Rh2DG568300

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008222
Physical Location & Seq
Forward (+)
79797997 .. 79799795
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG568300.1

Sequence Viewer

Length: 984 bp
ATGGGAGGAATTCGAGTTTCTGGGATTTTAGTTTTGTGTCTTTTGGTTGTTATAGGATCTACTGATGCTCAGTTGCAGTTGGGTTTCTACACCAAGAAGTGCCCAAAAGCAGAGAAGATAGTGAAGAACTTTGTTGAAGAGCACATTCGAAATGCTCCATCACTTGCAGCAGCCCTCATAAGAATGCACTTCCATGATTGCTTTGTCAGGGGCTGTGATGCTTCAGTGCTTGTGAACTCAACTTCGAGCAACCAAGCTGAAAAGGATGCTCCCCCAAATCTAACACTAAGAGGGTTTGACTTCATTGACAGAATAAAGAGCTTAGTTGAAGCTCAATGCCCTGGTGTAGTTTCATGTGCTGATGTTATTGCTTTGGCAGCAAGAGACTCTGTTGTAGCCACAGGAGGTCCCTTTTGGAATGTTCCTACAGGGAGAAGAGATGGAGTGATCTCAAGGTCATCAGAAGCTTTAGCAAGCATCCCATCCCCATTTAGCAACTTCACCACCCTCCAAACAAGTTTTGCTAATCAGGGTCTTGATTTGAAGGACTTGGTCCTGCTCTCTGGTGCTCACACCATCGGTGTCTCTCATTGCACATCGTTTACAAACCGTCTTTACAATTTCACTGGAAAAGGTGATCAAGACCCAGATTTAAACAGTCAATATGCAGCTAATCTCAAGGCAAAGAAATGCAAAAGTCTAAGTGATAACACAACAATAGTTGAGATGGACCCGGGAAGCCACAGGTCATTCGACCTTAGCTACTACACACTCTTGCTTAAGAGAAGGGGACTTTTCCAATCTGATTCTGCTTTAACAAAAAGCTCAACCACTTACAACTATATCAAGCAGCTTCTTCAAGGTTCGAGTCAAAACTTCCATGCTGAATTTGCCAAGTCTATGGAGAAAATGGGTCGGGTTAAGGTCAAGACGGGCTCATCTGGTCAGATTAGGAAGCATTGTGCAGTGGTGAATACTGAATAG

Protein Analysis

327

Amino Acids

35.52

Weight (kDa)

