Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008222

Physical Location & Seq

Genomic Coordinates Reverse (-)

7730960 .. 7732680

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1092400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGGTCGACTCGATTTTCTGGGATTCTGGTTTCATGTCTTCTGGTGATCATAGGCCTCAGTGAGGCTCAGTTGCAACTGGGTTTCTATGCCAAGAACTGCCCGAATGCAGAGAAGATTGTGAAAGACTACGTCGGGGAGCACATCCACAACGCACCCTCACTTGCAGCTGCTCTCCTAAGGTTGCACTTCCATGATTGCTTTGTCAGGGGTTGTGATGCATCTGTTCTTCTGAACTCGACTTCAAGTAACCAAGCTGAAAAAGATGCTCCCCCAAATCTAAGCCTCAGAGGGTTTGACTTCATCGACAGAATAAAGAGCCAACTTGAAGCTCAATGCCCTGGAATAGTTTCATGCGCAGATGTTGTTGCTTTGGTAGCAAGAGATTCTATTGTTGCAACAGGAGGTCCAACTTGGAAGGTTCCAACAGGTAGAAGAGATGGGATGATCGCAAGGAGTGCAGAAGCCATAGCCAACCTTCCACCCCCAACTTCCAACTTCAGCAATCTCCAAAGCCTTTTTGCCAACGTGGGTCTTGATTGGAAGGACTTGGTCTTGCTATCTGGTGCTCACACAATTGGGATCTCTCATTGCTCGTCATTTTCAAACCGCCTTTACAATTTCACCGGAGTGGGTGACCAGGACCCCGATTTGAAAACCGAATACGCAGCGAAACTCAAGGCCAAGTGCAAAACTCCAACTGATAACACCACATTTGTTGAGATGGACCCTGGAAGCTTCAGGACTTTTGACCTAAGCTACTACACGCATTTGCTCAAAAGGCGAGGGCTCTTCCAATCCGATGCTGCTTTGAAAACCAGCCCAACAGCTTATAATTATATCAACCAGCTGCTCAAAGGTCCACTGCAGAACTTCTTCTATGAGTTTGGAAAGTCTATGGAGAAAATGGGTCGGGCTAACGTTAAGACTGGATCGGCTGGTGAGATTAGGAAGCAATGTTCAGTTGTGAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

35.39

Weight (kDa)

