Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010328

Physical Location & Seq

Genomic Coordinates Forward (+)

33458768 .. 33460755

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGTTATTAGTCTCTCCTCTTCTCCACCTTCTTCTCTGTCTCTGATCAAGTTAACCAATTCAAGGTCTGAGTTTCCTTCAAAACCCAAAACCCACCTCCCAAAGTGCTCATTTTCTTCATCAGACCTCAGCTTTCATTGCAAGGATCCATTTTTATCTCCAAAGGGTGGGAACCCAAATGGGACAAGGTTACAGTTGAGGTCTTGTGCACTTCCTGGTCTTGATTATAGCAACTTTGAGAGTGTTCAGTCAGTTTTGGAGGCAGCTGCAGTTTTAACAGCCATCATTGTTGTTCATGAAAGTGGTCATTTCCTTGCTGCTTATCTTCAGGGCATCCATGTAAGTAAATTTGCAGTTGGGTTTGGTCCTATTTTAGCTAAATTCAATGCCAACAATGTAGAGTATTCCATTAGAGCTTTTCCTCTAGGAGGGTTTGTGGGGTTTCCTGATAATGACCCCAATAGTGATATTCCAGTTGATGATGTAAATTTGCTCAAGAATAGGCCCATATTGGATAGAGTAATAGTGGTTTCAGCTGGTGTCATTGCCAACATCATTTTTGCCTATGCTATTATCTTTACTCAAGTCTTGTCAGTTGGTTTGCCTGTACAAGAGGGCTATCCTGGGGTTATTGTGCCCGAGGTAAGGCCCTTTTCTGCTGCTTCCCGAGACGGGTTACTTGCTGGTGATGTGATCCTTGAGGTTAATGGAATTCAGTTGCCAAAAGGAGGGCCTAATGCTGTCACAGAGGTTGTTGATGTGATTAAGAAAAATCCCAACAGAAATGTGGTTCTTAAGGTTGAGAGGGGAAAGCAGGATTTTGAGATTGGGGTCACCCCTGATGAGAATTATGATGGAACGGGAAAAATTGGAGTGCAGTTATCACCAAATGTTAAGATTTCGAAAGTTAAACCCAAAAATGTAGCGGACGCTTTTAATTATACAGGGAGAGAGTTCTGGGGCTTGTCGTTCAATGTATTGGATAGCTTAAAACAGACTTTTCTAAACTTCTCGCAGACAGCTAGTAAAGTTTCGGGTCCTGTTGCCATCATTGCTGTTGGTGCAGAAGTTGCAAGGTCGAATCTTGATGGACTGTATCAATTTGCTGCTTTGCTTAATCTTAATCTTGCAGTGATCAACCTCCTTCCCTTACCTGCTCTAGATGGAGGTACCTTGGCTTTTATACTTATAGAGGCTGCTAGGGGTGGGAGAAAACTCCCTATGGAAGTGGAACAGACGATTATGTCATCAGGGATAACGGTAGTTGTTTTTCTAGGATTGTTCCTTATTGTCCGGGACACACTTAATCTTGATTTCATCAGAGACATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Peptidase_M50

Protein Analysis

445

Amino Acids

47.61

Weight (kDa)

