Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010328

Physical Location & Seq

Genomic Coordinates Forward (+)

72216377 .. 72217995

Gene Structure 1619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGACCAGCTCTGCCCTCCGCCGGTCAATCCCACAACCGGGTTCCGGAACCCAAATGGGAGAAGGTTAAAGTTCAGGTCTTGTGCACTTCCTGGTTTTGATTATGGCAACTTTGAGAGTGTTCAGTCAGTTTTGGAGGCAGCTGGAGTGTTAACAGCCATCATTGTTGTTCATGAAAGTGGTCATTTCCTTGCTGCTTATCTTCAGGGTATCCATGTAAGTAAATTTGCAGTTGGGTTTGGTCCAATTTTAGCTAAATTCAATGCCAACAATGTAGAGTATTCCATCAGAGCTTTCCCTCTAGGAGGGTTTGTGGGGTTTCCTGATAATGATCCAAATAGTGATATTCCAGTTGATGATGTAAATTTGCTCAAGAATAGGCCAATATTGGATAGAGTAATAGTGGTTTCAGCTGGTGTGATTGCCAACATAATTTTTGCCTATGCCATAATCTTTACTCAAGTCTTGTCAGTTGGTTTGCCTGTACAAGAGGGCTATCCTGGGGTTCTTGTGCCTGAGGTTCGACCCTTTTCGGCTGCTTCCCGAGACGGGTTGCTTGCGGGTGATGTGATCCTTGAGGTTAATGGAATTCAATTGCCGAAAGGAGGGTCTAATGCTGTTACAGGGGTTGTTGATGTGATTAAGAAAAATCCAAAAAGAAATGTGGTTCTTAAGGTTGAGAGGGGAAAGCAGGATTTCGAGATTGGGGTCATCCCCGATGAGAATTATGATGGAACAGGCAAAATTGGAGTGCAGTTATCACCAAATGTTAGGCTTTCAAAAGCTAAACCCAAAAATATATCAGAGGCTTTCAATTATACAGGGAGAGAGTTCTGGGGCTTGTCTTTTAATGTATTGGATAGCTTAAAACAGACTGTTCTAAACTTCTCGCAGACAGCTAGTAAAGTTTCGGGTCCAGTTGCCATCATTGCTGTTGGTGCAGAAGTTGCAAGGTCAAATCTTGATGGACTGTATCAATTTGCTGCTTTGCTTAATCTTAACCTTGCAGTGATCAACCTTCTTCCCTTACCTGCTCTAGATGGAGGTACCTTGGCTTTCATACTTATAGAGGCTGCTAGGGGTGGGAGAAAACTCCCTCTTGAAGTGGAACAGACGATTATGTCGTCAGGGATAACGGTAGTTGTTTTCCTAGGATTATTCCTTATTGTCCGGGACACACTTAATCTTGATTTTATCAGAGACATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Peptidase_M50

Protein Analysis

404

Amino Acids

43.26

Weight (kDa)

