Rh2BG553400

Peptidase family M50

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
76168767 .. 76170125
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG553400.1

Sequence Viewer

Length: 1359 bp
ATGGTTATTAATCTCTCATCTTCTCCACCCTCATCTTCTTTGTCTTTCATCAAGTTAACCAATTCAAGGTCCCCCATCTGTGAGTTTCCATCAAAACCCAAAACCCACCTCCCAAAGCCCCTATCTTGCTGCTCATTTTCTTCATCAGACCTTAACTTTCATTGCAAGGATCCATTTTTATCTGTAAAGGGTAGGAGCCCAAATGGGAGAAGGTTAAAGTTCAGGTCTTGTGCACTTCCTGGTTTTGATTATGGCAACTTTGAGAGTGTTCAGTCAGTTTTGGAGGCAGCTGGAGTGTTAACAGCCATCATTGTTGTTCATGAAAGTGGTCATTTCCTTGCTGCTTATCTTCAGGGTATCCATGTAAGTAAATTTGCAGTTGGGTTTGGTCCAATTTTAGCTAAATTCAATGCCAACAATGTAGAGTATTCCATCAGAGCTTTCCCTCTAGGAGGGTTTGTGGGGTTTCCTGATAATGATCCAAATAGTGATATCCCAGTTGATGATGTAAATTTGCTCAAGAATAGGCCAATATTGGATAGAGTAATAGTGGTTTCAGCTGGTGTGATTGCCAACGTAATTTTTGCCTATGCTATAATCTTTACTCAAGTCTTGTCAGTTGGTTTGCCTGTACAAGAGGGCTATCCTGGGGTTCTTGTGCCTGAGGTTCGACCCTTTTCGGCTGCTTCCCGAGACGGGTTGCTTGCAGGTGATGTAATCCTTGAGGTTAATGGAATTCAATTGCCGAAAGGAGGGTCTAATGCTGTTACAGGGGTTGTTGATGTGATTAAGAAAAATCCAAAAAGAAATGTGGTTCTTAAGGTTGAGAGGGGAAAGCAGGATTTCGAGATTGGAGTCACCCCCGATGAGAATTATGATGGAACAGGCAAAATTGGAGTGCAGTTATCACCAAATGTTAAGCTTTCGAAAGCTAAACCCAAAAATATATCGGAGGCTTTCAATTATACAGGGAGAGAGTTCTGGGGCTTGTCGTTTAATGTATTGGATAGCTTAAAACAGACTGTTCTAAACTTCTCGCAGACAGCTAGTAAAGTTTCGGGTCCAGTTGCCATCATTGCTGTTGGTGCAGAAGTTGCAAGGTCGAATCTTGATGGACTGTATCAATTTGCTGCTTTGCTTAATCTTAACCTTGCAGTGATCAACCTTCTTCCCTTACCTGCTCTAGATGGAGGTACCTTGGCTTTCATACTTATAGAGGCTGCTAGGGGTGGTAGAAAACTCCCTCTAGAAGTGGAACAGACGATTATGTCGTCAGGGATAACGGTAGTTGTTTTCCTAGGATTATTCCTTATTGTCCGGGACACACTTAATCTTGATTTTATCAGAGACATGTTGTGA

Protein Analysis

452

Amino Acids

48.52

Weight (kDa)

