Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008222

Physical Location & Seq

Genomic Coordinates Reverse (-)

2081791 .. 2083274

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAAATGGGGTCGATTCGATTTTCTGGGATTTTGGTTTCATGTCTTCTGGTGATCATAGGCTTCAGTGAAGCTCAGTTGCAATTGGGATTTTATTCCAAGAACTGCCCAAAAGCAGAGAAGATTGTGAAAGACTACGTCGAGGAGCATATCCACAATGCACCCTCACTTGCAGCTGCTCTCATAAGGTTGCACTTCCATGATTGCTTTGTCAGGGGTTGTGACGCATCCGTTCTTCTGAACTCGACTTCAAGTAACCAAGCTGAAAAAGATGCTCCCCCAAATCTAACCCTTAGAGGGTTTGTCTTCATTGACAGAATAAAGAGCCGACTTGAAGCTCAATGCCCTGCAGTAGTTTCCTGCGCAGATGTTATTGCTTTGGCAGCAAGAGATTCCATTGTTGCAACAGGAGGTCCAACTTGGAAGGTTCCAACAGGTAGAAGAGATGGGGTGATCGCAAGGAGGGCAGAAGCCTTGGCCAACATCCCAACCCCATTTTCCAACTTGAGCACTCTCCAAAGAACTTTTGCCAACGTGGGTCTTGATTTGAAGGACTTGGTCTTGCTACCTGGTGCTCACACAATTGGGGTCTCTCATTGCCCATCATTTTCAAACCGCCTTTACAATTTCACCGGAGTGGGTGACCAGGACCCGGCTTTGAACACCCAATATGCAGCTAATCTCAAGGCCAACAAGTGCAAAACTCCAACTGATAACACCACAATTGTTGAGATGGACCCTGGAAGCTTCCGTACTTTTGACCTAAGCTACTACAAACTTTTGCTCAAAAGGCGAGGGCTGTTTGAATCCGATGCTGCTTTGACAACCAGCTCAACCACTCTTAATTATATCAACCGACTGCTCAAAGGTTCACTGCAGAACTTCTACGACGAGTTTGGAAAGTCCATGGAGAAAATGGGTCGGATTAATGTTAAGACTGGATCGGCTGGTGAGATTAGGAAGCAGTGTTCAGTTGTGAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

329

Amino Acids

35.82

Weight (kDa)