6.35

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50	PF02163	48 - 383	3.9e-57	Peptidase family M50
PDZ	PF00595	158 - 225	4e-06	PDZ domain
PDZ_2	PF13180	159 - 235	2.8e-07	PDZ domain
PDZ_6	PF17820	171 - 228	6.9e-08	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05140 AT2G32480 AT2G32480
fragaria_vesca	FvH4_6g43160 FvH4_6g43160
malus_domestica	MD09G1110000.v1.1
prunus_persica	Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1
pyrus_communis	pycom09g03250 pycom17g09350
rosa_chinensis	RchiOBHm_Chr2g0159081
rosa_laevigata	RLG00000021136
rosa_multiflora	Rmu_sc0003185.1_g000006
rosa_roxburghii	Rroxscaffold_2G00090800
rosa_rugosa	Rorug02G0473900
rosa_samantha	Rh2AG540700 Rh2BG553400 Rh2CG523800 Rh2DG563300
rosa_wichuraiana	Rw2G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1120
Acc36I	ACCTGC	1 cut(s)	1039
Acc65I	GGTACC	1 cut(s)	1046
AccB1I	GGYRCC	1 cut(s)	1046
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	2 cut(s)	20, 560
AclWI	GGATC	2 cut(s)	326, 565
AcsI	RAATTY	4 cut(s)	224, 257, 364, 588
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	2 cut(s)	486, 1048
AfiI	CCNNNNNNNGG	7 cut(s)	22, 38, 39, 45, 305, 549, 605
AflII	CTTAAG	1 cut(s)	671
AflIII	ACRYGT	1 cut(s)	1203
AgsI	TTSAA	5 cut(s)	262, 593, 780, 814, 1103
AjnI	CCWGG	2 cut(s)	91, 499
AluBI	AGCT	8 cut(s)	10, 143, 254, 293, 413, 785, 864, 899
AluI	AGCT	8 cut(s)	10, 143, 254, 293, 413, 785, 864, 899
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	540, 1194
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	326, 565
Ama87I	CYCGRG	1 cut(s)	543
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	1 cut(s)	380
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	5 cut(s)	140, 194, 536, 983, 1073
ApoI	RAATTY	4 cut(s)	224, 257, 364, 588
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
Asp718I	GGTACC	1 cut(s)	1046
AspA2I	CCTAGG	1 cut(s)	1150
AspS9I	GGNCC	3 cut(s)	4, 242, 914
AsuC2I	CCSGG	2 cut(s)	40, 1172
AsuHPI	GGTGA	2 cut(s)	575, 753
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	3 cut(s)	4, 242, 914
AvrII	CCTAGG	1 cut(s)	1150
AxyI	CCTNAGG	1 cut(s)	516
BaeGI	GKGCMC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	1046
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	5 cut(s)	152, 181, 523, 970, 1060
BccI	CCATC	6 cut(s)	167, 293, 725, 932, 959, 1034
BciT130I	CCWGG	2 cut(s)	93, 501
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	1011
BcnI	CCSGG	2 cut(s)	40, 1172
BcoDI	GTCTC	2 cut(s)	540, 1194
BfaI	CTAG	5 cut(s)	302, 900, 1037, 1077, 1151
BfrI	CTTAAG	1 cut(s)	671
BfuAI	ACCTGC	1 cut(s)	1039
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	5 cut(s)	141, 195, 537, 984, 1074
BlnI	CCTAGG	1 cut(s)	1150
BlsI	GCNGC	5 cut(s)	142, 196, 538, 985, 1075
Bme1390I	CCNGG	4 cut(s)	40, 93, 501, 1172
Bme18I	GGWCC	3 cut(s)	4, 242, 914
BmeT110I	CYCGRG	1 cut(s)	543
BmgT120I	GGNCC	3 cut(s)	4, 242, 914
BmiI	GGNNCC	4 cut(s)	44, 50, 915, 1048
BmrFI	CCNGG	4 cut(s)	40, 93, 501, 1172
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	3 cut(s)	356, 444, 596
BpuMI	CCSGG	2 cut(s)	40, 1172
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	500, 1050, 1150
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	7 cut(s)	22, 38, 39, 45, 305, 549, 605
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	350, 917