8.67

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50 PF02163 97 - 432 5.2e-57 Peptidase family M50
PDZ PF00595 207 - 274 4.7e-06 PDZ domain
PDZ_2 PF13180 208 - 284 3e-07 PDZ domain
PDZ_6 PF17820 220 - 277 8.2e-08 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 698
AasI GACNNNNNNGTC 1 cut(s) 1267
Acc36I ACCTGC 2 cut(s) 698, 1186
Acc65I GGTACC 1 cut(s) 1193
AccB1I GGYRCC 1 cut(s) 1193
AclWI GGATC 3 cut(s) 164, 177, 473
AcsI RAATTY 4 cut(s) 371, 404, 511, 735
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 2 cut(s) 633, 1195
AfiI CCNNNNNNNGG 4 cut(s) 66, 452, 696, 752
AflII CTTAAG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 1350
AgsI TTSAA 4 cut(s) 66, 409, 740, 961
AjnI CCWGG 2 cut(s) 238, 646
AluBI AGCT 8 cut(s) 290, 401, 440, 560, 922, 932, 1011, 1046
AluI AGCT 8 cut(s) 290, 401, 440, 560, 922, 932, 1011, 1046
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 687, 1341
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 3 cut(s) 164, 177, 473
Ama87I CYCGRG 1 cut(s) 690
AoxI GGCC 1 cut(s) 527
ApaLI GTGCAC 1 cut(s) 231
ApeKI GCWGC 6 cut(s) 129, 287, 341, 683, 1130, 1220
ApoI RAATTY 4 cut(s) 371, 404, 511, 735
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
AseI ATTAAT 1 cut(s) 9
Asp718I GGTACC 1 cut(s) 1193
AspA2I CCTAGG 1 cut(s) 1297
AspS9I GGNCC 3 cut(s) 69, 389, 1061
AsuC2I CCSGG 1 cut(s) 1319
AsuHPI GGTGA 3 cut(s) 722, 850, 900
AsuII TTCGAA 1 cut(s) 926
AvaI CYCGRG 1 cut(s) 690
AvaII GGWCC 3 cut(s) 69, 389, 1061
AvrII CCTAGG 1 cut(s) 1297
AxyI CCTNAGG 1 cut(s) 663
BaeGI GKGCMC 1 cut(s) 235
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 1193
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 6 cut(s) 116, 299, 328, 670, 1117, 1207
BccI CCATC 8 cut(s) 83, 97, 314, 440, 872, 1079, 1106, 1181
BciT130I CCWGG 2 cut(s) 240, 648
BciVI GTATCC 1 cut(s) 368
BclI TGATCA 1 cut(s) 1158
BcnI CCSGG 1 cut(s) 1319
BcoDI GTCTC 2 cut(s) 687, 1341
BfaI CTAG 6 cut(s) 449, 1047, 1184, 1224, 1247, 1298
BfrI CTTAAG 1 cut(s) 818
BfuAI ACCTGC 2 cut(s) 698, 1186
BfuI GTATCC 1 cut(s) 368
BisI GCNGC 6 cut(s) 130, 288, 342, 684, 1131, 1221
BlnI CCTAGG 1 cut(s) 1297
BlsI GCNGC 6 cut(s) 131, 289, 343, 685, 1132, 1222
Bme1390I CCNGG 3 cut(s) 240, 648, 1319
Bme18I GGWCC 3 cut(s) 69, 389, 1061
BmeT110I CYCGRG 1 cut(s) 690
BmgT120I GGNCC 3 cut(s) 69, 389, 1061
BmiI GGNNCC 5 cut(s) 71, 171, 197, 1062, 1195
BmrFI CCNGG 3 cut(s) 240, 648, 1319
BmrI ACTGGG 1 cut(s) 491
BmuI ACTGGG 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 926
BpuEI CTTGAG 3 cut(s) 503, 591, 743
BpuMI CCSGG 1 cut(s) 1319
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 647, 1197, 1297
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 452, 696, 752
Bse1I ACTGG 2 cut(s) 497, 1064
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 2 cut(s) 160, 1074
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 2 cut(s) 240, 648
BseDI CCNNGG 3 cut(s) 647, 1197, 1297
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 4 cut(s) 66, 452, 696, 752
BseMI GCAATG 2 cut(s) 160, 1074
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 2 cut(s) 497, 1064
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 6 cut(s) 116, 299, 328, 670, 1117, 1207
BsgI GTGCAG 2 cut(s) 920, 1107
BshFI GGCC 1 cut(s) 529
BshNI GGYRCC 1 cut(s) 1193
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 690
BsiSI CCGG 1 cut(s) 1318
BslFI GGGAC 2 cut(s) 55, 1334