9.1

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	43 - 287	8.7e-84	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05260
fragaria_vesca	FvH4_6g43500 FvH4_6g43500
malus_domestica	MD09G1105900.v1.1 MD17G1092400.v1.1 MD17G1093600.v1.1
prunus_persica	Prupe.3G219700_v2.0.a1
pyrus_communis	pycom09g02850 pycom17g08950 pycom17g09070
rosa_chinensis	RchiOBHm_Chr2g0160001
rosa_laevigata	RLG00000021191
rosa_multiflora	Rmu_sc0002023.1_g000018 Rmu_sc0006940.1_g000001 Rmu_sc0029076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090100
rosa_rugosa	Rorug02G0479600 Rorug02G0479700
rosa_samantha	Rh2AG546300 Rh2BG559600 Rh2CG529700 Rh2DG568300
rosa_wichuraiana	Rw2G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	364
AciI	CCGC	1 cut(s)	616
AclWI	GGATC	1 cut(s)	949
AcoI	YGGCCR	1 cut(s)	477
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	754
AfiI	CCNNNNNNNGG	2 cut(s)	297, 652
AgsI	TTSAA	6 cut(s)	252, 335, 550, 612, 661, 806
AjnI	CCWGG	3 cut(s)	568, 645, 739
AjuI	GAANNNNNNNTTGG	2 cut(s)	481, 513
AleI	CACNNNNGTG	1 cut(s)	635
AloI	GAACNNNNNNTCC	2 cut(s)	952, 984
AluBI	AGCT	9 cut(s)	74, 176, 263, 338, 677, 747, 768, 831, 984
AluI	AGCT	9 cut(s)	74, 176, 263, 338, 677, 747, 768, 831, 984
Alw21I	GWGCWC	2 cut(s)	512, 577
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	1 cut(s)	949
AoxI	GGCC	2 cut(s)	477, 687
ApeKI	GCWGC	5 cut(s)	173, 176, 383, 674, 815
AseI	ATTAAT	1 cut(s)	927
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	3 cut(s)	413, 649, 736
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	5 cut(s)	64, 463, 622, 653, 962
AvaII	GGWCC	3 cut(s)	413, 649, 736
BalI	TGGCCA	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	736, 768
BbsI	GAAGAC	2 cut(s)	38, 298
Bbv12I	GWGCWC	2 cut(s)	512, 577
BbvI	GCAGC	5 cut(s)	163, 185, 395, 686, 802
BccI	CCATC	3 cut(s)	440, 610, 727
BciT130I	CCWGG	3 cut(s)	570, 647, 741
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	1 cut(s)	985
BfmI	CTRYAG	2 cut(s)	348, 875
BisI	GCNGC	5 cut(s)	174, 177, 384, 675, 816
BlsI	GCNGC	5 cut(s)	175, 178, 385, 676, 817
Bme1390I	CCNGG	4 cut(s)	570, 647, 653, 741
Bme18I	GGWCC	3 cut(s)	413, 649, 736
BmgT120I	GGNCC	3 cut(s)	413, 649, 736
BmiI	GGNNCC	3 cut(s)	429, 651, 738
BmrFI	CCNGG	4 cut(s)	570, 647, 653, 741
BmsI	GCATC	3 cut(s)	236, 262, 802
BpiI	GAAGAC	2 cut(s)	38, 298
Bpu10I	CCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	2 cut(s)	526, 668
BpuMI	CCSGG	1 cut(s)	653
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	3 cut(s)	474, 739, 906
BsaWI	WCCGGW	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 652
Bse1I	ACTGG	1 cut(s)	943
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	3 cut(s)	570, 647, 741
BseDI	CCNNGG	3 cut(s)	474, 739, 906
BseGI	GGATG	2 cut(s)	227, 483
BseLI	CCNNNNNNNGG	2 cut(s)	297, 652
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	943
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	5 cut(s)	163, 185, 395, 686, 802
BshFI	GGCC	2 cut(s)	479, 689
BsiHKAI	GWGCWC	2 cut(s)	512, 577
BsiSI	CCGG	2 cut(s)	633, 653
BslI	CCNNNNNNNGG	2 cut(s)	297, 652
BsmAI	GTCTC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	479, 689
