Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008222

Physical Location & Seq

Genomic Coordinates Forward (+)

1529767 .. 1531484

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAATTGCTTGATAGCTATAGCTCTTTCAGTCTCTTTCTTTCTTGTGGGAATTGTTGGACCGATCCAAGCTCAATTGCAGATGAATTTCTATGCCAATTCTTGTCCTAATGCTGAAAAGATTGTTCAAGATTTTGTTTCAAACCACGTTTCTAATGCTCCTTCTCTTGCTGCTGCTCTCATTAGAATGCATTTCCATGACTGTTTTGTCCGAGGTTGTGATGGATCAGTGCTTATAAACTCAACGTCAGGAAACGCAGAGAGAGACGCGACTCCTAACCTAACGGTTCGAGGGTTTGGCTTCATCGACGCAATTAAATCTGTGCTTGAAGCTCAATGCCCTGGAATTGTCTCTTGCGCTGATATTATCGCTCTAGCTTCTCGCGACGCTGTCGTTTTCACCGGAGGACCGAATTGGAGTGTACCGACCGGAAGAAGAGACGGGAGGATATCAAACGCAGCGGAGGCATTAGCCAACATTCCTCCTCCAACCAGTAATATCACCAATCTTCAGACACTCTTTGCAAACCAAGGACTTGATCTTAAGGACCTCGTTTTACTATCCGGGGCTCACACTATTGGTGTATCTCACTGCTCGTCTTTCACAAACCGTCTCTACAATTTTACGGGTCGTGGAGGCCAAGATCCGGCTTTGGACAGCGAGTACGCAGCCAATCTCAAGTCTAGAAAATGTCCTAGCCTCAACGATAACAAGACCATCGTAGAGATGGATCCAGGGAGCCGCAAAACATTTGATCTAAGTTATTACCAGCTCGTACTCAAGCGTAGAGGTCTGTTTCAATCAGACTCTGCTCTCACCACTAACCCCACAACACTTTCAAACATAAACCGGATCTTGACGGGTTCGGTGGGGAGTTTCTTCTCTGAGTTTGCCAAGTCAATGGAGAAAATGGGTCGGATCAATGTCAAGACTGGTTCAGCTGGAGTGGTTAGGAGGCAATGTTCCGTTGCAAATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

34.91

Weight (kDa)