BslI CCNNNNNNNGG 4 cut(s) 66, 452, 696, 752
BsmAI GTCTC 2 cut(s) 687, 1341
BsmBI CGTCTC 1 cut(s) 687
BsmFI GGGAC 2 cut(s) 55, 1334
BsnI GGCC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 690
Bsp119I TTCGAA 1 cut(s) 926
Bsp1286I GDGCHC 2 cut(s) 200, 235
Bsp1407I TGTACA 1 cut(s) 631
Bsp143I GATC 3 cut(s) 169, 478, 1158
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 1 cut(s) 655
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 5 cut(s) 71, 171, 197, 1062, 1195
BspMI ACCTGC 2 cut(s) 698, 1186
BspPI GGATC 3 cut(s) 164, 177, 473
BspT104I TTCGAA 1 cut(s) 926
BspT107I GGYRCC 1 cut(s) 1193
BspTI CTTAAG 1 cut(s) 818
BsrDI GCAATG 2 cut(s) 160, 1074
BsrGI TGTACA 1 cut(s) 631
BsrI ACTGG 2 cut(s) 497, 1064
BssECI CCNNGG 3 cut(s) 647, 1197, 1297
BssMI GATC 3 cut(s) 169, 478, 1158
BssT1I CCWWGG 2 cut(s) 1197, 1297
Bst2UI CCWGG 2 cut(s) 240, 648
Bst4CI ACNGT 3 cut(s) 1024, 1119, 1285
BstAFI CTTAAG 1 cut(s) 818
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstAUI TGTACA 1 cut(s) 631
BstBI TTCGAA 1 cut(s) 926
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 1 cut(s) 663
BstENI CCTNNNNNAGG 1 cut(s) 450
BstKTI GATC 3 cut(s) 172, 481, 1161
BstMAI GTCTC 2 cut(s) 687, 1341
BstMBI GATC 3 cut(s) 169, 478, 1158
BstMWI GCNNNNNNNGC 3 cut(s) 1076, 1085, 1094
BstNI CCWGG 2 cut(s) 240, 648
BstNSI RCATGY 1 cut(s) 1354
BstSCI CCNGG 3 cut(s) 238, 646, 1317
BstSLI GKGCMC 1 cut(s) 235
BstV1I GCAGC 6 cut(s) 116, 299, 328, 670, 1117, 1207
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 663
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 1161
BtsIMutI CAGTG 1 cut(s) 1161
BveI ACCTGC 2 cut(s) 698, 1186
Cac8I GCNNGC 1 cut(s) 705
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 3 cut(s) 69, 389, 1061
Csp6I GTAC 2 cut(s) 632, 1194
CviAII CATG 3 cut(s) 320, 362, 1351
CviQI GTAC 2 cut(s) 632, 1194
DdeI CTNAG 1 cut(s) 663
DpnI GATC 3 cut(s) 171, 480, 1160
DpnII GATC 3 cut(s) 169, 478, 1158
DrdI GACNNNNNNGTC 1 cut(s) 1267
DseDI GACNNNNNNGTC 1 cut(s) 1267
Eco130I CCWWGG 2 cut(s) 1197, 1297
Eco24I GRGCYC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 3 cut(s) 69, 389, 1061
Eco57I CTGAAG 1 cut(s) 335
Eco81I CCTNAGG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 690
EcoNI CCTNNNNNAGG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 735
EcoRII CCWGG 2 cut(s) 238, 646
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 2 cut(s) 1197, 1297
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 2 cut(s) 1197, 1297
Esp3I CGTCTC 1 cut(s) 687
FaeI CATG 3 cut(s) 323, 365, 1354
FaqI GGGAC 2 cut(s) 55, 1334
FatI CATG 3 cut(s) 319, 361, 1350
FbaI TGATCA 1 cut(s) 1158
Fnu4HI GCNGC 6 cut(s) 130, 288, 342, 684, 1131, 1221
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 6 cut(s) 130, 288, 342, 684, 1131, 1221
FspBI CTAG 6 cut(s) 449, 1047, 1184, 1224, 1247, 1298
GluI GCNGC 6 cut(s) 130, 288, 342, 684, 1131, 1221
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 529
HapII CCGG 1 cut(s) 1318
Hin1II CATG 3 cut(s) 323, 365, 1354
HincII GTYRAC 2 cut(s) 57, 300
HindII GTYRAC 2 cut(s) 57, 300
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 2 cut(s) 855, 1105
HpaI GTTAAC 2 cut(s) 57, 300
HpaII CCGG 1 cut(s) 1318
HphI GGTGA 3 cut(s) 722, 850, 900
Hpy166II GTNNAC 3 cut(s) 57, 233, 300
Hpy188I TCNGA 4 cut(s) 148, 437, 952, 1346
Hpy188III TCNNGA 9 cut(s) 320, 470, 520, 690, 847, 1109, 1184, 1247, 1334
Hpy8I GTNNAC 3 cut(s) 57, 233, 300