Bso31I	GGTCTC	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	512, 577
Bsp143I	GATC	3 cut(s)	54, 453, 941
Bsp19I	CCATGG	1 cut(s)	906
BspACI	CCGC	1 cut(s)	616
BspANI	GGCC	2 cut(s)	479, 689
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	429, 651, 738
BspMAI	CTGCAG	2 cut(s)	352, 879
BspPI	GGATC	1 cut(s)	949
BspTNI	GGTCTC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	943
BssECI	CCNNGG	3 cut(s)	474, 739, 906
BssMI	GATC	3 cut(s)	54, 453, 941
BssT1I	CCWWGG	2 cut(s)	474, 906
Bst2UI	CCWGG	3 cut(s)	570, 647, 741
Bst6I	CTCTTC	1 cut(s)	436
BstDEI	CTNAG	3 cut(s)	75, 293, 764
BstDSI	CCRYGG	1 cut(s)	906
BstEII	GGTNACC	1 cut(s)	641
BstF5I	GGATG	2 cut(s)	227, 483
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	3 cut(s)	57, 456, 944
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	3 cut(s)	54, 453, 941
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 464, 790
BstNI	CCWGG	3 cut(s)	570, 647, 741
BstPI	GGTNACC	1 cut(s)	641
BstSCI	CCNGG	4 cut(s)	568, 645, 651, 739
BstSFI	CTRYAG	2 cut(s)	348, 875
BstV1I	GCAGC	5 cut(s)	163, 185, 395, 686, 802
BstV2I	GAAGAC	2 cut(s)	38, 298
BsuRI	GGCC	2 cut(s)	479, 689
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	2 cut(s)	227, 483
BtsI	GCAGTG	2 cut(s)	872, 971
BtsIMutI	CAGTG	3 cut(s)	73, 872, 971
CfoI	GCGC	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	413, 649, 736
CseI	GACGC	1 cut(s)	233
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	753
CspCI	CAANNNNNGTGG	2 cut(s)	709, 744
CviAII	CATG	3 cut(s)	42, 200, 907
CviQI	GTAC	1 cut(s)	753
DdeI	CTNAG	3 cut(s)	75, 293, 764
DpnI	GATC	3 cut(s)	56, 455, 943
DpnII	GATC	3 cut(s)	54, 453, 941
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	474, 906
Eco31I	GGTCTC	1 cut(s)	595
Eco47I	GGWCC	3 cut(s)	413, 649, 736
Eco57I	CTGAAG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	649
EcoO65I	GGTNACC	1 cut(s)	641
EcoRII	CCWGG	3 cut(s)	568, 645, 739
EcoT14I	CCWWGG	2 cut(s)	474, 906
ErhI	CCWWGG	2 cut(s)	474, 906
FaeI	CATG	3 cut(s)	45, 203, 910
FaiI	YATR	8 cut(s)	43, 59, 150, 185, 201, 672, 849, 908
FatI	CATG	3 cut(s)	41, 199, 906
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	174, 177, 384, 675, 816
FokI	GGATG	2 cut(s)	214, 470
Fsp4HI	GCNGC	5 cut(s)	174, 177, 384, 675, 816
FspBI	CTAG	1 cut(s)	985
FspI	TGCGCA	1 cut(s)	364
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	5 cut(s)	174, 177, 384, 675, 816
HaeIII	GGCC	2 cut(s)	479, 689
HapII	CCGG	2 cut(s)	633, 653
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	3 cut(s)	45, 203, 910
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	745
HinfI	GANTC	3 cut(s)	16, 392, 806
HpaII	CCGG	2 cut(s)	633, 653
HphI	GGTGA	5 cut(s)	64, 463, 622, 653, 962
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188I	TCNGA	3 cut(s)	240, 811, 924
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	1 cut(s)	872
Hpy99I	CGWCG	2 cut(s)	143, 893
HpyAV	CCTTC	2 cut(s)	418, 544
HpyCH4IV	ACGT	2 cut(s)	138, 534
HpyCH4V	TGCA	9 cut(s)	82, 161, 173, 193, 350, 404, 674, 699, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 464, 790
HpyF3I	CTNAG	3 cut(s)	75, 293, 764
HpySE526I	ACGT	2 cut(s)	138, 534
Hsp92II	CATG	3 cut(s)	45, 203, 910
