Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010328

Physical Location & Seq

Genomic Coordinates Forward (+)

21874984 .. 21878313

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G216500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGTCATTAGCCTCTCATCTTCTTTGTCTTTCATCAACTTAACCAATTCCAAGTCACCCATCTCTGAGTTTCCATCAAAACCCAAAACCCACCTCCCAAAATCTCTGTCTTCCACCGTATGCTGTTCGTTTTCTTCATCAGACCTTGGTTTTCAATGCAAGGAACCGTTTTTCTTTCAAAAAGGTAGGTACCCACATGGAAGACGGTTCAAGTTCACGTCTTGTGCAATTCCCGGGTTTGATTATGGAAACTTTGAGAGTGCCCAGTCTGTGTTGGAGGCAGCTGCTGTGTTAACGGCCATAATTGTTGTTCATGAGAGTGGTCACTTCCTTGCTGCTTATCTTCAAGGCATTCATGTGAGTAAATTTGCAGTTGGTTTTGGTCCAATTTTAGCTAAATTCAATGCAAACAATGTAGAGTATTCTCTTAGAGCTTTTCCTCTAGGTGGATTTGTGGGATTTCCTGATAATGATCCAGACAGTGATATTCCAGTTGATGATAAAAATTTGCTTAAGAATAGGCCAATATTGGATAGAGCTATAGTGGTTTCAGCTGGTGTAGTTGCCAATATCATTTTTGCATACCTTATAATCTTTACTCAAGTCTTGTCAGTTGGTTTGCCTGTACAAGAGGCCTATCCAGGGGTGCTTGTGCCCGAGGTTCGACCCTTTTCAGCAGCTTCCCGAGACGGGTTGCTTCCGGGGGATGTGATCCTTGAGGTTAATGGAATTGAATTGCCAAAAGGAGGGCCTAATGGTGTTTCAGAGATTGTTGATGTAATTAAGCAGAATGCCAAAAGAAATGTGGTTCTTAAGGTTGAGAGGGGACAACAGGACTTTGAAATTGGGATCATCCCTGATGAGAATTATGATGGAACAGGCAAAATTGGAGTACAATTGTCACCAAATGTCAGGTTCACAAAAGTAAAACCCAAAAGTATTCCGGATGCTTTTAATTATACTGGGAGAGAGTTTTGGGGCTTGTCATCTAATGTGTTGGATAGCTTAAAACAGACTTTTCTAAACTTCTCTCAGACAGCTGGTAAAGTTGCAGGTCCAGTTGCCATTATCGCTGTTGGTGCAGAAGTTGCAAGGTCGAATGTCGATGGACTCTATCAGTTTGCAGCCTTGCTTAATCTTAACCTTGCAATAATTAACCTTCTTCCTCTACCTGCTTTAGATGGAGGTACCTTGGCTTTCATCCTCATAGAGGCTGCTAGGGGTGGGAGAAAGCTTCCTCTAGAAGTGGAGCAGGGGATTATGTCATCAGGGATAACGGTTGTTATTTTTGTAGGATTGTTCCTTATTGTTCGGGACACACTTAATCTTGATTTTATCAAGGACATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Peptidase_M50

Protein Analysis

451

Amino Acids

48.49

Weight (kDa)

