Rmu_sc0002023.1_g000018

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002023.1
Physical Location & Seq
Reverse (-)
81475 .. 84250
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002023.1_g000018.1.cds

Sequence Viewer

Length: 1374 bp
atgggaggaattcgagtttctgggattttagttttgtgtcttttggttgttataggatctactgatgctcagttgcagttgggtttctacaccaagaagtgcccaaaagcagagaagatagtgaagaactttgttgaagagcacattcgaaatgctccatcacttgcagcagccctcataagaatgcacttccatgattgctttgtcaggggctgtgatgcttcagtgcttgtgaactcaacttcgagcaaccaagctgaaaaggatgctcccccaaatctaacactaagagggtttgacttcattgacagaataaagagcttagttgaagctcaatgccctggtgtagtttcatgtgctgatgttattgctttggcagcaagagactctgttgtagccacaggaggtcccttttggaatgttcctacagggagaagagatggagtgatctcaaggtcatcagaagctttagcaagcatcccatccccatttagcaacttcaccaccctccaaacaagttttgctaatcagggtcttgatttgaaggacttggtcctgctctctggtgctcacaccatcggtgtctctcattgcacatcgtttacaaaccgtctttacaatttcactggaaaaggtgatcaagacccagatttaaacagtcaatatgcagctaatctcaaggcaaagaaatgcaaaagtctaagtgataacacaacaatagttgagatggacccaggaagccacaggtcattcgaccttagctactacacactcttgcttaagagaaggggacttttccaatctgattctgctttaacaaaaagctcaaccacttacaactatatcaagcagcttcttcaaggttcgagtcaaaacttccatgctgaatttgccaagtctatggagaaaatgggtcgggttaaggtcaagacgggctcatctggtcagattaggaagcattgtgcagtgatcacggtttcagagggagaaggagttggttttcgtggttgggtctatacaacgagtttgatcagatctcgggctggtgggattgccagatcgggaagtgaaacaagtacaggtgtctgggtatcgatgctgcacatatttcgttccggcaaggcgcgggaggagtcgtcgaggtggaaaagccggccgccggagctgtggtggcacgatatgccgtcggaggacatgacggcggtggaggcaaaggagcagcttgattctcctcctctgttggctttggtttggtactgggtctctgggcctaggctcaaatttgggctgatagggcaggggagtcttcttgctatgcaagacttgatttgggtttgggctcaggttaaggcaatatgggccctaatgtattag

Protein Analysis

457

Amino Acids

50.19

Weight (kDa)