8.66

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	41 - 283	1.6e-84	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05260
fragaria_vesca	FvH4_6g43500 FvH4_6g43500
malus_domestica	MD09G1105900.v1.1 MD17G1092400.v1.1 MD17G1093600.v1.1
prunus_persica	Prupe.3G219700_v2.0.a1
pyrus_communis	pycom09g02850 pycom17g08950 pycom17g09070
rosa_chinensis	RchiOBHm_Chr2g0160001
rosa_laevigata	RLG00000021191
rosa_multiflora	Rmu_sc0002023.1_g000018 Rmu_sc0006940.1_g000001 Rmu_sc0029076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090100
rosa_rugosa	Rorug02G0479600 Rorug02G0479700
rosa_samantha	Rh2AG546300 Rh2BG559600 Rh2CG529700 Rh2DG568300
rosa_wichuraiana	Rw2G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	834
Acc16I	TGCGCA	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	1 cut(s)	610
AclI	AACGTT	1 cut(s)	921
AclWI	GGATC	2 cut(s)	590, 940
AcuI	CTGAAG	2 cut(s)	484, 724
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	5 cut(s)	246, 329, 606, 655, 814
AjnI	CCWGG	3 cut(s)	340, 639, 730
AleI	CACNNNNGTG	1 cut(s)	629
AloI	GAACNNNNNNTCC	2 cut(s)	943, 975
AluBI	AGCT	8 cut(s)	170, 257, 332, 738, 759, 830, 850, 975
AluI	AGCT	8 cut(s)	170, 257, 332, 738, 759, 830, 850, 975
Alw21I	GWGCWC	2 cut(s)	144, 571
AlwI	GGATC	2 cut(s)	590, 940
AoxI	GGCC	2 cut(s)	55, 681
ApeKI	GCWGC	5 cut(s)	167, 170, 668, 806, 850
Asp700I	GAANNNNTTC	2 cut(s)	349, 875
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	4 cut(s)	407, 643, 727, 860
AsuHPI	GGTGA	4 cut(s)	58, 616, 647, 953
AvaII	GGWCC	4 cut(s)	407, 643, 727, 860
AxyI	CCTNAGG	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	144, 571
BbvI	GCAGC	5 cut(s)	157, 179, 680, 793, 837
BccI	CCATC	2 cut(s)	434, 718
BciT130I	CCWGG	3 cut(s)	342, 641, 732
BclI	TGATCA	1 cut(s)	48
BfaI	CTAG	1 cut(s)	976
BfmI	CTRYAG	1 cut(s)	866
BisI	GCNGC	5 cut(s)	168, 171, 669, 807, 851
BlsI	GCNGC	5 cut(s)	169, 172, 670, 808, 852
Bme1390I	CCNGG	3 cut(s)	342, 641, 732
Bme18I	GGWCC	4 cut(s)	407, 643, 727, 860
BmgT120I	GGNCC	4 cut(s)	407, 643, 727, 860
BmiI	GGNNCC	3 cut(s)	423, 645, 729
BmrFI	CCNGG	3 cut(s)	342, 641, 732
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	4 cut(s)	208, 230, 256, 793
BmuI	ACTGGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	340, 730
BsaWI	WCCGGW	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	84, 934
Bse21I	CCTNAGG	1 cut(s)	179
Bse3DI	GCAATG	2 cut(s)	589, 962
BseBI	CCWGG	3 cut(s)	342, 641, 732
BseDI	CCNNGG	2 cut(s)	340, 730
BseGI	GGATG	2 cut(s)	144, 450
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	2 cut(s)	589, 962
BseMII	CTCAG	3 cut(s)	73, 83, 301
BseNI	ACTGG	2 cut(s)	84, 934
BseXI	GCAGC	5 cut(s)	157, 179, 680, 793, 837
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	57, 683
BsiHKAI	GWGCWC	2 cut(s)	144, 571
BsiSI	CCGG	1 cut(s)	627
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	57, 683
Bsp1286I	GDGCHC	3 cut(s)	144, 571, 792
Bsp143I	GATC	4 cut(s)	48, 447, 582, 932
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	2 cut(s)	57, 683
BspCNI	CTCAG	3 cut(s)	72, 82, 300
BspLI	GGNNCC	3 cut(s)	423, 645, 729
BspMAI	CTGCAG	1 cut(s)	870
BspPI	GGATC	2 cut(s)	590, 940
BspQI	GCTCTTC	1 cut(s)	797
BsrDI	GCAATG	2 cut(s)	589, 962
BsrI	ACTGG	2 cut(s)	84, 934
BssECI	CCNNGG	2 cut(s)	340, 730
BssMI	GATC	4 cut(s)	48, 447, 582, 932
Bst2UI	CCWGG	3 cut(s)	342, 641, 732
Bst6I	CTCTTC	2 cut(s)	430, 797
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstDEI	CTNAG	6 cut(s)	59, 69, 179, 281, 287, 755
BstEII	GGTNACC	1 cut(s)	635
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	144, 450
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	4 cut(s)	51, 450, 585, 935
BstMBI	GATC	4 cut(s)	48, 447, 582, 932
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 458, 781
BstNI	CCWGG	3 cut(s)	342, 641, 732
BstPI	GGTNACC	1 cut(s)	635
BstSCI	CCNGG	3 cut(s)	340, 639, 730
BstSFI	CTRYAG	1 cut(s)	866
BstV1I	GCAGC	5 cut(s)	157, 179, 680, 793, 837
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	57, 683
BtsCI	GGATG	2 cut(s)	144, 450
BtsI	GCAGTG	1 cut(s)	863
BtsIMutI	CAGTG	2 cut(s)	67, 863
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	4 cut(s)	407, 643, 727, 860
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	3 cut(s)	36, 194, 354
DdeI	CTNAG	6 cut(s)	59, 69, 179, 281, 287, 755
DpnI	GATC	4 cut(s)	50, 449, 584, 934
DpnII	GATC	4 cut(s)	48, 447, 582, 932
Eam1104I	CTCTTC	2 cut(s)	430, 797
EarI	CTCTTC	2 cut(s)	430, 797
Eco147I	AGGCCT	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	792
Eco47I	GGWCC	4 cut(s)	407, 643, 727, 860
Eco57I	CTGAAG	2 cut(s)	484, 724
Eco81I	CCTNAGG	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	643