9.09

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 285 1.2e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 9, 887
AcuI CTGAAG 1 cut(s) 207
AflII CTTAAG 1 cut(s) 779
AgsI TTSAA 4 cut(s) 137, 329, 544, 860
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 8 cut(s) 257, 321, 332, 467, 671, 762, 825, 853
AluI AGCT 8 cut(s) 257, 321, 332, 467, 671, 762, 825, 853
Alw21I GWGCWC 2 cut(s) 144, 571
Alw26I GTCTC 2 cut(s) 378, 589
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 733
ApeKI GCWGC 5 cut(s) 167, 170, 377, 668, 850
ApoI RAATTY 2 cut(s) 9, 887
AspS9I GGNCC 3 cut(s) 407, 553, 730
AsuC2I CCSGG 2 cut(s) 734, 735
AsuHPI GGTGA 3 cut(s) 493, 647, 982
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 733
AvaII GGWCC 3 cut(s) 407, 553, 730
BaeGI GKGCMC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 938
Bbv12I GWGCWC 2 cut(s) 144, 571
BbvI GCAGC 5 cut(s) 179, 182, 389, 680, 862
BccI CCATC 5 cut(s) 166, 434, 490, 584, 721
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 2 cut(s) 734, 735
BcoDI GTCTC 2 cut(s) 378, 589
BfmI CTRYAG 1 cut(s) 426
BfrI CTTAAG 1 cut(s) 779
BisI GCNGC 5 cut(s) 168, 171, 378, 669, 851
BlsI GCNGC 5 cut(s) 169, 172, 379, 670, 852
Bme1390I CCNGG 3 cut(s) 342, 734, 735
Bme18I GGWCC 3 cut(s) 407, 553, 730
BmeT110I CYCGRG 1 cut(s) 733
BmgT120I GGNCC 3 cut(s) 407, 553, 730
BmiI GGNNCC 2 cut(s) 409, 732
BmrFI CCNGG 3 cut(s) 342, 734, 735
BmsI GCATC 4 cut(s) 55, 208, 256, 486
Bpu10I CCTNAGC 1 cut(s) 758
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 436, 662
BpuMI CCSGG 2 cut(s) 734, 735
BsaJI CCNNGG 2 cut(s) 340, 733
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 340, 733
BseGI GGATG 3 cut(s) 271, 477, 482
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 631
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 5 cut(s) 179, 182, 389, 680, 862
BsgI GTGCAG 1 cut(s) 984
BsiHKAI GWGCWC 2 cut(s) 144, 571
BsiHKCI CYCGRG 1 cut(s) 733
BsiSI CCGG 1 cut(s) 734
BslFI GGGAC 2 cut(s) 393, 804
BsmAI GTCTC 2 cut(s) 378, 589
BsmFI GGGAC 2 cut(s) 393, 804
BsmI GAATGC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 733
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 4 cut(s) 104, 144, 571, 938
Bsp143I GATC 3 cut(s) 56, 447, 637
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 409, 732
BspPI GGATC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 779
BsrDI GCAATG 1 cut(s) 589
BsrI ACTGG 1 cut(s) 631
BssECI CCNNGG 2 cut(s) 340, 733
BssMI GATC 3 cut(s) 56, 447, 637
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 611, 659
Bst6I CTCTTC 2 cut(s) 132, 430
BstAFI CTTAAG 1 cut(s) 779
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 5 cut(s) 69, 287, 322, 701, 758
BstF5I GGATG 3 cut(s) 271, 477, 482
BstKTI GATC 3 cut(s) 59, 450, 640
BstMAI GTCTC 2 cut(s) 378, 589
BstMBI GATC 3 cut(s) 56, 447, 637
BstMWI GCNNNNNNNGC 2 cut(s) 377, 890
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 3 cut(s) 340, 732, 733
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 104
BstV1I GCAGC 5 cut(s) 179, 182, 389, 680, 862
BstX2I RGATCY 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 1 cut(s) 56
BtsCI GGATG 3 cut(s) 271, 477, 482
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 3 cut(s) 231, 624, 972
Cac8I GCNNGC 1 cut(s) 475
CaiI CAGNNNCTG 1 cut(s) 213
Cfr13I GGNCC 3 cut(s) 407, 553, 730
Cfr9I CCCGGG 1 cut(s) 733
CviAII CATG 3 cut(s) 194, 354, 881
DdeI CTNAG 5 cut(s) 69, 287, 322, 701, 758
DpnI GATC 3 cut(s) 58, 449, 639
DpnII GATC 3 cut(s) 56, 447, 637
DraI TTTAAA 1 cut(s) 654
Eam1104I CTCTTC 2 cut(s) 132, 430
EarI CTCTTC 2 cut(s) 132, 430
Eco24I GRGCYC 1 cut(s) 938
Eco47I GGWCC 3 cut(s) 407, 553, 730