9.17

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1126
AciI CCGC 3 cut(s) 1126, 1157, 1202
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 1154
AcsI RAATTY 3 cut(s) 9, 887, 1280
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 2 cut(s) 1078, 1256
AfiI CCNNNNNNNGG 1 cut(s) 1159
AflII CTTAAG 1 cut(s) 779
AgsI TTSAA 4 cut(s) 137, 329, 544, 860
AjnI CCWGG 2 cut(s) 340, 733
Alw21I GWGCWC 2 cut(s) 144, 571
Alw26I GTCTC 3 cut(s) 378, 589, 1267
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 1038
AoxI GGCC 3 cut(s) 1154, 1268, 1359
ApaI GGGCCC 1 cut(s) 1363
ApeKI GCWGC 7 cut(s) 167, 170, 377, 668, 850, 1099, 1219
ApoI RAATTY 3 cut(s) 9, 887, 1280
AspA2I CCTAGG 1 cut(s) 1271
AspLEI GCGC 1 cut(s) 1126
AspS9I GGNCC 6 cut(s) 407, 553, 730, 1268, 1359, 1360
AsuHPI GGTGA 2 cut(s) 493, 647
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 1038
AvaII GGWCC 3 cut(s) 407, 553, 730
AvrII CCTAGG 1 cut(s) 1271
BaeGI GKGCMC 2 cut(s) 104, 1363
BanII GRGCYC 3 cut(s) 938, 1342, 1363
BbsI GAAGAC 1 cut(s) 1298
Bbv12I GWGCWC 2 cut(s) 144, 571
BbvI GCAGC 7 cut(s) 179, 182, 389, 680, 862, 1086, 1231
BccI CCATC 5 cut(s) 166, 434, 490, 584, 721
BceAI ACGGC 2 cut(s) 1168, 1215
BcgI CGANNNNNNTGC 2 cut(s) 1091, 1125
BciT130I CCWGG 2 cut(s) 342, 735
BclI TGATCA 3 cut(s) 637, 969, 1029
BcoDI GTCTC 3 cut(s) 378, 589, 1267
BfaI CTAG 1 cut(s) 1272
BfmI CTRYAG 1 cut(s) 426
BfrI CTTAAG 1 cut(s) 779
BglII AGATCT 1 cut(s) 1034
BisI GCNGC 8 cut(s) 168, 171, 378, 669, 851, 1100, 1157, 1220
BlnI CCTAGG 1 cut(s) 1271
BlsI GCNGC 8 cut(s) 169, 172, 379, 670, 852, 1101, 1158, 1221
Bme1390I CCNGG 2 cut(s) 342, 735
Bme18I GGWCC 3 cut(s) 407, 553, 730
BmeT110I CYCGRG 1 cut(s) 1038
BmgT120I GGNCC 6 cut(s) 407, 553, 730, 1268, 1359, 1360
BmiI GGNNCC 3 cut(s) 409, 732, 1361
BmrFI CCNGG 2 cut(s) 342, 735
BmrI ACTGGG 1 cut(s) 1267
BmsI GCATC 5 cut(s) 55, 208, 256, 486, 1086
BmuI ACTGGG 1 cut(s) 1267
BpiI GAAGAC 1 cut(s) 1298
Bpu10I CCTNAGC 2 cut(s) 758, 1341
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 436, 662
Bsa29I ATCGAT 1 cut(s) 1094
BsaI GGTCTC 1 cut(s) 1267
BsaJI CCNNGG 3 cut(s) 340, 733, 1271
BsaXI ACNNNNNCTCC 6 cut(s) 978, 1008, 1121, 1151, 1154, 1184
Bsc4I CCNNNNNNNGG 1 cut(s) 1159
Bse118I RCCGGY 1 cut(s) 1152
Bse1I ACTGG 2 cut(s) 631, 1262
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 2 cut(s) 342, 735
BseCI ATCGAT 1 cut(s) 1094
BseDI CCNNGG 3 cut(s) 340, 733, 1271
BseGI GGATG 3 cut(s) 271, 477, 482
BseLI CCNNNNNNNGG 1 cut(s) 1159
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 83, 1355
BseNI ACTGG 2 cut(s) 631, 1262
BseRI GAGGAG 3 cut(s) 1145, 1221, 1224
BseSI GKGCMC 2 cut(s) 104, 1363
BseX3I CGGCCG 1 cut(s) 1154
BseXI GCAGC 7 cut(s) 179, 182, 389, 680, 862, 1086, 1231
BsgI GTGCAG 2 cut(s) 984, 1085