HpyAV CCTTC 2 cut(s) 204, 1175
HpyCH4III ACNGT 3 cut(s) 1024, 1119, 1285
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 8 cut(s) 165, 233, 377, 707, 901, 1088, 1097, 1154
HpyF10VI GCNNNNNNNGC 3 cut(s) 1076, 1085, 1094
HpyF3I CTNAG 1 cut(s) 663
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 3 cut(s) 323, 365, 1354
KpnI GGTACC 1 cut(s) 1197
Ksp22I TGATCA 1 cut(s) 1158
KspAI GTTAAC 2 cut(s) 57, 300
Kzo9I GATC 3 cut(s) 169, 478, 1158
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 6 cut(s) 116, 299, 328, 670, 1117, 1207
MaeI CTAG 6 cut(s) 449, 1047, 1184, 1224, 1247, 1298
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 766, 856
MalI GATC 3 cut(s) 171, 480, 1160
MboI GATC 3 cut(s) 169, 478, 1158
MboII GAAGA 5 cut(s) 12, 27, 132, 341, 1160
MfeI CAATTG 1 cut(s) 740
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 2 cut(s) 200, 235
MlyI GAGTC 1 cut(s) 864
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 2 cut(s) 290, 560
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 1318
MspR9I CCNGG 3 cut(s) 240, 648, 1319
MunI CAATTG 1 cut(s) 740
MvaI CCWGG 2 cut(s) 240, 648
MwoI GCNNNNNNNGC 3 cut(s) 1076, 1085, 1094
NciI CCSGG 1 cut(s) 1319
NdeII GATC 3 cut(s) 169, 478, 1158
NlaIII CATG 3 cut(s) 323, 365, 1354
NlaIV GGNNCC 5 cut(s) 71, 171, 197, 1062, 1195
NmuCI GTSAC 1 cut(s) 856
NspI RCATGY 1 cut(s) 1354
NspV TTCGAA 1 cut(s) 926
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 698
PciI ACATGT 1 cut(s) 1350
PcsI WCGNNNNNNNCGW 1 cut(s) 1268
PfeI GAWTC 1 cut(s) 1105
PfoI TCCNGGA 1 cut(s) 1317
PkrI GCNGC 6 cut(s) 131, 289, 343, 685, 1132, 1222
PleI GAGTC 1 cut(s) 863
PpsI GAGTC 1 cut(s) 863
PpuMI RGGWCCY 1 cut(s) 69
PscI ACATGT 1 cut(s) 1350
PshBI ATTAAT 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 238, 646
PspGI CCWGG 2 cut(s) 238, 646
PspN4I GGNNCC 5 cut(s) 71, 171, 197, 1062, 1195
PspPI GGNCC 3 cut(s) 69, 389, 1061
PspPPI RGGWCCY 1 cut(s) 69
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 2 cut(s) 290, 560
RsaI GTAC 2 cut(s) 633, 1195
RsaNI GTAC 2 cut(s) 632, 1194
RseI CAYNNNNRTG 1 cut(s) 324
SatI GCNGC 6 cut(s) 130, 288, 342, 684, 1131, 1221
Sau3AI GATC 3 cut(s) 169, 478, 1158
Sau96I GGNCC 3 cut(s) 69, 389, 1061
SchI GAGTC 1 cut(s) 864
ScrFI CCNGG 3 cut(s) 240, 648, 1319
SduI GDGCHC 2 cut(s) 200, 235
SfuI TTCGAA 1 cut(s) 926
SinI GGWCC 3 cut(s) 69, 389, 1061
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 4 cut(s) 518, 606, 722, 818
SmoI CTYRAG 4 cut(s) 518, 606, 722, 818
SspI AATATT 1 cut(s) 534
SspMI CTAG 6 cut(s) 449, 1047, 1184, 1224, 1247, 1298
StyD4I CCNGG 3 cut(s) 238, 646, 1317
StyI CCWWGG 2 cut(s) 1197, 1297
TaaI ACNGT 3 cut(s) 1024, 1119, 1285
TaiI ACGT 1 cut(s) 579
TaqI TCGA 4 cut(s) 670, 846, 926, 1103
TatI WGTACW 1 cut(s) 631
TfiI GAWTC 1 cut(s) 1105
TscAI CASTG 1 cut(s) 1161
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 6 cut(s) 129, 287, 341, 683, 1130, 1220
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 6 cut(s) 37, 132, 149, 308, 336, 1195
TspRI CASTG 1 cut(s) 1161
Vha464I CTTAAG 1 cut(s) 818
VneI GTGCAC 1 cut(s) 231
VpaK11BI GGWCC 3 cut(s) 69, 389, 1061
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 450
XapI RAATTY 4 cut(s) 371, 404, 511, 735
XbaI TCTAGA 2 cut(s) 1183, 1246
XceI RCATGY 1 cut(s) 1354
XmaJI CCTAGG 1 cut(s) 1297
XspI CTAG 6 cut(s) 449, 1047, 1184, 1224, 1247, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.