnI	GGCC	2 cut(s)	40, 876
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
Bsp1720I	GCTNAGC	1 cut(s)	810
BspACI	CCGC	4 cut(s)	632, 829, 877, 977
BspANI	GGCC	2 cut(s)	40, 876
BspCNI	CTCAG	2 cut(s)	55, 547
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	977
BspLI	GGNNCC	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	329
BspOI	GCTAGC	1 cut(s)	941
BspPI	GGATC	1 cut(s)	1019
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	50, 202
Bst6I	CTCTTC	4 cut(s)	369, 526, 723, 830
BstC8I	GCNNGC	2 cut(s)	549, 939
BstDEI	CTNAG	4 cut(s)	42, 555, 769, 810
BstF5I	GGATG	2 cut(s)	159, 603
BstFNI	CGCG	1 cut(s)	977
BstKTI	GATC	7 cut(s)	124, 607, 664, 735, 796, 823, 1014
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 368, 515
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	784
BstSLI	GKGCMC	1 cut(s)	651
BstUI	CGCG	1 cut(s)	977
BstV1I	GCAGC	2 cut(s)	280, 946
BstX2I	RGATCY	2 cut(s)	661, 1011
BstYI	RGATCY	2 cut(s)	661, 1011
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	40, 876
BtsCI	GGATG	2 cut(s)	159, 603
BtsIMutI	CAGTG	2 cut(s)	117, 552
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	549, 939
Cfr13I	GGNCC	2 cut(s)	38, 979
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	6 cut(s)	275, 465, 652, 742, 833, 983
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	4 cut(s)	42, 555, 769, 810
DpnI	GATC	7 cut(s)	123, 606, 663, 734, 795, 822, 1013
DpnII	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	4 cut(s)	369, 526, 723, 830
EarI	CTCTTC	4 cut(s)	369, 526, 723, 830
EciI	GGCGGA	2 cut(s)	621, 818
Eco47I	GGWCC	1 cut(s)	979
Eco57I	CTGAAG	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	784
FaeI	CATG	6 cut(s)	278, 468, 655, 745, 836, 986
FaqI	GGGAC	2 cut(s)	159, 320
FatI	CATG	6 cut(s)	274, 464, 651, 741, 832, 982
FauNDI	CATATG	1 cut(s)	1035
FbaI	TGATCA	3 cut(s)	121, 604, 793
Fnu4HI	GCNGC	3 cut(s)	294, 877, 935
FokI	GGATG	2 cut(s)	166, 610
Fsp4HI	GCNGC	3 cut(s)	294, 877, 935
FspBI	CTAG	1 cut(s)	938
GluI	GCNGC	3 cut(s)	294, 877, 935
HaeIII	GGCC	2 cut(s)	40, 876
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	6 cut(s)	278, 468, 655, 745, 836, 986
HindIII	AAGCTT	2 cut(s)	485, 994
HinfI	GANTC	5 cut(s)	7, 176, 245, 780, 1028
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	2 cut(s)	240, 750
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	4 cut(s)	45, 153, 198, 1006
Hpy188III	TCNNGA	4 cut(s)	211, 791, 926, 953
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	3 cut(s)	19, 427, 587
HpyCH4III	ACNGT	2 cut(s)	50, 202
HpyCH4V	TGCA	5 cut(s)	59, 187, 649, 741, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 368, 515
HpyF3I	CTNAG	4 cut(s)	42, 555, 769, 810
Hsp92II	CATG	6 cut(s)	278, 468, 655, 745, 836, 986
Kpn2I	TCCGGA	1 cut(s)	210
Ksp22I	TGATCA	3 cut(s)	121, 604, 793
Kzo9I	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	2 cut(s)	280, 946
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	938
MaeIII	GTNAC	3 cut(s)	76, 85, 756
MalI	GATC	7 cut(s)	123, 606, 663, 734, 795, 822, 1013
MboI	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
MboII	GAAGA	7 cut(s)	356, 359, 513, 740, 817, 877, 1006
MflI	RGATCY	2 cut(s)	661, 1011
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	1 cut(s)	357
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	9 cut(s)	51, 272, 325, 510, 529, 829, 889, 949, 1032
MroI	TCCGGA	1 cut(s)	210
MroXI	GAANNNNTTC	2 cut(s)	50, 495
MseI	TTAA	3 cut(s)	450, 474, 962
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	786
Mva1269I	GAATGC	1 cut(s)	971
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	1 cut(s)	977
MwoI	GCNNNNNNNGC	3 cut(s)	330, 368, 515
NdeI	CATATG	1 cut(s)	1035
NdeII	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
NheI	GCTAGC	1 cut(s)	937
NlaIII	CATG	6 cut(s)	278, 468, 655, 745, 836, 986
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	76, 756
NspI	RCATGY	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	971
PdmI	GAANNNNTTC	2 cut(s)	50, 495
PfeI	GAWTC	4 cut(s)	7, 245, 780, 1028
PkrI	GCNGC	3 cut(s)	295, 878, 936
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	38, 979
PsuI	RGATCY	2 cut(s)	661, 1011
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	3 cut(s)	450, 474, 962
SatI	GCNGC	3 cut(s)	294, 877, 935
Sau3AI	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
Sau96I	GGNCC	2 cut(s)	38, 979
ScaI	AGTACT	1 cut(s)	141
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	1 cut(s)	407
SinI	GGWCC	1 cut(s)	979
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	4 cut(s)	632, 829, 877, 977
SspMI	CTAG	1 cut(s)	938
StyD4I	CCNGG	1 cut(s)	784
TaaI	ACNGT	2 cut(s)	50, 202
TaqI	TCGA	3 cut(s)	23, 379, 735
TasI	AATT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	879
TfiI	GAWTC	4 cut(s)	7, 245, 780, 1028
Tru1I	TTAA	3 cut(s)	450, 474, 962
Tru9I	TTAA	3 cut(s)	450, 474, 962
TscAI	CASTG	2 cut(s)	124, 559
TseFI	GTSAC	2 cut(s)	76, 756
TseI	GCWGC	2 cut(s)	293, 934
Tsp45I	GTSAC	2 cut(s)	76, 756
TspDTI	ATGAA	3 cut(s)	88, 878, 999
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	2 cut(s)	124, 559
VneI	GTGCAC	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	979
XceI	RCATGY	1 cut(s)	655
XmnI	GAANNNNTTC	2 cut(s)	50, 495
XspI	CTAG	1 cut(s)	938
ZrmI	AGTACT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.