Bsh1236I CGCG 1 cut(s) 1126
Bsh1285I CGRYCG 1 cut(s) 1157
BshFI GGCC 3 cut(s) 1156, 1270, 1361
BshVI ATCGAT 1 cut(s) 1094
BsiEI CGRYCG 1 cut(s) 1157
BsiHKAI GWGCWC 2 cut(s) 144, 571
BsiHKCI CYCGRG 1 cut(s) 1038
BsiSI CCGG 3 cut(s) 1116, 1153, 1160
BslFI GGGAC 2 cut(s) 393, 804
BslI CCNNNNNNNGG 1 cut(s) 1159
BsmAI GTCTC 3 cut(s) 378, 589, 1267
BsmFI GGGAC 2 cut(s) 393, 804
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 3 cut(s) 1156, 1270, 1361
Bso31I GGTCTC 1 cut(s) 1267
BsoBI CYCGRG 1 cut(s) 1038
Bsp119I TTCGAA 1 cut(s) 148
Bsp120I GGGCCC 1 cut(s) 1359
Bsp1286I GDGCHC 6 cut(s) 104, 144, 571, 938, 1342, 1363
Bsp143I GATC 7 cut(s) 56, 447, 637, 969, 1029, 1034, 1058
BspACI CCGC 3 cut(s) 1126, 1157, 1202
BspANI GGCC 3 cut(s) 1156, 1270, 1361
BspCNI CTCAG 2 cut(s) 82, 1354
BspDI ATCGAT 1 cut(s) 1094
BspFNI CGCG 1 cut(s) 1126
BspLI GGNNCC 3 cut(s) 409, 732, 1361
BspPI GGATC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 779
BspTNI GGTCTC 1 cut(s) 1267
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 1152
BsrI ACTGG 2 cut(s) 631, 1262
BssAI RCCGGY 1 cut(s) 1152
BssECI CCNNGG 3 cut(s) 340, 733, 1271
BssMI GATC 7 cut(s) 56, 447, 637, 969, 1029, 1034, 1058
BssT1I CCWWGG 1 cut(s) 1271
Bst2UI CCWGG 2 cut(s) 342, 735
Bst4CI ACNGT 3 cut(s) 611, 659, 976
Bst6I CTCTTC 2 cut(s) 132, 430
BstAFI CTTAAG 1 cut(s) 779
BstAPI GCANNNNNTGC 1 cut(s) 1180
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 475, 1154
BstDEI CTNAG 6 cut(s) 69, 287, 322, 701, 758, 1341
BstF5I GGATG 3 cut(s) 271, 477, 482
BstFNI CGCG 1 cut(s) 1126
BstHHI GCGC 1 cut(s) 1126
BstKTI GATC 7 cut(s) 59, 450, 640, 972, 1032, 1037, 1061
BstMAI GTCTC 3 cut(s) 378, 589, 1267
BstMBI GATC 7 cut(s) 56, 447, 637, 969, 1029, 1034, 1058
BstMCI CGRYCG 1 cut(s) 1157
BstMWI GCNNNNNNNGC 8 cut(s) 377, 890, 1162, 1171, 1180, 1208, 1294, 1358
BstNI CCWGG 2 cut(s) 342, 735
BstSCI CCNGG 2 cut(s) 340, 733
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 2 cut(s) 104, 1363
BstUI CGCG 1 cut(s) 1126
BstV1I GCAGC 7 cut(s) 179, 182, 389, 680, 862, 1086, 1231
BstV2I GAAGAC 1 cut(s) 1298
BstX2I RGATCY 2 cut(s) 56, 1034
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 2 cut(s) 56, 1034
BstZI CGGCCG 1 cut(s) 1154
Bsu15I ATCGAT 1 cut(s) 1094
BsuRI GGCC 3 cut(s) 1156, 1270, 1361
BsuTUI ATCGAT 1 cut(s) 1094
BtsCI GGATG 3 cut(s) 271, 477, 482
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 3 cut(s) 231, 624, 972
Cac8I GCNNGC 2 cut(s) 475, 1154
CaiI CAGNNNCTG 1 cut(s) 213
CfoI GCGC 1 cut(s) 1126
Cfr10I RCCGGY 1 cut(s) 1152
Cfr13I GGNCC 6 cut(s) 407, 553, 730, 1268, 1359, 1360
ClaI ATCGAT 1 cut(s) 1094
Csp6I GTAC 2 cut(s) 1077, 1255
CviAII CATG 4 cut(s) 194, 354, 881, 1195
CviQI GTAC 2 cut(s) 1077, 1255
DdeI CTNAG 6 cut(s) 69, 287, 322, 701, 758, 1341