6.54

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50	PF02163	88 - 424	1.3e-57	Peptidase family M50
PDZ	PF00595	199 - 267	9.2e-07	PDZ domain
PDZ_2	PF13180	200 - 276	5.2e-08	PDZ domain
PDZ_6	PF17820	211 - 269	2.1e-09	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05140 AT2G32480 AT2G32480
fragaria_vesca	FvH4_6g43160 FvH4_6g43160
malus_domestica	MD09G1110000.v1.1
prunus_persica	Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1
pyrus_communis	pycom09g03250 pycom17g09350
rosa_chinensis	RchiOBHm_Chr2g0159081
rosa_laevigata	RLG00000021136
rosa_multiflora	Rmu_sc0003185.1_g000006
rosa_roxburghii	Rroxscaffold_2G00090800
rosa_rugosa	Rorug02G0473900
rosa_samantha	Rh2AG540700 Rh2BG553400 Rh2CG523800 Rh2DG563300
rosa_wichuraiana	Rw2G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1243
Acc36I	ACCTGC	1 cut(s)	1162
Acc65I	GGTACC	1 cut(s)	1169
AccB1I	GGYRCC	1 cut(s)	1169
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	1 cut(s)	926
AclWI	GGATC	3 cut(s)	140, 153, 688
AcsI	RAATTY	4 cut(s)	347, 380, 487, 711
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	609, 1171
AfiI	CCNNNNNNNGG	6 cut(s)	63, 167, 428, 645, 672, 728
AflII	CTTAAG	1 cut(s)	794
AflIII	ACRYGT	1 cut(s)	1326
AgsI	TTSAA	4 cut(s)	63, 81, 385, 973
AjnI	CCWGG	2 cut(s)	214, 622
AluBI	AGCT	7 cut(s)	132, 266, 377, 416, 536, 987, 1022
AluI	AGCT	7 cut(s)	132, 266, 377, 416, 536, 987, 1022
Alw21I	GWGCWC	2 cut(s)	110, 211
Alw26I	GTCTC	4 cut(s)	17, 45, 663, 1317
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	140, 153, 688
Ama87I	CYCGRG	2 cut(s)	638, 666
AoxI	GGCC	3 cut(s)	503, 647, 731
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	6 cut(s)	263, 266, 317, 659, 1106, 1196
ApoI	RAATTY	4 cut(s)	347, 380, 487, 711
Asp718I	GGTACC	1 cut(s)	1169
AspS9I	GGNCC	5 cut(s)	365, 504, 648, 731, 1037
AsuC2I	CCSGG	1 cut(s)	1295
AsuHPI	GGTGA	3 cut(s)	698, 826, 876
AsuII	TTCGAA	1 cut(s)	902
AvaI	CYCGRG	2 cut(s)	638, 666
AvaII	GGWCC	2 cut(s)	365, 1037
BaeGI	GKGCMC	2 cut(s)	211, 639
BamHI	GGATCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	1169
Bbv12I	GWGCWC	2 cut(s)	110, 211
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	6 cut(s)	253, 275, 304, 646, 1093, 1183
BccI	CCATC	5 cut(s)	290, 848, 1055, 1082, 1157
BciT130I	CCWGG	2 cut(s)	216, 624
BclI	TGATCA	2 cut(s)	45, 1134
BcnI	CCSGG	1 cut(s)	1295
BcoDI	GTCTC	4 cut(s)	17, 45, 663, 1317
BfaI	CTAG	5 cut(s)	425, 1023, 1160, 1200, 1274
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	1162
BisI	GCNGC	6 cut(s)	264, 267, 318, 660, 1107, 1197
BlsI	GCNGC	6 cut(s)	265, 268, 319, 661, 1108, 1198
Bme1390I	CCNGG	3 cut(s)	216, 624, 1295
Bme18I	GGWCC	2 cut(s)	365, 1037
BmeT110I	CYCGRG	2 cut(s)	638, 666
BmgT120I	GGNCC	5 cut(s)	365, 504, 648, 731, 1037
BmiI	GGNNCC	4 cut(s)	147, 173, 1038, 1171
BmrFI	CCNGG	3 cut(s)	216, 624, 1295
BmsI	GCATC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	902
BpuEI	CTTGAG	3 cut(s)	479, 567, 719
BpuMI	CCSGG	1 cut(s)	1295
BsaJI	CCNNGG	3 cut(s)	623, 639, 1173
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 167, 428, 645, 672, 728
Bse1I	ACTGG	1 cut(s)	473
Bse3DI	GCAATG	3 cut(s)	136, 543, 1050
BseBI	CCWGG	2 cut(s)	216, 624
BseDI	CCNNGG	3 cut(s)	623, 639, 1173
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	6 cut(s)	63, 167, 428, 645, 672, 728
BseMI	GCAATG	3 cut(s)	136, 543, 1050
BseMII	CTCAG	2 cut(s)	60, 142
BseNI	ACTGG	1 cut(s)	473
BseRI	GAGGAG	1 cut(s)	7
BseSI	GKGCMC	2 cut(s)	211, 639
BseXI	GCAGC	6 cut(s)	253, 275, 304, 646, 1093, 1183
BsgI	GTGCAG	2 cut(s)	896, 1083
BshFI	GGCC	3 cut(s)	505, 649, 733
BshNI	GGYRCC	1 cut(s)	1169