6.25

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05140 AT2G32480 AT2G32480
fragaria_vesca	FvH4_6g43160 FvH4_6g43160
malus_domestica	MD09G1110000.v1.1
prunus_persica	Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1 Prupe.3G216500_v2.0.a1
pyrus_communis	pycom09g03250 pycom17g09350
rosa_chinensis	RchiOBHm_Chr2g0159081
rosa_laevigata	RLG00000021136
rosa_multiflora	Rmu_sc0003185.1_g000006
rosa_roxburghii	Rroxscaffold_2G00090800
rosa_rugosa	Rorug02G0473900
rosa_samantha	Rh2AG540700 Rh2BG553400 Rh2CG523800 Rh2DG563300
rosa_wichuraiana	Rw2G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
Acc36I	ACCTGC	2 cut(s)	1043, 1180
Acc65I	GGTACC	2 cut(s)	189, 1187
AccB1I	GGYRCC	2 cut(s)	189, 1187
AccIII	TCCGGA	1 cut(s)	943
AclWI	GGATC	3 cut(s)	467, 706, 857
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	3 cut(s)	365, 398, 505
AfaI	GTAC	4 cut(s)	191, 627, 894, 1189
AfiI	CCNNNNNNNGG	5 cut(s)	446, 642, 690, 746, 1210
AflII	CTTAAG	2 cut(s)	512, 812
AflIII	ACRYGT	1 cut(s)	1344
AgsI	TTSAA	7 cut(s)	155, 179, 211, 347, 403, 734, 842
AjiI	CACGTC	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	9 cut(s)	284, 395, 434, 539, 554, 680, 1005, 1040, 1234
AluI	AGCT	9 cut(s)	284, 395, 434, 539, 554, 680, 1005, 1040, 1234
Alw26I	GTCTC	1 cut(s)	681
AlwI	GGATC	3 cut(s)	467, 706, 857
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	3 cut(s)	233, 656, 684
Aor13HI	TCCGGA	1 cut(s)	943
AoxI	GGCC	4 cut(s)	297, 521, 633, 749
ApeKI	GCWGC	6 cut(s)	281, 284, 335, 677, 1124, 1214
ApoI	RAATTY	3 cut(s)	365, 398, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp718I	GGTACC	2 cut(s)	189, 1187
AspS9I	GGNCC	3 cut(s)	383, 749, 1055
AsuC2I	CCSGG	3 cut(s)	234, 235, 702
AsuHPI	GGTGA	2 cut(s)	48, 894
AvaI	CYCGRG	3 cut(s)	233, 656, 684
AvaII	GGWCC	2 cut(s)	383, 1055
BaeGI	GKGCMC	2 cut(s)	265, 657
BanI	GGYRCC	2 cut(s)	189, 1187
BbsI	GAAGAC	2 cut(s)	102, 208
BbvI	GCAGC	6 cut(s)	271, 293, 322, 689, 1136, 1201
BccI	CCATC	5 cut(s)	68, 82, 866, 1100, 1175
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	642
BcnI	CCSGG	3 cut(s)	234, 235, 702
BcoDI	GTCTC	1 cut(s)	681
BfaI	CTAG	3 cut(s)	443, 1218, 1241
BfmI	CTRYAG	1 cut(s)	540
BfrI	CTTAAG	2 cut(s)	512, 812
BfuAI	ACCTGC	2 cut(s)	1043, 1180
BisI	GCNGC	6 cut(s)	282, 285, 336, 678, 1125, 1215
BlsI	GCNGC	6 cut(s)	283, 286, 337, 679, 1126, 1216
Bme1390I	CCNGG	4 cut(s)	234, 235, 642, 702
Bme18I	GGWCC	2 cut(s)	383, 1055
BmeT110I	CYCGRG	3 cut(s)	233, 656, 684
BmgBI	CACGTC	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	383, 749, 1055
BmiI	GGNNCC	3 cut(s)	165, 191, 1189
BmrFI	CCNGG	4 cut(s)	234, 235, 642, 702
BmrI	ACTGGG	2 cut(s)	259, 972
BmsI	GCATC	1 cut(s)	937
BmuI	ACTGGG	2 cut(s)	259, 972
BpiI	GAAGAC	2 cut(s)	102, 208
BpuEI	CTTGAG	2 cut(s)	585, 737
BpuMI	CCSGG	3 cut(s)	234, 235, 702
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	6 cut(s)	145, 233, 641, 657, 701, 1191
BsaWI	WCCGGW	1 cut(s)	943
Bsc4I	CCNNNNNNNGG	5 cut(s)	446, 642, 690, 746, 1210
Bse1I	ACTGG	4 cut(s)	265, 491, 967, 1058
Bse8I	GATNNNNATC	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	943
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	6 cut(s)	145, 233, 641, 657, 701, 1191
BseGI	GGATG	4 cut(s)	712, 852, 952, 1200
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	5 cut(s)	446, 642, 690, 746, 1210
BseMII	CTCAG	2 cut(s)	57, 1046
BseNI	ACTGG	4 cut(s)	265, 491, 967, 1058
BseSI	GKGCMC	2 cut(s)	265, 657
BseXI	GCAGC	6 cut(s)	271, 293, 322, 689, 1136, 1201