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	927
Bse8I	GATNNNNATC	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	93, 501
BseDI	CCNNGG	3 cut(s)	500, 1050, 1150
BseGI	GGATG	1 cut(s)	711
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	7 cut(s)	22, 38, 39, 45, 305, 549, 605
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	350, 917
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	5 cut(s)	152, 181, 523, 970, 1060
BsgI	GTGCAG	2 cut(s)	773, 960
BshFI	GGCC	1 cut(s)	382
BshNI	GGYRCC	1 cut(s)	1046
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	4 cut(s)	23, 39, 46, 1171
BslFI	GGGAC	1 cut(s)	1187
BslI	CCNNNNNNNGG	7 cut(s)	22, 38, 39, 45, 305, 549, 605
BsmAI	GTCTC	2 cut(s)	540, 1194
BsmBI	CGTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	1187
BsnI	GGCC	1 cut(s)	382
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp13I	TCCGGA	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	331, 570, 1011
BspACI	CCGC	2 cut(s)	20, 560
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	508
BspEI	TCCGGA	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	4 cut(s)	44, 50, 915, 1048
BspMI	ACCTGC	1 cut(s)	1039
BspPI	GGATC	2 cut(s)	326, 565
BspT107I	GGYRCC	1 cut(s)	1046
BspTI	CTTAAG	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	927
BsrFI	RCCGGY	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	350, 917
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	500, 1050, 1150
BssMI	GATC	3 cut(s)	331, 570, 1011
BssT1I	CCWWGG	2 cut(s)	1050, 1150
Bst2UI	CCWGG	2 cut(s)	93, 501
Bst4CI	ACNGT	3 cut(s)	877, 972, 1138
BstAFI	CTTAAG	1 cut(s)	671
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstAUI	TGTACA	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	1 cut(s)	516
BstENI	CCTNNNNNAGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	711
BstKTI	GATC	3 cut(s)	334, 573, 1014
BstMAI	GTCTC	2 cut(s)	540, 1194
BstMBI	GATC	3 cut(s)	331, 570, 1011
BstMWI	GCNNNNNNNGC	3 cut(s)	929, 938, 947
BstNI	CCWGG	2 cut(s)	93, 501
BstNSI	RCATGY	1 cut(s)	1207
BstSCI	CCNGG	4 cut(s)	38, 91, 499, 1170
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	5 cut(s)	152, 181, 523, 970, 1060
Bsu36I	CCTNAGG	1 cut(s)	516
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	711
BtsI	GCAGTG	1 cut(s)	1014
BtsIMutI	CAGTG	1 cut(s)	1014
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	1 cut(s)	558
CciI	TCATGA	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	3 cut(s)	4, 242, 914
Csp6I	GTAC	2 cut(s)	485, 1047
CviAII	CATG	3 cut(s)	173, 215, 1204
CviQI	GTAC	2 cut(s)	485, 1047
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	3 cut(s)	333, 572, 1013
DpnII	GATC	3 cut(s)	331, 570, 1011
DrdI	GACNNNNNNGTC	1 cut(s)	1120
DseDI	GACNNNNNNGTC	1 cut(s)	1120
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	1050, 1150
Eco47I	GGWCC	3 cut(s)	4, 242, 914
Eco57I	CTGAAG	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	543
EcoNI	CCTNNNNNAGG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	588
EcoRII	CCWGG	2 cut(s)	91, 499
EcoT14I	CCWWGG	2 cut(s)	1050, 1150
ErhI	CCWWGG	2 cut(s)	1050, 1150
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	3 cut(s)	176, 218, 1207
FaqI	GGGAC	1 cut(s)	1187
FatI	CATG	3 cut(s)	172, 214, 1203
FauI	CCCGC	1 cut(s)	553
FbaI	TGATCA	1 cut(s)	1011
Fnu4HI	GCNGC	5 cut(s)	141, 195, 537, 984, 1074
