Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008222

Physical Location & Seq

Genomic Coordinates Reverse (-)

6783632 .. 6785182

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGGTCGACTCGATTTTCTGGGATTTTCGTTTCATGTCTTCTGGTGATCATAGGCCTCAGTGAGGCTCAGTTGCAACTGGGTTTCTATGCCAAGAACTGCCCGAAAGCAGAGAAGATTGTGAACGACTACGTCGAGGAGCACATCCACAACGCACCCTCACTTGCTGCTGCTCTCATAAGGTTGCACTTCCATGATTGCTTTGTCAGGGGTTGTGATGCATCTGTTCTTCTGAACTCGACTTCAAGTAACCAAGCTGAAAAAGATGCTCCCCCAAATCTAACCCTCAGAGGGTTTGACTTCATCGACAGAATAAAAAGCCGACTTGAAGCTCAATGCCCTGGAATAGTTTCATGCGCAGATGTTATTGCTTTGGCAGCAAGAGATTCTATTGTTGCAACAGGAGGTCCAACTTGGAAGGTTCCAACAGGTAGAAGAGATGGGGTGATCGCAAGGAGGGCAGAAGCCTTAGCCAATATTCCACCCCCAACTTCCAACTTCAGCAATCTCCAAAGAATTTTTGCCAACGTGGGTCTTGATTTGAAGGACTTGGTCTTGCTATCTGGTGCTCACACAATTGGGGTCTCTCATTGCTCATCATTTTCAAACCGCCTTTACAATTTCACCGGAGTGGGTGACCAGGACCCCGCTTTGAACACCCAATACGCAGCGAATCTCAAGGCCAACAAGTGCAAAACTCCAACTGATAACACCACAATTGTTGAGATGGACCCTGGAAGCGTCAGGACTTTTGACCTAAGCTACTACACACTTTTGCTCAAAAGGCGAGGGCTCTTCCAATCCGATGCTGCTTTGACAACCAGCTCAACAACTTATAATCATATCAACCAGCTGCTCAAAGGTTCACTGCAGAACTTCTACGATATGTTTGGAAAGTCTATGGAGAAAATGGGTCGGGCTAACGTTAAGACTGGATCGGCTGGCGAGATTAGGAAGCAATGTTCAGTTGTGAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

327

Amino Acids

35.4

Weight (kDa)