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 733
EcoO109I RGGNCCY 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 938
FaeI CATG 3 cut(s) 197, 357, 884
FaiI YATR 8 cut(s) 53, 179, 195, 355, 666, 843, 882, 902
FaqI GGGAC 2 cut(s) 393, 804
FatI CATG 3 cut(s) 193, 353, 880
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 5 cut(s) 168, 171, 378, 669, 851
FokI GGATG 3 cut(s) 278, 464, 469
FriOI GRGCYC 1 cut(s) 938
Fsp4HI GCNGC 5 cut(s) 168, 171, 378, 669, 851
GluI GCNGC 5 cut(s) 168, 171, 378, 669, 851
HapII CCGG 1 cut(s) 734
Hin1II CATG 3 cut(s) 197, 357, 884
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 3 cut(s) 386, 806, 868
HpaII CCGG 1 cut(s) 734
HphI GGTGA 3 cut(s) 493, 647, 982
Hpy166II GTNNAC 2 cut(s) 235, 603
Hpy188I TCNGA 3 cut(s) 463, 805, 948
Hpy188III TCNNGA 3 cut(s) 536, 641, 928
Hpy8I GTNNAC 2 cut(s) 235, 603
HpyAV CCTTC 2 cut(s) 538, 780
HpyCH4III ACNGT 2 cut(s) 611, 659
HpyCH4V TGCA 7 cut(s) 76, 167, 187, 594, 668, 693, 965
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 890
HpyF3I CTNAG 5 cut(s) 69, 287, 322, 701, 758
Hsp92II CATG 3 cut(s) 197, 357, 884
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 3 cut(s) 56, 447, 637
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 160, 274
Lsp1109I GCAGC 5 cut(s) 179, 182, 389, 680, 862
LweI GCATC 4 cut(s) 55, 208, 256, 486
MalI GATC 3 cut(s) 58, 449, 639
MboI GATC 3 cut(s) 56, 447, 637
MboII GAAGA 5 cut(s) 127, 136, 149, 447, 848
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 4 cut(s) 104, 144, 571, 938
MluCI AATT 3 cut(s) 9, 619, 887
MlyI GAGTC 2 cut(s) 380, 877
MnlI CCTC 4 cut(s) 185, 284, 398, 518
MseI TTAA 4 cut(s) 653, 780, 815, 921
MslI CAYNNNNRTG 2 cut(s) 182, 192
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 1 cut(s) 734
MspR9I CCNGG 3 cut(s) 342, 734, 735
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 377, 890
NciI CCSGG 2 cut(s) 734, 735
NdeII GATC 3 cut(s) 56, 447, 637
NlaIII CATG 3 cut(s) 197, 357, 884
NlaIV GGNNCC 2 cut(s) 409, 732
NspV TTCGAA 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 806
PflFI GACNNNGTC 1 cut(s) 551
PkrI GCNGC 5 cut(s) 169, 172, 379, 670, 852
PleI GAGTC 2 cut(s) 380, 876
PpsI GAGTC 2 cut(s) 380, 876
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 409, 732
PspPI GGNCC 3 cut(s) 407, 553, 730
PspPPI RGGWCCY 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 56
PsyI GACNNNGTC 1 cut(s) 551
RseI CAYNNNNRTG 2 cut(s) 182, 192
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 4 cut(s) 653, 780, 815, 921
SatI GCNGC 5 cut(s) 168, 171, 378, 669, 851
Sau3AI GATC 3 cut(s) 56, 447, 637
Sau96I GGNCC 3 cut(s) 407, 553, 730
SchI GAGTC 2 cut(s) 380, 877
ScrFI CCNGG 3 cut(s) 342, 734, 735
SduI GDGCHC 4 cut(s) 104, 144, 571, 938
SfaNI GCATC 4 cut(s) 55, 208, 256, 486
SfcI CTRYAG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 3 cut(s) 407, 553, 730
SmaI CCCGGG 1 cut(s) 735
SmiMI CAYNNNNRTG 2 cut(s) 182, 192
SmlI CTYRAG 3 cut(s) 451, 677, 779
SmoI CTYRAG 3 cut(s) 451, 677, 779
Sse9I AATT 3 cut(s) 9, 619, 887
StyD4I CCNGG 3 cut(s) 340, 732, 733
TaaI ACNGT 2 cut(s) 611, 659
TaqI TCGA 5 cut(s) 13, 148, 245, 753, 866
TasI AATT 3 cut(s) 9, 619, 887
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 4 cut(s) 653, 780, 815, 921
Tru9I TTAA 4 cut(s) 653, 780, 815, 921
TscAI CASTG 3 cut(s) 231, 631, 972
TseI GCWGC 5 cut(s) 167, 170, 377, 668, 850
TspDTI ATGAA 2 cut(s) 292, 342
TspMI CCCGGG 1 cut(s) 733
TspRI CASTG 3 cut(s) 231, 631, 972
Tth111I GACNNNGTC 1 cut(s) 551
Vha464I CTTAAG 1 cut(s) 779
VpaK11BI GGWCC 3 cut(s) 407, 553, 730
XapI RAATTY 2 cut(s) 9, 887
XmaI CCCGGG 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.