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	5 cut(s)	141, 195, 537, 984, 1074
FspBI	CTAG	5 cut(s)	302, 900, 1037, 1077, 1151
GluI	GCNGC	5 cut(s)	141, 195, 537, 984, 1074
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	4 cut(s)	23, 39, 46, 1171
Hin1II	CATG	3 cut(s)	176, 218, 1207
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HpaI	GTTAAC	1 cut(s)	153
HpaII	CCGG	4 cut(s)	23, 39, 46, 1171
HphI	GGTGA	2 cut(s)	575, 753
Hpy166II	GTNNAC	2 cut(s)	86, 153
Hpy188I	TCNGA	3 cut(s)	290, 805, 1199
Hpy8I	GTNNAC	2 cut(s)	86, 153
HpyAV	CCTTC	2 cut(s)	57, 1028
HpyCH4III	ACNGT	3 cut(s)	877, 972, 1138
HpyCH4V	TGCA	6 cut(s)	86, 230, 754, 941, 950, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	929, 938, 947
HpyF3I	CTNAG	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	176, 218, 1207
Kpn2I	TCCGGA	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	1050
Ksp22I	TGATCA	1 cut(s)	1011
KspAI	GTTAAC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	331, 570, 1011
Lsp1109I	GCAGC	5 cut(s)	152, 181, 523, 970, 1060
MaeI	CTAG	5 cut(s)	302, 900, 1037, 1077, 1151
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	3 cut(s)	333, 572, 1013
MboI	GATC	3 cut(s)	331, 570, 1011
MboII	GAAGA	2 cut(s)	194, 1013
MfeI	CAATTG	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	88
MroI	TCCGGA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	2 cut(s)	143, 413
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	4 cut(s)	23, 39, 46, 1171
MspR9I	CCNGG	4 cut(s)	40, 93, 501, 1172
MunI	CAATTG	1 cut(s)	593
MvaI	CCWGG	2 cut(s)	93, 501
MwoI	GCNNNNNNNGC	3 cut(s)	929, 938, 947
NciI	CCSGG	2 cut(s)	40, 1172
NdeII	GATC	3 cut(s)	331, 570, 1011
NlaIII	CATG	3 cut(s)	176, 218, 1207
NlaIV	GGNNCC	4 cut(s)	44, 50, 915, 1048
NspI	RCATGY	1 cut(s)	1207
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	1203
PcsI	WCGNNNNNNNCGW	1 cut(s)	1121
PfoI	TCCNGGA	1 cut(s)	1170
PkrI	GCNGC	5 cut(s)	142, 196, 538, 985, 1075
PscI	ACATGT	1 cut(s)	1203
Psp6I	CCWGG	2 cut(s)	91, 499
PspGI	CCWGG	2 cut(s)	91, 499
PspN4I	GGNNCC	4 cut(s)	44, 50, 915, 1048
PspPI	GGNCC	3 cut(s)	4, 242, 914
PvuII	CAGCTG	2 cut(s)	143, 413
RsaI	GTAC	2 cut(s)	486, 1048
RsaNI	GTAC	2 cut(s)	485, 1047
RseI	CAYNNNNRTG	1 cut(s)	177
SatI	GCNGC	5 cut(s)	141, 195, 537, 984, 1074
Sau3AI	GATC	3 cut(s)	331, 570, 1011
Sau96I	GGNCC	3 cut(s)	4, 242, 914
ScrFI	CCNGG	4 cut(s)	40, 93, 501, 1172
SduI	GDGCHC	1 cut(s)	88
SinI	GGWCC	3 cut(s)	4, 242, 914
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	4 cut(s)	371, 459, 575, 671
SmoI	CTYRAG	4 cut(s)	371, 459, 575, 671
SsiI	CCGC	2 cut(s)	20, 560
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	5 cut(s)	302, 900, 1037, 1077, 1151
StyD4I	CCNGG	4 cut(s)	38, 91, 499, 1170
StyI	CCWWGG	2 cut(s)	1050, 1150
TaaI	ACNGT	3 cut(s)	877, 972, 1138
TaqI	TCGA	2 cut(s)	523, 699
TatI	WGTACW	1 cut(s)	484
TscAI	CASTG	1 cut(s)	1014
TseI	GCWGC	5 cut(s)	140, 194, 536, 983, 1073
TspDTI	ATGAA	3 cut(s)	161, 189, 1048
TspRI	CASTG	1 cut(s)	1014
Vha464I	CTTAAG	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	3 cut(s)	4, 242, 914
XagI	CCTNNNNNAGG	1 cut(s)	303
XapI	RAATTY	4 cut(s)	224, 257, 364, 588
XbaI	TCTAGA	1 cut(s)	1036
XceI	RCATGY	1 cut(s)	1207
XmaJI	CCTAGG	1 cut(s)	1150
XspI	CTAG	5 cut(s)	302, 900, 1037, 1077, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.