8.74

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 283	3.1e-84	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05260
fragaria_vesca	FvH4_6g43500 FvH4_6g43500
malus_domestica	MD09G1105900.v1.1 MD17G1092400.v1.1 MD17G1093600.v1.1
prunus_persica	Prupe.3G219700_v2.0.a1
pyrus_communis	pycom09g02850 pycom17g08950 pycom17g09070
rosa_chinensis	RchiOBHm_Chr2g0160001
rosa_laevigata	RLG00000021191
rosa_multiflora	Rmu_sc0002023.1_g000018 Rmu_sc0006940.1_g000001 Rmu_sc0029076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090100
rosa_rugosa	Rorug02G0479600 Rorug02G0479700
rosa_samantha	Rh2AG546300 Rh2BG559600 Rh2CG529700 Rh2DG568300
rosa_wichuraiana	Rw2G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AasI	GACNNNNNNGTC	1 cut(s)	206
AccII	CGCG	2 cut(s)	269, 384
AciI	CCGC	2 cut(s)	461, 742
AclWI	GGATC	7 cut(s)	58, 232, 638, 725, 738, 860, 926
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	423, 665, 777
AfiI	CCNNNNNNNGG	1 cut(s)	646
AflII	CTTAAG	1 cut(s)	542
AgsI	TTSAA	5 cut(s)	128, 141, 329, 800, 840
AjnI	CCWGG	2 cut(s)	340, 733
AloI	GAACNNNNNNTCC	2 cut(s)	946, 978
AluBI	AGCT	7 cut(s)	17, 23, 71, 332, 377, 772, 941
AluI	AGCT	7 cut(s)	17, 23, 71, 332, 377, 772, 941
Alw26I	GTCTC	5 cut(s)	37, 258, 355, 432, 617
AlwI	GGATC	7 cut(s)	58, 232, 638, 725, 738, 860, 926
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	4 cut(s)	170, 173, 458, 668
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	59, 407, 547
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	3 cut(s)	391, 493, 808
AvaII	GGWCC	3 cut(s)	59, 407, 547
BamHI	GGATCC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	571
BbvI	GCAGC	4 cut(s)	157, 160, 470, 680
BccI	CCATC	3 cut(s)	215, 721, 725
BciT130I	CCWGG	2 cut(s)	342, 735
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	5 cut(s)	37, 258, 355, 432, 617
BfaI	CTAG	3 cut(s)	374, 684, 696
BfmI	CTRYAG	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	542
BisI	GCNGC	5 cut(s)	171, 174, 459, 669, 742
BlsI	GCNGC	5 cut(s)	172, 175, 460, 670, 743
Bme1390I	CCNGG	3 cut(s)	342, 565, 735
Bme18I	GGWCC	3 cut(s)	59, 407, 547
BmgT120I	GGNCC	3 cut(s)	59, 407, 547
BmiI	GGNNCC	2 cut(s)	732, 740
BmrFI	CCNGG	3 cut(s)	342, 565, 735
BpmI	CTGGAG	1 cut(s)	963
BpuEI	CTTGAG	2 cut(s)	662, 764
BpuMI	CCSGG	1 cut(s)	565
BsaJI	CCNNGG	5 cut(s)	211, 340, 529, 564, 734
BsaWI	WCCGGW	3 cut(s)	401, 428, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	946, 976
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse1I	ACTGG	2 cut(s)	492, 937
Bse3DI	GCAATG	1 cut(s)	965
BseBI	CCWGG	2 cut(s)	342, 735
BseDI	CCNNGG	5 cut(s)	211, 340, 529, 564, 734
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMI	GCAATG	1 cut(s)	965
BseMII	CTCAG	1 cut(s)	876
BseNI	ACTGG	2 cut(s)	492, 937
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	4 cut(s)	157, 160, 470, 680
Bsh1236I	CGCG	2 cut(s)	269, 384
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	639
BsiEI	CGRYCG	1 cut(s)	429
BsiSI	CCGG	5 cut(s)	402, 429, 564, 647, 850
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	5 cut(s)	37, 258, 355, 432, 617
BsmBI	CGTCTC	3 cut(s)	258, 432, 617
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	8 cut(s)	63, 224, 538, 643, 730, 754, 852, 918
Bsp68I	TCGCGA	1 cut(s)	384
BspACI	CCGC	2 cut(s)	461, 742
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	877
BspFNI	CGCG	2 cut(s)	269, 384
BspLI	GGNNCC	2 cut(s)	732, 740
BspPI	GGATC	7 cut(s)	58, 232, 638, 725, 738, 860, 926
BspTI	CTTAAG	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	965
BsrI	ACTGG	2 cut(s)	492, 937
BssECI	CCNNGG	5 cut(s)	211, 340, 529, 564, 734
BssMI	GATC	8 cut(s)	63, 224, 538, 643, 730, 754, 852, 918
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	2 cut(s)	342, 735
Bst4CI	ACNGT	3 cut(s)	203, 286, 611
Bst6I	CTCTTC	1 cut(s)	430
BstAFI	CTTAAG	1 cut(s)	542
BstDEI	CTNAG	2 cut(s)	758, 885
BstFNI	CGCG	2 cut(s)	269, 384
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	8 cut(s)	66, 227, 541, 646, 733, 757, 855, 921
BstMAI	GTCTC	5 cut(s)	37, 258, 355, 432, 617
BstMBI	GATC	8 cut(s)	63, 224, 538, 643, 730, 754, 852, 918
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	2 cut(s)	342, 735
BstSCI	CCNGG	3 cut(s)	340, 563, 733
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	2 cut(s)	269, 384
BstV1I	GCAGC	4 cut(s)	157, 160, 470, 680
BstX2I	RGATCY	3 cut(s)	643, 730, 852
BstXI	CCANNNNNNTGG	1 cut(s)	901
BstYI	RGATCY	3 cut(s)	643, 730, 852
BsuRI	GGCC	1 cut(s)	639
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	2 cut(s)	234, 589
BtuMI	TCGCGA	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	59, 407, 547
CseI	GACGC	3 cut(s)	275, 317, 395
Csp6I	GTAC	3 cut(s)	422, 664, 776
CviAII	CATG	1 cut(s)	197
CviQI	GTAC	3 cut(s)	422, 664, 776
DdeI	CTNAG	2 cut(s)	758, 885