BsgI	GTGCAG	1 cut(s)	1101
BshFI	GGCC	4 cut(s)	299, 523, 635, 751
BshNI	GGYRCC	2 cut(s)	189, 1187
BsiHKCI	CYCGRG	3 cut(s)	233, 656, 684
BsiSI	CCGG	3 cut(s)	234, 701, 944
BslFI	GGGAC	2 cut(s)	840, 1328
BslI	CCNNNNNNNGG	5 cut(s)	446, 642, 690, 746, 1210
BsmAI	GTCTC	1 cut(s)	681
BsmBI	CGTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	840, 1328
BsmI	GAATGC	2 cut(s)	351, 796
BsnI	GGCC	4 cut(s)	299, 523, 635, 751
BsoBI	CYCGRG	3 cut(s)	233, 656, 684
Bsp1286I	GDGCHC	2 cut(s)	265, 657
Bsp13I	TCCGGA	1 cut(s)	943
Bsp1407I	TGTACA	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	472, 711, 849
BspANI	GGCC	4 cut(s)	299, 523, 635, 751
BspCNI	CTCAG	2 cut(s)	58, 1045
BspEI	TCCGGA	1 cut(s)	943
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	165, 191, 1189
BspMI	ACCTGC	2 cut(s)	1043, 1180
BspPI	GGATC	3 cut(s)	467, 706, 857
BspT107I	GGYRCC	2 cut(s)	189, 1187
BspTI	CTTAAG	2 cut(s)	512, 812
BsrGI	TGTACA	1 cut(s)	625
BsrI	ACTGG	4 cut(s)	265, 491, 967, 1058
BssECI	CCNNGG	6 cut(s)	145, 233, 641, 657, 701, 1191
BssMI	GATC	3 cut(s)	472, 711, 849
BssT1I	CCWWGG	2 cut(s)	145, 1191
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	5 cut(s)	118, 168, 207, 482, 1279
BstAFI	CTTAAG	2 cut(s)	512, 812
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstAUI	TGTACA	1 cut(s)	625
BstDEI	CTNAG	3 cut(s)	66, 428, 1032
BstENI	CCTNNNNNAGG	1 cut(s)	1208
BstF5I	GGATG	4 cut(s)	712, 852, 952, 1200
BstKTI	GATC	3 cut(s)	475, 714, 852
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	3 cut(s)	472, 711, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	1070, 1079, 1088
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	1 cut(s)	1348
BstSCI	CCNGG	4 cut(s)	232, 233, 640, 700
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	2 cut(s)	265, 657
BstV1I	GCAGC	6 cut(s)	271, 293, 322, 689, 1136, 1201
BstV2I	GAAGAC	2 cut(s)	102, 208
BsuRI	GGCC	4 cut(s)	299, 523, 635, 751
BtrI	CACGTC	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	712, 852, 952, 1200
BtsIMutI	CAGTG	1 cut(s)	487
BveI	ACCTGC	2 cut(s)	1043, 1180
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	313
Cfr13I	GGNCC	3 cut(s)	383, 749, 1055
Cfr9I	CCCGGG	1 cut(s)	233
Csp6I	GTAC	4 cut(s)	190, 626, 893, 1188
CviAII	CATG	4 cut(s)	197, 314, 356, 1345
CviQI	GTAC	4 cut(s)	190, 626, 893, 1188
DdeI	CTNAG	3 cut(s)	66, 428, 1032
DpnI	GATC	3 cut(s)	474, 713, 851
DpnII	GATC	3 cut(s)	472, 711, 849
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	145, 1191
Eco147I	AGGCCT	1 cut(s)	635
Eco47I	GGWCC	2 cut(s)	383, 1055
Eco88I	CYCGRG	3 cut(s)	233, 656, 684
EcoNI	CCTNNNNNAGG	1 cut(s)	1208
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	640
EcoT14I	CCWWGG	2 cut(s)	145, 1191
ErhI	CCWWGG	2 cut(s)	145, 1191
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	4 cut(s)	200, 317, 359, 1348
FaqI	GGGAC	2 cut(s)	840, 1328
FatI	CATG	4 cut(s)	196, 313, 355, 1344
Fnu4HI	GCNGC	6 cut(s)	282, 285, 336, 678, 1125, 1215
FokI	GGATG	4 cut(s)	719, 839, 959, 1187
Fsp4HI	GCNGC	6 cut(s)	282, 285, 336, 678, 1125, 1215
FspBI	CTAG	3 cut(s)	443, 1218, 1241
GluI	GCNGC	6 cut(s)	282, 285, 336, 678, 1125, 1215
HaeIII	GGCC	4 cut(s)	299, 523, 635, 751
HapII	CCGG	3 cut(s)	234, 701, 944
Hin1II	CATG	4 cut(s)	200, 317, 359, 1348
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	1232
HinfI	GANTC	1 cut(s)	1110
HpaI	GTTAAC	1 cut(s)	294
HpaII	CCGG	3 cut(s)	234, 701, 944
HphI	GGTGA	2 cut(s)	48, 894
Hpy166II	GTNNAC	3 cut(s)	216, 294, 918
Hpy188I	TCNGA	4 cut(s)	67, 142, 766, 1035