8.81

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 284	3e-85	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05260
fragaria_vesca	FvH4_6g43500 FvH4_6g43500
malus_domestica	MD09G1105900.v1.1 MD17G1092400.v1.1 MD17G1093600.v1.1
prunus_persica	Prupe.3G219700_v2.0.a1
pyrus_communis	pycom09g02850 pycom17g08950 pycom17g09070
rosa_chinensis	RchiOBHm_Chr2g0160001
rosa_laevigata	RLG00000021191
rosa_multiflora	Rmu_sc0002023.1_g000018 Rmu_sc0006940.1_g000001 Rmu_sc0029076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090100
rosa_rugosa	Rorug02G0479600 Rorug02G0479700
rosa_samantha	Rh2AG546300 Rh2BG559600 Rh2CG529700 Rh2DG568300
rosa_wichuraiana	Rw2G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	837
Acc16I	TGCGCA	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	2 cut(s)	610, 648
AclI	AACGTT	1 cut(s)	924
AclWI	GGATC	1 cut(s)	943
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	484
AfiI	CCNNNNNNNGG	2 cut(s)	64, 291
AgsI	TTSAA	5 cut(s)	246, 329, 544, 606, 655
AjnI	CCWGG	3 cut(s)	340, 639, 733
AleI	CACNNNNGTG	1 cut(s)	629
AloI	GAACNNNNNNTCC	2 cut(s)	946, 978
AluBI	AGCT	6 cut(s)	257, 332, 762, 825, 853, 978
AluI	AGCT	6 cut(s)	257, 332, 762, 825, 853, 978
Alw21I	GWGCWC	2 cut(s)	144, 571
Alw26I	GTCTC	1 cut(s)	589
AlwI	GGATC	1 cut(s)	943
AoxI	GGCC	2 cut(s)	55, 681
ApeKI	GCWGC	6 cut(s)	167, 170, 377, 668, 809, 853
ApoI	RAATTY	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	407, 643, 730
AsuHPI	GGTGA	4 cut(s)	58, 457, 616, 647
AvaII	GGWCC	3 cut(s)	407, 643, 730
BanII	GRGCYC	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	144, 571
BbvI	GCAGC	6 cut(s)	154, 157, 389, 680, 796, 840
BccI	CCATC	2 cut(s)	434, 721
BciT130I	CCWGG	3 cut(s)	342, 641, 735
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	1 cut(s)	979
BfmI	CTRYAG	1 cut(s)	869
BisI	GCNGC	6 cut(s)	168, 171, 378, 669, 810, 854
BlsI	GCNGC	6 cut(s)	169, 172, 379, 670, 811, 855
Bme1390I	CCNGG	3 cut(s)	342, 641, 735
Bme18I	GGWCC	3 cut(s)	407, 643, 730
BmgT120I	GGNCC	3 cut(s)	407, 643, 730
BmiI	GGNNCC	3 cut(s)	423, 645, 732
BmrFI	CCNGG	3 cut(s)	342, 641, 735
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	4 cut(s)	208, 230, 256, 796
BmuI	ACTGGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	2 cut(s)	469, 758
BpuEI	CTTGAG	1 cut(s)	662
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	340, 733
BsaWI	WCCGGW	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 291
Bse1I	ACTGG	2 cut(s)	84, 937
Bse3DI	GCAATG	2 cut(s)	589, 965
BseBI	CCWGG	3 cut(s)	342, 641, 735
BseDI	CCNNGG	2 cut(s)	340, 733
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	64, 291
BseMI	GCAATG	2 cut(s)	589, 965
BseMII	CTCAG	3 cut(s)	73, 83, 301
BseNI	ACTGG	2 cut(s)	84, 937
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	6 cut(s)	154, 157, 389, 680, 796, 840
BshFI	GGCC	2 cut(s)	57, 683
BsiHKAI	GWGCWC	2 cut(s)	144, 571
BsiSI	CCGG	1 cut(s)	627
BslI	CCNNNNNNNGG	2 cut(s)	64, 291
BsmAI	GTCTC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	57, 683
Bso31I	GGTCTC	1 cut(s)	589
Bsp1286I	GDGCHC	3 cut(s)	144, 571, 795
Bsp143I	GATC	3 cut(s)	48, 447, 935
BspACI	CCGC	2 cut(s)	610, 648
BspANI	GGCC	2 cut(s)	57, 683
BspCNI	CTCAG	3 cut(s)	72, 82, 300
BspLI	GGNNCC	3 cut(s)	423, 645, 732
BspMAI	CTGCAG	1 cut(s)	873
BspPI	GGATC	1 cut(s)	943
BspQI	GCTCTTC	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	589
BsrDI	GCAATG	2 cut(s)	589, 965
BsrI	ACTGG	2 cut(s)	84, 937
BssECI	CCNNGG	2 cut(s)	340, 733
BssMI	GATC	3 cut(s)	48, 447, 935
Bst2UI	CCWGG	3 cut(s)	342, 641, 735
Bst6I	CTCTTC	2 cut(s)	430, 800
BstC8I	GCNNGC	1 cut(s)	943
BstDEI	CTNAG	5 cut(s)	59, 69, 287, 469, 758
BstEII	GGTNACC	1 cut(s)	635
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	3 cut(s)	51, 450, 938
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	3 cut(s)	48, 447, 935
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 458, 784
BstNI	CCWGG	3 cut(s)	342, 641, 735
BstPI	GGTNACC	1 cut(s)	635
BstSCI	CCNGG	3 cut(s)	340, 639, 733
BstSFI	CTRYAG	1 cut(s)	869
BstV1I	GCAGC	6 cut(s)	154, 157, 389, 680, 796, 840
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	57, 683
BtsCI	GGATG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	2 cut(s)	67, 866
Cac8I	GCNNGC	1 cut(s)	943
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	407, 643, 730
CseI	GACGC	1 cut(s)	730
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviAII	CATG	3 cut(s)	36, 194, 354
DdeI	CTNAG	5 cut(s)	59, 69, 287, 469, 758
DpnI	GATC	3 cut(s)	50, 449, 937
DpnII	GATC	3 cut(s)	48, 447, 935
Eam1104I	CTCTTC	2 cut(s)	430, 800
EarI	CTCTTC	2 cut(s)	430, 800
Eco147I	AGGCCT	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	795
Eco31I	GGTCTC	1 cut(s)	589