DpnI GATC 7 cut(s) 58, 449, 639, 971, 1031, 1036, 1060
DpnII GATC 7 cut(s) 56, 447, 637, 969, 1029, 1034, 1058
DraI TTTAAA 1 cut(s) 654
EaeI YGGCCR 1 cut(s) 1154
EagI CGGCCG 1 cut(s) 1154
Eam1104I CTCTTC 2 cut(s) 132, 430
EarI CTCTTC 2 cut(s) 132, 430
EclXI CGGCCG 1 cut(s) 1154
Eco130I CCWWGG 1 cut(s) 1271
Eco24I GRGCYC 3 cut(s) 938, 1342, 1363
Eco31I GGTCTC 1 cut(s) 1267
Eco47I GGWCC 3 cut(s) 407, 553, 730
Eco52I CGGCCG 1 cut(s) 1154
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 1038
EcoO109I RGGNCCY 2 cut(s) 407, 1360
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 340, 733
EcoT14I CCWWGG 1 cut(s) 1271
EcoT38I GRGCYC 3 cut(s) 938, 1342, 1363
ErhI CCWWGG 1 cut(s) 1271
FaeI CATG 4 cut(s) 197, 357, 884, 1198
FaqI GGGAC 2 cut(s) 393, 804
FatI CATG 4 cut(s) 193, 353, 880, 1194
FauI CCCGC 1 cut(s) 1119
FbaI TGATCA 3 cut(s) 637, 969, 1029
Fnu4HI GCNGC 8 cut(s) 168, 171, 378, 669, 851, 1100, 1157, 1220
FokI GGATG 3 cut(s) 278, 464, 469
FriOI GRGCYC 3 cut(s) 938, 1342, 1363
Fsp4HI GCNGC 8 cut(s) 168, 171, 378, 669, 851, 1100, 1157, 1220
FspBI CTAG 1 cut(s) 1272
GlaI GCGC 1 cut(s) 1125
GluI GCNGC 8 cut(s) 168, 171, 378, 669, 851, 1100, 1157, 1220
HaeIII GGCC 3 cut(s) 1156, 1270, 1361
HapII CCGG 3 cut(s) 1116, 1153, 1160
HhaI GCGC 1 cut(s) 1126
Hin1II CATG 4 cut(s) 197, 357, 884, 1198
Hin6I GCGC 1 cut(s) 1124
HinP1I GCGC 1 cut(s) 1124
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 6 cut(s) 386, 806, 868, 1133, 1226, 1303
HpaII CCGG 3 cut(s) 1116, 1153, 1160
HphI GGTGA 2 cut(s) 493, 647
Hpy166II GTNNAC 2 cut(s) 235, 603
Hpy188I TCNGA 6 cut(s) 463, 805, 948, 982, 1034, 1189
Hpy188III TCNNGA 4 cut(s) 536, 641, 928, 1062
Hpy8I GTNNAC 2 cut(s) 235, 603
Hpy99I CGWCG 2 cut(s) 1141, 1189
HpyAV CCTTC 3 cut(s) 538, 780, 983
HpyCH4III ACNGT 3 cut(s) 611, 659, 976
HpyCH4V TGCA 9 cut(s) 76, 167, 187, 594, 668, 693, 965, 1102, 1318
HpyF10VI GCNNNNNNNGC 8 cut(s) 377, 890, 1162, 1171, 1180, 1208, 1294, 1358
HpyF3I CTNAG 6 cut(s) 69, 287, 322, 701, 758, 1341
Hsp92II CATG 4 cut(s) 197, 357, 884, 1198
HspAI GCGC 1 cut(s) 1124
KroI GCCGGC 1 cut(s) 1152
KroNI GCCGGC 1 cut(s) 1154
Ksp22I TGATCA 3 cut(s) 637, 969, 1029
Kzo9I GATC 7 cut(s) 56, 447, 637, 969, 1029, 1034, 1058
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 4 cut(s) 160, 274, 1162, 1216
Lsp1109I GCAGC 7 cut(s) 179, 182, 389, 680, 862, 1086, 1231
LweI GCATC 5 cut(s) 55, 208, 256, 486, 1086
MaeI CTAG 1 cut(s) 1272
MalI GATC 7 cut(s) 58, 449, 639, 971, 1031, 1036, 1060
MboI GATC 7 cut(s) 56, 447, 637, 969, 1029, 1034, 1058
MboII GAAGA 6 cut(s) 127, 136, 149, 447, 848, 1298
MflI RGATCY 2 cut(s) 56, 1034
MhlI GDGCHC 6 cut(s) 104, 144, 571, 938, 1342, 1363
MluCI AATT 4 cut(s) 9, 619, 887, 1280
MlyI GAGTC 4 cut(s) 380, 877, 1142, 1312
MmeI TCCRAC 1 cut(s) 1167