EcoO65I	GGTNACC	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	340, 639, 730
EcoT22I	ATGCAT	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	792
FaeI	CATG	3 cut(s)	39, 197, 357
FatI	CATG	3 cut(s)	35, 193, 353
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	5 cut(s)	168, 171, 669, 807, 851
FokI	GGATG	2 cut(s)	131, 457
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	5 cut(s)	168, 171, 669, 807, 851
FspBI	CTAG	1 cut(s)	976
FspI	TGCGCA	1 cut(s)	358
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	5 cut(s)	168, 171, 669, 807, 851
HaeIII	GGCC	2 cut(s)	57, 683
HapII	CCGG	1 cut(s)	627
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	39, 197, 357
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	736
HinfI	GANTC	3 cut(s)	10, 25, 386
HpaII	CCGG	1 cut(s)	627
HphI	GGTGA	4 cut(s)	58, 616, 647, 953
Hpy166II	GTNNAC	2 cut(s)	9, 863
Hpy188I	TCNGA	3 cut(s)	234, 290, 802
Hpy188III	TCNNGA	2 cut(s)	536, 742
Hpy8I	GTNNAC	2 cut(s)	9, 863
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	412, 488, 538
HpyCH4IV	ACGT	3 cut(s)	132, 528, 921
HpyCH4V	TGCA	9 cut(s)	76, 110, 167, 187, 221, 398, 461, 690, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 458, 781
HpyF3I	CTNAG	6 cut(s)	59, 69, 179, 281, 287, 755
HpySE526I	ACGT	3 cut(s)	132, 528, 921
Hsp92II	CATG	3 cut(s)	39, 197, 357
HspAI	GCGC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	48, 447, 582, 932
LguI	GCTCTTC	1 cut(s)	797
LmnI	GCTCC	2 cut(s)	139, 274
Lsp1109I	GCAGC	5 cut(s)	157, 179, 680, 793, 837
LweI	GCATC	4 cut(s)	208, 230, 256, 793
MaeI	CTAG	1 cut(s)	976
MaeII	ACGT	3 cut(s)	132, 528, 921
MaeIII	GTNAC	2 cut(s)	248, 635
MalI	GATC	4 cut(s)	50, 449, 584, 934
MboI	GATC	4 cut(s)	48, 447, 582, 932
MboII	GAAGA	6 cut(s)	32, 127, 221, 447, 784, 868
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	3 cut(s)	144, 571, 792
MluCI	AATT	3 cut(s)	576, 619, 835
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	4 cut(s)	434, 449, 519, 722
MnlI	CCTC	7 cut(s)	58, 68, 169, 284, 296, 398, 779
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	2 cut(s)	349, 875
MseI	TTAA	1 cut(s)	924
MslI	CAYNNNNRTG	2 cut(s)	192, 629
MspA1I	CMGCKG	2 cut(s)	170, 850
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	3 cut(s)	342, 641, 732
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	3 cut(s)	342, 641, 732
MwoI	GCNNNNNNNGC	3 cut(s)	377, 458, 781
NdeII	GATC	4 cut(s)	48, 447, 582, 932
NlaIII	CATG	3 cut(s)	39, 197, 357
NlaIV	GGNNCC	3 cut(s)	423, 645, 729
NmuCI	GTSAC	1 cut(s)	635
NsbI	TGCGCA	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	797
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	349, 875
PfeI	GAWTC	2 cut(s)	25, 386
PflFI	GACNNNGTC	2 cut(s)	131, 551
PkrI	GCNGC	5 cut(s)	169, 172, 670, 808, 852
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PpuMI	RGGWCCY	1 cut(s)	643
PsiI	TTATAA	1 cut(s)	834
Psp1406I	AACGTT	1 cut(s)	921
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	340, 639, 730
PspEI	GGTNACC	1 cut(s)	635
PspGI	CCWGG	3 cut(s)	340, 639, 730
PspN4I	GGNNCC	3 cut(s)	423, 645, 729
PspPI	GGNCC	4 cut(s)	407, 643, 727, 860
PspPPI	RGGWCCY	1 cut(s)	643
PstI	CTGCAG	1 cut(s)	870
PsuI	RGATCY	1 cut(s)	582
PsyI	GACNNNGTC	2 cut(s)	131, 551
PvuII	CAGCTG	2 cut(s)	170, 850
RseI	CAYNNNNRTG	2 cut(s)	192, 629
SalI	GTCGAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	797
SaqAI	TTAA	1 cut(s)	924
SatI	GCNGC	5 cut(s)	168, 171, 669, 807, 851
Sau3AI	GATC	4 cut(s)	48, 447, 582, 932
Sau96I	GGNCC	4 cut(s)	407, 643, 727, 860
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	342, 641, 732
SduI	GDGCHC	3 cut(s)	144, 571, 792
SfaNI	GCATC	4 cut(s)	208, 230, 256, 793
SfcI	CTRYAG	1 cut(s)	866
SinI	GGWCC	4 cut(s)	407, 643, 727, 860
SmiMI	CAYNNNNRTG	2 cut(s)	192, 629
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	3 cut(s)	576, 619, 835
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	610
SspMI	CTAG	1 cut(s)	976
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	340, 639, 730
TaiI	ACGT	3 cut(s)	135, 531, 924
TaqI	TCGA	4 cut(s)	8, 13, 239, 306
TasI	AATT	3 cut(s)	576, 619, 835
TfiI	GAWTC	2 cut(s)	25, 386
Tru1I	TTAA	1 cut(s)	924
Tru9I	TTAA	1 cut(s)	924
TscAI	CASTG	2 cut(s)	67, 870
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	5 cut(s)	167, 170, 668, 806, 850
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	24, 292, 342
TspRI	CASTG	2 cut(s)	67, 870
Tth111I	GACNNNGTC	2 cut(s)	131, 551
VpaK11BI	GGWCC	4 cut(s)	407, 643, 727, 860
XagI	CCTNNNNNAGG	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	2 cut(s)	349, 875
XspI	CTAG	1 cut(s)	976
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.