Eco47I	GGWCC	3 cut(s)	407, 643, 730
Eco57I	CTGAAG	1 cut(s)	484
Eco91I	GGTNACC	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	643
EcoO65I	GGTNACC	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	340, 639, 733
EcoT22I	ATGCAT	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	795
FaeI	CATG	3 cut(s)	39, 197, 357
FatI	CATG	3 cut(s)	35, 193, 353
FauI	CCCGC	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	6 cut(s)	168, 171, 378, 669, 810, 854
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	6 cut(s)	168, 171, 378, 669, 810, 854
FspBI	CTAG	1 cut(s)	979
FspI	TGCGCA	1 cut(s)	358
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	6 cut(s)	168, 171, 378, 669, 810, 854
HaeIII	GGCC	2 cut(s)	57, 683
HapII	CCGG	1 cut(s)	627
HgaI	GACGC	1 cut(s)	730
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	39, 197, 357
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	10, 386, 673
HpaII	CCGG	1 cut(s)	627
HphI	GGTGA	4 cut(s)	58, 457, 616, 647
Hpy166II	GTNNAC	3 cut(s)	9, 124, 866
Hpy188I	TCNGA	3 cut(s)	234, 290, 805
Hpy188III	TCNNGA	2 cut(s)	536, 745
Hpy8I	GTNNAC	3 cut(s)	9, 124, 866
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	412, 538
HpyCH4IV	ACGT	3 cut(s)	132, 528, 924
HpyCH4V	TGCA	6 cut(s)	76, 187, 221, 398, 693, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 458, 784
HpyF3I	CTNAG	5 cut(s)	59, 69, 287, 469, 758
HpySE526I	ACGT	3 cut(s)	132, 528, 924
Hsp92II	CATG	3 cut(s)	39, 197, 357
HspAI	GCGC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	48, 447, 935
LguI	GCTCTTC	1 cut(s)	800
LmnI	GCTCC	2 cut(s)	139, 274
Lsp1109I	GCAGC	6 cut(s)	154, 157, 389, 680, 796, 840
LweI	GCATC	4 cut(s)	208, 230, 256, 796
MaeI	CTAG	1 cut(s)	979
MaeII	ACGT	3 cut(s)	132, 528, 924
MaeIII	GTNAC	2 cut(s)	248, 635
MalI	GATC	3 cut(s)	50, 449, 937
MboI	GATC	3 cut(s)	48, 447, 935
MboII	GAAGA	5 cut(s)	32, 127, 221, 447, 787
MfeI	CAATTG	2 cut(s)	576, 717
MhlI	GDGCHC	3 cut(s)	144, 571, 795
MluCI	AATT	4 cut(s)	516, 576, 619, 717
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	4 cut(s)	434, 449, 519, 725
MnlI	CCTC	9 cut(s)	58, 68, 130, 169, 284, 296, 398, 450, 782
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	349
MseI	TTAA	1 cut(s)	927
MslI	CAYNNNNRTG	2 cut(s)	192, 629
MspA1I	CMGCKG	1 cut(s)	853
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	3 cut(s)	342, 641, 735
MunI	CAATTG	2 cut(s)	576, 717
MvaI	CCWGG	3 cut(s)	342, 641, 735
MwoI	GCNNNNNNNGC	3 cut(s)	377, 458, 784
NdeII	GATC	3 cut(s)	48, 447, 935
NlaIII	CATG	3 cut(s)	39, 197, 357
NlaIV	GGNNCC	3 cut(s)	423, 645, 732
NmuCI	GTSAC	1 cut(s)	635
NsbI	TGCGCA	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	386, 673
PflFI	GACNNNGTC	2 cut(s)	131, 551
PkrI	GCNGC	6 cut(s)	169, 172, 379, 670, 811, 855
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PpuMI	RGGWCCY	1 cut(s)	643
PsiI	TTATAA	1 cut(s)	837
Psp1406I	AACGTT	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	340, 639, 733
PspEI	GGTNACC	1 cut(s)	635
PspGI	CCWGG	3 cut(s)	340, 639, 733
PspN4I	GGNNCC	3 cut(s)	423, 645, 732
PspPI	GGNCC	3 cut(s)	407, 643, 730
PspPPI	RGGWCCY	1 cut(s)	643
PsrI	GAACNNNNNNTAC	2 cut(s)	647, 679
PstI	CTGCAG	1 cut(s)	873
PsyI	GACNNNGTC	2 cut(s)	131, 551
PvuII	CAGCTG	1 cut(s)	853
RseI	CAYNNNNRTG	2 cut(s)	192, 629
SalI	GTCGAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	800
SaqAI	TTAA	1 cut(s)	927
SatI	GCNGC	6 cut(s)	168, 171, 378, 669, 810, 854
Sau3AI	GATC	3 cut(s)	48, 447, 935
Sau96I	GGNCC	3 cut(s)	407, 643, 730
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	342, 641, 735
SduI	GDGCHC	3 cut(s)	144, 571, 795
SfaNI	GCATC	4 cut(s)	208, 230, 256, 796
SfcI	CTRYAG	1 cut(s)	869
SinI	GGWCC	3 cut(s)	407, 643, 730
SmiMI	CAYNNNNRTG	2 cut(s)	192, 629
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	4 cut(s)	516, 576, 619, 717
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	2 cut(s)	610, 648
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	979
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	340, 639, 733
TaiI	ACGT	3 cut(s)	135, 531, 927
TaqI	TCGA	5 cut(s)	8, 13, 135, 239, 306
TasI	AATT	4 cut(s)	516, 576, 619, 717
TfiI	GAWTC	2 cut(s)	386, 673
Tru1I	TTAA	1 cut(s)	927
Tru9I	TTAA	1 cut(s)	927
TscAI	CASTG	2 cut(s)	67, 873
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	6 cut(s)	167, 170, 377, 668, 809, 853
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	24, 292, 342
TspRI	CASTG	2 cut(s)	67, 873
Tth111I	GACNNNGTC	2 cut(s)	131, 551
VpaK11BI	GGWCC	3 cut(s)	407, 643, 730
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	516
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	1 cut(s)	979
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.