HspAI	GCGC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	54, 453, 941
LmnI	GCTCC	2 cut(s)	145, 280
Lsp1109I	GCAGC	5 cut(s)	163, 185, 395, 686, 802
LweI	GCATC	3 cut(s)	236, 262, 802
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	1 cut(s)	985
MaeII	ACGT	2 cut(s)	138, 534
MaeIII	GTNAC	3 cut(s)	221, 254, 641
MalI	GATC	3 cut(s)	56, 455, 943
MboI	GATC	3 cut(s)	54, 453, 941
MboII	GAAGA	5 cut(s)	38, 133, 227, 298, 453
MfeI	CAATTG	3 cut(s)	83, 582, 723
MhlI	GDGCHC	2 cut(s)	512, 577
MlsI	TGGCCA	1 cut(s)	479
MluCI	AATT	5 cut(s)	83, 582, 625, 723, 844
MluNI	TGGCCA	1 cut(s)	479
MmeI	TCCRAC	5 cut(s)	440, 455, 525, 731, 902
MnlI	CCTC	6 cut(s)	136, 175, 290, 404, 456, 788
Mox20I	TGGCCA	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	479
MseI	TTAA	3 cut(s)	843, 927, 933
MslI	CAYNNNNRTG	2 cut(s)	198, 635
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	633, 653
MspR9I	CCNGG	4 cut(s)	570, 647, 653, 741
MunI	CAATTG	3 cut(s)	83, 582, 723
MvaI	CCWGG	3 cut(s)	570, 647, 741
MwoI	GCNNNNNNNGC	3 cut(s)	383, 464, 790
NciI	CCSGG	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	906
NdeII	GATC	3 cut(s)	54, 453, 941
NlaIII	CATG	3 cut(s)	45, 203, 910
NlaIV	GGNNCC	3 cut(s)	429, 651, 738
NmuCI	GTSAC	2 cut(s)	221, 641
NsbI	TGCGCA	1 cut(s)	364
OliI	CACNNNNGTG	1 cut(s)	635
PfeI	GAWTC	3 cut(s)	16, 392, 806
PflFI	GACNNNGTC	2 cut(s)	137, 557
PkrI	GCNGC	5 cut(s)	175, 178, 385, 676, 817
PpuMI	RGGWCCY	1 cut(s)	649
PshBI	ATTAAT	1 cut(s)	927
Psp5II	RGGWCCY	1 cut(s)	649
Psp6I	CCWGG	3 cut(s)	568, 645, 739
PspEI	GGTNACC	1 cut(s)	641
PspGI	CCWGG	3 cut(s)	568, 645, 739
PspN4I	GGNNCC	3 cut(s)	429, 651, 738
PspPI	GGNCC	3 cut(s)	413, 649, 736
PspPPI	RGGWCCY	1 cut(s)	649
PstI	CTGCAG	2 cut(s)	352, 879
PsyI	GACNNNGTC	2 cut(s)	137, 557
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	754
RsaNI	GTAC	1 cut(s)	753
RseI	CAYNNNNRTG	2 cut(s)	198, 635
SaqAI	TTAA	3 cut(s)	843, 927, 933
SatI	GCNGC	5 cut(s)	174, 177, 384, 675, 816
Sau3AI	GATC	3 cut(s)	54, 453, 941
Sau96I	GGNCC	3 cut(s)	413, 649, 736
ScrFI	CCNGG	4 cut(s)	570, 647, 653, 741
SduI	GDGCHC	2 cut(s)	512, 577
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	3 cut(s)	236, 262, 802
SfcI	CTRYAG	2 cut(s)	348, 875
SinI	GGWCC	3 cut(s)	413, 649, 736
SmiMI	CAYNNNNRTG	2 cut(s)	198, 635
SmlI	CTYRAG	2 cut(s)	505, 683
SmoI	CTYRAG	2 cut(s)	505, 683
Sse9I	AATT	5 cut(s)	83, 582, 625, 723, 844
SsiI	CCGC	1 cut(s)	616
SspMI	CTAG	1 cut(s)	985
StyD4I	CCNGG	4 cut(s)	568, 645, 651, 739
StyI	CCWWGG	2 cut(s)	474, 906
TaiI	ACGT	2 cut(s)	141, 537
TaqI	TCGA	4 cut(s)	14, 19, 141, 245
TasI	AATT	5 cut(s)	83, 582, 625, 723, 844
TfiI	GAWTC	3 cut(s)	16, 392, 806
Tru1I	TTAA	3 cut(s)	843, 927, 933
Tru9I	TTAA	3 cut(s)	843, 927, 933
TscAI	CASTG	3 cut(s)	73, 879, 971
TseFI	GTSAC	2 cut(s)	221, 641
TseI	GCWGC	5 cut(s)	173, 176, 383, 674, 815
Tsp45I	GTSAC	2 cut(s)	221, 641
TspDTI	ATGAA	3 cut(s)	17, 30, 298
TspGWI	ACGGA	2 cut(s)	220, 740
TspRI	CASTG	3 cut(s)	73, 879, 971
Tth111I	GACNNNGTC	2 cut(s)	137, 557
VpaK11BI	GGWCC	3 cut(s)	413, 649, 736
VspI	ATTAAT	1 cut(s)	927
XcmI	CCANNNNNNNNNTGG	1 cut(s)	913
XspI	CTAG	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.