MroNI GCCGGC 1 cut(s) 1152
MseI TTAA 5 cut(s) 653, 780, 815, 921, 1347
MslI CAYNNNNRTG 2 cut(s) 182, 192
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 3 cut(s) 1116, 1153, 1160
MspR9I CCNGG 2 cut(s) 342, 735
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 2 cut(s) 342, 735
MvnI CGCG 1 cut(s) 1126
MwoI GCNNNNNNNGC 8 cut(s) 377, 890, 1162, 1171, 1180, 1208, 1294, 1358
NaeI GCCGGC 1 cut(s) 1154
NdeII GATC 7 cut(s) 56, 447, 637, 969, 1029, 1034, 1058
NgoMIV GCCGGC 1 cut(s) 1152
NlaIII CATG 4 cut(s) 197, 357, 884, 1198
NlaIV GGNNCC 3 cut(s) 409, 732, 1361
NspV TTCGAA 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 1154
PfeI GAWTC 2 cut(s) 806, 1226
PflFI GACNNNGTC 1 cut(s) 551
PkrI GCNGC 8 cut(s) 169, 172, 379, 670, 852, 1101, 1158, 1221
PleI GAGTC 4 cut(s) 380, 876, 1141, 1311
PpsI GAGTC 4 cut(s) 380, 876, 1141, 1311
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 2 cut(s) 340, 733
PspGI CCWGG 2 cut(s) 340, 733
PspN4I GGNNCC 3 cut(s) 409, 732, 1361
PspOMI GGGCCC 1 cut(s) 1359
PspPI GGNCC 6 cut(s) 407, 553, 730, 1268, 1359, 1360
PspPPI RGGWCCY 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 2 cut(s) 56, 1034
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 2 cut(s) 1078, 1256
RsaNI GTAC 2 cut(s) 1077, 1255
RseI CAYNNNNRTG 2 cut(s) 182, 192
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 5 cut(s) 653, 780, 815, 921, 1347
SatI GCNGC 8 cut(s) 168, 171, 378, 669, 851, 1100, 1157, 1220
Sau3AI GATC 7 cut(s) 56, 447, 637, 969, 1029, 1034, 1058
Sau96I GGNCC 6 cut(s) 407, 553, 730, 1268, 1359, 1360
SchI GAGTC 4 cut(s) 380, 877, 1142, 1312
ScrFI CCNGG 2 cut(s) 342, 735
SduI GDGCHC 6 cut(s) 104, 144, 571, 938, 1342, 1363
SfaNI GCATC 5 cut(s) 55, 208, 256, 486, 1086
SfcI CTRYAG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 3 cut(s) 407, 553, 730
SmiMI CAYNNNNRTG 2 cut(s) 182, 192
SmlI CTYRAG 3 cut(s) 451, 677, 779
SmoI CTYRAG 3 cut(s) 451, 677, 779
Sse9I AATT 4 cut(s) 9, 619, 887, 1280
SsiI CCGC 3 cut(s) 1126, 1157, 1202
SspMI CTAG 1 cut(s) 1272
StyD4I CCNGG 2 cut(s) 340, 733
StyI CCWWGG 1 cut(s) 1271
TaaI ACNGT 3 cut(s) 611, 659, 976
TaqI TCGA 7 cut(s) 13, 148, 245, 753, 866, 1094, 1139
TasI AATT 4 cut(s) 9, 619, 887, 1280
TatI WGTACW 1 cut(s) 1076
TauI GCSGC 1 cut(s) 1159
TfiI GAWTC 2 cut(s) 806, 1226
Tru1I TTAA 5 cut(s) 653, 780, 815, 921, 1347
Tru9I TTAA 5 cut(s) 653, 780, 815, 921, 1347
TscAI CASTG 3 cut(s) 231, 631, 972
TseI GCWGC 7 cut(s) 167, 170, 377, 668, 850, 1099, 1219
TspDTI ATGAA 2 cut(s) 292, 342
TspRI CASTG 3 cut(s) 231, 631, 972
Tth111I GACNNNGTC 1 cut(s) 551
Vha464I CTTAAG 1 cut(s) 779
VpaK11BI GGWCC 3 cut(s) 407, 553, 730
XapI RAATTY 3 cut(s) 9, 887, 1280
XmaJI CCTAGG 1 cut(s) 1271
XspI CTAG 1 cut(s) 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.