DpnI	GATC	8 cut(s)	65, 226, 540, 645, 732, 756, 854, 920
DpnII	GATC	8 cut(s)	63, 224, 538, 643, 730, 754, 852, 918
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	571
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	3 cut(s)	59, 407, 547
Eco57I	CTGAAG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	340, 733
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	529
Esp3I	CGTCTC	3 cut(s)	258, 432, 617
FaeI	CATG	1 cut(s)	200
FaiI	YATR	5 cut(s)	20, 93, 198, 236, 845
FatI	CATG	1 cut(s)	196
Fnu4HI	GCNGC	5 cut(s)	171, 174, 459, 669, 742
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	5 cut(s)	171, 174, 459, 669, 742
FspBI	CTAG	3 cut(s)	374, 684, 696
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	5 cut(s)	171, 174, 459, 669, 742
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	5 cut(s)	402, 429, 564, 647, 850
HgaI	GACGC	3 cut(s)	275, 317, 395
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	2 cut(s)	271, 806
HpaII	CCGG	5 cut(s)	402, 429, 564, 647, 850
HphI	GGTGA	3 cut(s)	391, 493, 808
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	5 cut(s)	212, 513, 805, 886, 918
Hpy188III	TCNNGA	6 cut(s)	128, 249, 383, 684, 856, 928
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	2 cut(s)	311, 389
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	3 cut(s)	203, 286, 611
HpyCH4IV	ACGT	2 cut(s)	147, 245
HpyCH4V	TGCA	4 cut(s)	79, 190, 524, 971
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	2 cut(s)	758, 885
HpySE526I	ACGT	2 cut(s)	147, 245
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	8 cut(s)	63, 224, 538, 643, 730, 754, 852, 918
LmnI	GCTCC	2 cut(s)	163, 738
Lsp1109I	GCAGC	4 cut(s)	157, 160, 470, 680
MaeI	CTAG	3 cut(s)	374, 684, 696
MaeII	ACGT	2 cut(s)	147, 245
MalI	GATC	8 cut(s)	65, 226, 540, 645, 732, 756, 854, 920
MboI	GATC	8 cut(s)	63, 224, 538, 643, 730, 754, 852, 918
MboII	GAAGA	4 cut(s)	444, 447, 500, 871
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	3 cut(s)	643, 730, 852
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	9 cut(s)	4, 51, 74, 85, 97, 312, 345, 412, 619
MlyI	GAGTC	2 cut(s)	265, 800
MmeI	TCCRAC	3 cut(s)	37, 512, 896
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	3 cut(s)	315, 543, 979
MslI	CAYNNNNRTG	2 cut(s)	185, 195
MspA1I	CMGCKG	2 cut(s)	461, 941
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	5 cut(s)	402, 429, 564, 647, 850
MspR9I	CCNGG	3 cut(s)	342, 565, 735
MunI	CAATTG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	342, 735
MvnI	CGCG	2 cut(s)	269, 384
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	8 cut(s)	63, 224, 538, 643, 730, 754, 852, 918
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	2 cut(s)	732, 740
NruI	TCGCGA	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	192
PctI	GAATGC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	389
PkrI	GCNGC	5 cut(s)	172, 175, 460, 670, 743
PleI	GAGTC	2 cut(s)	265, 800
PpsI	GAGTC	2 cut(s)	265, 800
PpuMI	RGGWCCY	1 cut(s)	547
PsiI	TTATAA	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	340, 733
PspGI	CCWGG	2 cut(s)	340, 733
PspN4I	GGNNCC	2 cut(s)	732, 740
PspPI	GGNCC	3 cut(s)	59, 407, 547
PspPPI	RGGWCCY	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	3 cut(s)	643, 730, 852
PsyI	GACNNNGTC	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	941
RruI	TCGCGA	1 cut(s)	384
RsaI	GTAC	3 cut(s)	423, 665, 777
RsaNI	GTAC	3 cut(s)	422, 664, 776
RseI	CAYNNNNRTG	2 cut(s)	185, 195
SaqAI	TTAA	3 cut(s)	315, 543, 979
SatI	GCNGC	5 cut(s)	171, 174, 459, 669, 742
Sau3AI	GATC	8 cut(s)	63, 224, 538, 643, 730, 754, 852, 918
Sau96I	GGNCC	3 cut(s)	59, 407, 547
SchI	GAGTC	2 cut(s)	265, 800
ScrFI	CCNGG	3 cut(s)	342, 565, 735
SduI	GDGCHC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	3 cut(s)	59, 407, 547
SmiMI	CAYNNNNRTG	2 cut(s)	185, 195
SmlI	CTYRAG	3 cut(s)	542, 677, 779
SmoI	CTYRAG	3 cut(s)	542, 677, 779
Sse9I	AATT	9 cut(s)	4, 51, 74, 85, 97, 312, 345, 412, 619
SsiI	CCGC	2 cut(s)	461, 742
SspMI	CTAG	3 cut(s)	374, 684, 696
StyD4I	CCNGG	3 cut(s)	340, 563, 733
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	3 cut(s)	203, 286, 611
TaiI	ACGT	2 cut(s)	150, 248
TaqI	TCGA	2 cut(s)	289, 306
TaqII	GACCGA	2 cut(s)	76, 424
TasI	AATT	9 cut(s)	4, 51, 74, 85, 97, 312, 345, 412, 619
TauI	GCSGC	1 cut(s)	744
Tru1I	TTAA	3 cut(s)	315, 543, 979
Tru9I	TTAA	3 cut(s)	315, 543, 979
TscAI	CASTG	2 cut(s)	234, 596
TseI	GCWGC	4 cut(s)	170, 173, 458, 668
TspDTI	ATGAA	3 cut(s)	17, 98, 292
TspGWI	ACGGA	1 cut(s)	955
TspRI	CASTG	2 cut(s)	234, 596
Tth111I	GACNNNGTC	1 cut(s)	389
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	3 cut(s)	59, 407, 547
XapI	RAATTY	1 cut(s)	85
XbaI	TCTAGA	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XspI	CTAG	3 cut(s)	374, 684, 696
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.