Hpy188III	TCNNGA	8 cut(s)	314, 464, 476, 684, 944, 1241, 1313, 1328
Hpy8I	GTNNAC	3 cut(s)	216, 294, 918
HpyAV	CCTTC	1 cut(s)	1169
HpyCH4III	ACNGT	5 cut(s)	118, 168, 207, 482, 1279
HpyCH4IV	ACGT	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1070, 1079, 1088
HpyF3I	CTNAG	3 cut(s)	66, 428, 1032
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	200, 317, 359, 1348
Kpn2I	TCCGGA	1 cut(s)	943
KpnI	GGTACC	2 cut(s)	193, 1191
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	472, 711, 849
LmnI	GCTCC	1 cut(s)	1249
Lsp1109I	GCAGC	6 cut(s)	271, 293, 322, 689, 1136, 1201
LweI	GCATC	1 cut(s)	937
MaeI	CTAG	3 cut(s)	443, 1218, 1241
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	54, 323, 900
MalI	GATC	3 cut(s)	474, 713, 851
MboI	GATC	3 cut(s)	472, 711, 849
MboII	GAAGA	6 cut(s)	12, 102, 126, 213, 335, 1154
MfeI	CAATTG	1 cut(s)	896
MhlI	GDGCHC	2 cut(s)	265, 657
MlyI	GAGTC	1 cut(s)	1104
MmeI	TCCRAC	2 cut(s)	255, 978
MroI	TCCGGA	1 cut(s)	943
MslI	CAYNNNNRTG	2 cut(s)	318, 356
MspA1I	CMGCKG	3 cut(s)	284, 554, 1040
MspCI	CTTAAG	2 cut(s)	512, 812
MspI	CCGG	3 cut(s)	234, 701, 944
MspR9I	CCNGG	4 cut(s)	234, 235, 642, 702
MunI	CAATTG	1 cut(s)	896
Mva1269I	GAATGC	2 cut(s)	351, 796
MvaI	CCWGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	1070, 1079, 1088
NciI	CCSGG	3 cut(s)	234, 235, 702
NdeII	GATC	3 cut(s)	472, 711, 849
NlaIII	CATG	4 cut(s)	200, 317, 359, 1348
NlaIV	GGNNCC	3 cut(s)	165, 191, 1189
NmuCI	GTSAC	3 cut(s)	54, 323, 900
NspI	RCATGY	1 cut(s)	1348
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	635
PciI	ACATGT	1 cut(s)	1344
PctI	GAATGC	2 cut(s)	351, 796
PkrI	GCNGC	6 cut(s)	283, 286, 337, 679, 1126, 1216
PleI	GAGTC	1 cut(s)	1104
PpsI	GAGTC	1 cut(s)	1104
PscI	ACATGT	1 cut(s)	1344
PsiI	TTATAA	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	165, 191, 1189
PspPI	GGNCC	3 cut(s)	383, 749, 1055
PstNI	CAGNNNCTG	1 cut(s)	287
PvuII	CAGCTG	3 cut(s)	284, 554, 1040
RsaI	GTAC	4 cut(s)	191, 627, 894, 1189
RsaNI	GTAC	4 cut(s)	190, 626, 893, 1188
RseI	CAYNNNNRTG	2 cut(s)	318, 356
SatI	GCNGC	6 cut(s)	282, 285, 336, 678, 1125, 1215
Sau3AI	GATC	3 cut(s)	472, 711, 849
Sau96I	GGNCC	3 cut(s)	383, 749, 1055
SchI	GAGTC	1 cut(s)	1104
ScrFI	CCNGG	4 cut(s)	234, 235, 642, 702
SduI	GDGCHC	2 cut(s)	265, 657
SfaNI	GCATC	1 cut(s)	937
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	2 cut(s)	383, 1055
SmaI	CCCGGG	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	318, 356
SmlI	CTYRAG	4 cut(s)	512, 600, 716, 812
SmoI	CTYRAG	4 cut(s)	512, 600, 716, 812
SseBI	AGGCCT	1 cut(s)	635
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	3 cut(s)	443, 1218, 1241
StuI	AGGCCT	1 cut(s)	635
StyD4I	CCNGG	4 cut(s)	232, 233, 640, 700
StyI	CCWWGG	2 cut(s)	145, 1191
TaaI	ACNGT	5 cut(s)	118, 168, 207, 482, 1279
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	3 cut(s)	664, 1097, 1104
TatI	WGTACW	2 cut(s)	625, 892
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	3 cut(s)	54, 323, 900
TseI	GCWGC	6 cut(s)	281, 284, 335, 677, 1124, 1214
Tsp45I	GTSAC	3 cut(s)	54, 323, 900
TspDTI	ATGAA	5 cut(s)	22, 126, 302, 344, 1189
TspMI	CCCGGG	1 cut(s)	233
TspRI	CASTG	1 cut(s)	487
Vha464I	CTTAAG	2 cut(s)	512, 812
VpaK11BI	GGWCC	2 cut(s)	383, 1055
XagI	CCTNNNNNAGG	1 cut(s)	1208
XapI	RAATTY	3 cut(s)	365, 398, 505
XbaI	TCTAGA	1 cut(s)	1240
XceI	RCATGY	1 cut(s)	1348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XmaI	CCCGGG	1 cut(s)	233
XspI	CTAG	3 cut(s)	443, 1218, 1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.