BsiHKAI	GWGCWC	2 cut(s)	110, 211
BsiHKCI	CYCGRG	2 cut(s)	638, 666
BsiSI	CCGG	1 cut(s)	1294
BslFI	GGGAC	2 cut(s)	196, 1310
BslI	CCNNNNNNNGG	6 cut(s)	63, 167, 428, 645, 672, 728
BsmAI	GTCTC	4 cut(s)	17, 45, 663, 1317
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	2 cut(s)	196, 1310
BsnI	GGCC	3 cut(s)	505, 649, 733
BsoBI	CYCGRG	2 cut(s)	638, 666
Bsp119I	TTCGAA	1 cut(s)	902
Bsp1286I	GDGCHC	3 cut(s)	110, 211, 639
Bsp1407I	TGTACA	1 cut(s)	607
Bsp143I	GATC	4 cut(s)	45, 145, 693, 1134
BspACI	CCGC	1 cut(s)	926
BspANI	GGCC	3 cut(s)	505, 649, 733
BspCNI	CTCAG	2 cut(s)	61, 141
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	4 cut(s)	147, 173, 1038, 1171
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	1162
BspPI	GGATC	3 cut(s)	140, 153, 688
BspT104I	TTCGAA	1 cut(s)	902
BspT107I	GGYRCC	1 cut(s)	1169
BspTI	CTTAAG	1 cut(s)	794
BsrDI	GCAATG	3 cut(s)	136, 543, 1050
BsrGI	TGTACA	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	473
BssECI	CCNNGG	3 cut(s)	623, 639, 1173
BssMI	GATC	4 cut(s)	45, 145, 693, 1134
BssT1I	CCWWGG	1 cut(s)	1173
Bst2UI	CCWGG	2 cut(s)	216, 624
Bst4CI	ACNGT	3 cut(s)	195, 1095, 1261
Bst6I	CTCTTC	1 cut(s)	25
BstAFI	CTTAAG	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstAUI	TGTACA	1 cut(s)	607
BstBI	TTCGAA	1 cut(s)	902
BstDEI	CTNAG	2 cut(s)	69, 128
BstEII	GGTNACC	1 cut(s)	832
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	4 cut(s)	48, 148, 696, 1137
BstMAI	GTCTC	4 cut(s)	17, 45, 663, 1317
BstMBI	GATC	4 cut(s)	45, 145, 693, 1134
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 1052, 1061, 1070
BstNI	CCWGG	2 cut(s)	216, 624
BstNSI	RCATGY	1 cut(s)	1330
BstPI	GGTNACC	1 cut(s)	832
BstSCI	CCNGG	3 cut(s)	214, 622, 1293
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	2 cut(s)	211, 639
BstV1I	GCAGC	6 cut(s)	253, 275, 304, 646, 1093, 1183
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	505, 649, 733
BtsCI	GGATG	1 cut(s)	333
BtsI	GCAGTG	1 cut(s)	1137
BtsIMutI	CAGTG	1 cut(s)	1137
BveI	ACCTGC	1 cut(s)	1162
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	5 cut(s)	365, 504, 648, 731, 1037
CseI	GACGC	1 cut(s)	938
Csp6I	GTAC	2 cut(s)	608, 1170
CviAII	CATG	3 cut(s)	296, 338, 1327
CviQI	GTAC	2 cut(s)	608, 1170
DdeI	CTNAG	2 cut(s)	69, 128
DpnI	GATC	4 cut(s)	47, 147, 695, 1136
DpnII	GATC	4 cut(s)	45, 145, 693, 1134
DrdI	GACNNNNNNGTC	1 cut(s)	1243
DseDI	GACNNNNNNGTC	1 cut(s)	1243
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	1173
Eco47I	GGWCC	2 cut(s)	365, 1037
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	2 cut(s)	638, 666
Eco91I	GGTNACC	1 cut(s)	832
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO109I	RGGNCCY	3 cut(s)	648, 731, 1037
EcoO65I	GGTNACC	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	711
EcoRII	CCWGG	2 cut(s)	214, 622
EcoT14I	CCWWGG	1 cut(s)	1173
ErhI	CCWWGG	1 cut(s)	1173
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	3 cut(s)	299, 341, 1330
FaqI	GGGAC	2 cut(s)	196, 1310
FatI	CATG	3 cut(s)	295, 337, 1326
FbaI	TGATCA	2 cut(s)	45, 1134
Fnu4HI	GCNGC	6 cut(s)	264, 267, 318, 660, 1107, 1197
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	6 cut(s)	264, 267, 318, 660, 1107, 1197
FspBI	CTAG	5 cut(s)	425, 1023, 1160, 1200, 1274
GluI	GCNGC	6 cut(s)	264, 267, 318, 660, 1107, 1197
HaeIII	GGCC	3 cut(s)	505, 649, 733
HapII	CCGG	1 cut(s)	1294
HgaI	GACGC	1 cut(s)	938
Hin1II	CATG	3 cut(s)	299, 341, 1330
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	1081
HpaI	GTTAAC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	1294
HphI	GGTGA	3 cut(s)	698, 826, 876
Hpy166II	GTNNAC	2 cut(s)	54, 209
Hpy188I	TCNGA	4 cut(s)	45, 70, 124, 1322
Hpy188III	TCNNGA	8 cut(s)	221, 296, 446, 496, 666, 1085, 1160, 1310
Hpy8I	GTNNAC	2 cut(s)	54, 209
HpyAV	CCTTC	3 cut(s)	39, 87, 1154
HpyCH4III	ACNGT	3 cut(s)	195, 1095, 1261
HpyCH4V	TGCA	8 cut(s)	141, 209, 269, 353, 877, 1064, 1073, 1130
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 1052, 1061, 1070
HpyF3I	CTNAG	2 cut(s)	69, 128
Hsp92II	CATG	3 cut(s)	299, 341, 1330
KpnI	GGTACC	1 cut(s)	1173
Ksp22I	TGATCA	2 cut(s)	45, 1134
KspAI	GTTAAC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	45, 145, 693, 1134
Lsp1109I	GCAGC	6 cut(s)	253, 275, 304, 646, 1093, 1183
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	5 cut(s)	425, 1023, 1160, 1200, 1274
MaeIII	GTNAC	4 cut(s)	189, 675, 742, 832
MalI	GATC	4 cut(s)	47, 147, 695, 1136
MboI	GATC	4 cut(s)	45, 145, 693, 1134
MboII	GAAGA	4 cut(s)	12, 24, 108, 317
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	3 cut(s)	110, 211, 639
MluCI	AATT	9 cut(s)	58, 347, 380, 487, 711, 847, 867, 937, 1100
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	266, 536
MspCI	CTTAAG	1 cut(s)	794
MspI	CCGG	1 cut(s)	1294
MspR9I	CCNGG	3 cut(s)	216, 624, 1295
MvaI	CCWGG	2 cut(s)	216, 624
MwoI	GCNNNNNNNGC	4 cut(s)	138, 1052, 1061, 1070
NciI	CCSGG	1 cut(s)	1295
NdeII	GATC	4 cut(s)	45, 145, 693, 1134
NlaIII	CATG	3 cut(s)	299, 341, 1330
NlaIV	GGNNCC	4 cut(s)	147, 173, 1038, 1171
NmuCI	GTSAC	2 cut(s)	742, 832
NspI	RCATGY	1 cut(s)	1330
NspV	TTCGAA	1 cut(s)	902
PagI	TCATGA	1 cut(s)	295
PciI	ACATGT	1 cut(s)	1326
PfeI	GAWTC	1 cut(s)	1081
PflMI	CCANNNNNTGG	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	1293
PkrI	GCNGC	6 cut(s)	265, 268, 319, 661, 1108, 1198
PpuMI	RGGWCCY	1 cut(s)	1037
PscI	ACATGT	1 cut(s)	1326
Psp5II	RGGWCCY	1 cut(s)	1037
Psp6I	CCWGG	2 cut(s)	214, 622
PspEI	GGTNACC	1 cut(s)	832
PspGI	CCWGG	2 cut(s)	214, 622
PspN4I	GGNNCC	4 cut(s)	147, 173, 1038, 1171
PspPI	GGNCC	5 cut(s)	365, 504, 648, 731, 1037
PspPPI	RGGWCCY	1 cut(s)	1037
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	2 cut(s)	266, 536
RsaI	GTAC	2 cut(s)	609, 1171
RsaNI	GTAC	2 cut(s)	608, 1170
RseI	CAYNNNNRTG	1 cut(s)	300
SatI	GCNGC	6 cut(s)	264, 267, 318, 660, 1107, 1197
Sau3AI	GATC	4 cut(s)	45, 145, 693, 1134
Sau96I	GGNCC	5 cut(s)	365, 504, 648, 731, 1037
ScrFI	CCNGG	3 cut(s)	216, 624, 1295
SduI	GDGCHC	3 cut(s)	110, 211, 639
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	902
SinI	GGWCC	2 cut(s)	365, 1037
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	4 cut(s)	494, 582, 698, 794
SmoI	CTYRAG	4 cut(s)	494, 582, 698, 794
Sse9I	AATT	9 cut(s)	58, 347, 380, 487, 711, 847, 867, 937, 1100
SsiI	CCGC	1 cut(s)	926
SspMI	CTAG	5 cut(s)	425, 1023, 1160, 1200, 1274
StyD4I	CCNGG	3 cut(s)	214, 622, 1293
StyI	CCWWGG	1 cut(s)	1173
TaaI	ACNGT	3 cut(s)	195, 1095, 1261
TaqI	TCGA	2 cut(s)	902, 1079
TasI	AATT	9 cut(s)	58, 347, 380, 487, 711, 847, 867, 937, 1100
TatI	WGTACW	1 cut(s)	607
TfiI	GAWTC	1 cut(s)	1081
TscAI	CASTG	1 cut(s)	1137
TseFI	GTSAC	2 cut(s)	742, 832
TseI	GCWGC	6 cut(s)	263, 266, 317, 659, 1106, 1196
Tsp45I	GTSAC	2 cut(s)	742, 832
TspDTI	ATGAA	5 cut(s)	108, 125, 284, 312, 1306
TspRI	CASTG	1 cut(s)	1137
Van91I	CCANNNNNTGG	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	794
VneI	GTGCAC	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	365, 1037
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	4 cut(s)	347, 380, 487, 711
XbaI	TCTAGA	1 cut(s)	1159
XceI	RCATGY	1 cut(s)	1330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	784
XspI	CTAG	5 cut(s)	425, 1023, 1160, 1200, 1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.