Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008222

Physical Location & Seq

Genomic Coordinates Forward (+)

77010538 .. 77012309

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG559600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGAGGAATTCGAGTTTCTGGGATTTTAGTTTTGTGTCTTTTGGTTGTTATAGGATCTACTGATGCTCAGTTGCAGTTGGGTTTCTACACCAAGAAGTGCCCAAAAGCAGAGAAGATAGTGAAGAACTTTGTTGAAGAGCACATTCGAAATGCTCCATCACTTGCAGCAGCCCTCATAAGAATGCACTTCCATGATTGCTTTGTCAGGGGCTGTGATGCTTCAGTGCTTGTGAACTCAACTTCGAGCAACCAAGCTGAAAAGGATGCTCCCCCAAATCTAACACTAAGAGGGTTTGACTTCATTGACAGAATAAAGAGCTTAGTTGAAGCTCAATGCCCTGGTGTAGTTTCATGTGCTGATGTTATTGCTTTGGCAGCAAGAGACTCTGTTGTAGCCACAGGAGGTCCCTTTTGGAATGTTCCTACAGGGAGAAGAGATGGAGTGATCTCAAGGTCATCAGAAGCTTTAGCAAGCATCCCATCCCCATTTAGCAACTTCACCACCCTCCAAACAAGTTTTGCTAATCAGGGTCTTGATTTGAAGGACTTGGTCCTGCTCTCTGGTGCTCACACCATCGGTGTCTCTCATTGCACATCGTTTACAAACCGCCTTTACAATTTCACTGGAAAAGGTGATCAAGACCCAGATTTAAACAGTCAATATGCAGCTAATCTCAAGGCAAAGAAATGCAAAAGTCTAAGTGATAACACAACAATAGTTGAGATGGACCCAGGAAGCCACAGGTCATTCGACCTTAGCTACTACACACTCTTGCTTAAGAGAAGGGGACTTTTCCAATCTGATTCTGCTTTAACAAAAAGCTCAACCACTTACAACTATATCAAGCAGCTTCTTCAAGGTTCGAGTCAAAACTTCCATGCTGAATTTGCCAAGTCTATGGAGAAAATGGGTCGGGTTAAGGTCAAGACGGGCTCATCTGGTCAGATTAGGAAGCATTGTGCAGTGGTGAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

35.38

Weight (kDa)

9.17

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	41 - 285	1.1e-85	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05260
fragaria_vesca	FvH4_6g43500 FvH4_6g43500
malus_domestica	MD09G1105900.v1.1 MD17G1092400.v1.1 MD17G1093600.v1.1
prunus_persica	Prupe.3G219700_v2.0.a1
pyrus_communis	pycom09g02850 pycom17g08950 pycom17g09070
rosa_chinensis	RchiOBHm_Chr2g0160001
rosa_laevigata	RLG00000021191
rosa_multiflora	Rmu_sc0002023.1_g000018 Rmu_sc0006940.1_g000001 Rmu_sc0029076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090100
rosa_rugosa	Rorug02G0479600 Rorug02G0479700
rosa_samantha	Rh2AG546300 Rh2BG559600 Rh2CG529700 Rh2DG568300
rosa_wichuraiana	Rw2G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	610
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	9, 887
AcuI	CTGAAG	1 cut(s)	207
AflII	CTTAAG	1 cut(s)	779
AgsI	TTSAA	4 cut(s)	137, 329, 544, 860
AjnI	CCWGG	2 cut(s)	340, 733
AluBI	AGCT	9 cut(s)	257, 321, 332, 467, 671, 762, 825, 853, 978
AluI	AGCT	9 cut(s)	257, 321, 332, 467, 671, 762, 825, 853, 978
Alw21I	GWGCWC	2 cut(s)	144, 571
Alw26I	GTCTC	2 cut(s)	378, 589
AlwI	GGATC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	213
ApeKI	GCWGC	5 cut(s)	167, 170, 377, 668, 850
ApoI	RAATTY	2 cut(s)	9, 887
AspS9I	GGNCC	3 cut(s)	407, 553, 730
AsuHPI	GGTGA	2 cut(s)	493, 647
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	3 cut(s)	407, 553, 730
BaeGI	GKGCMC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	938
Bbv12I	GWGCWC	2 cut(s)	144, 571
BbvI	GCAGC	5 cut(s)	179, 182, 389, 680, 862
BccI	CCATC	5 cut(s)	166, 434, 490, 584, 721
BciT130I	CCWGG	2 cut(s)	342, 735
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	378, 589
BfaI	CTAG	1 cut(s)	979
BfmI	CTRYAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	779
BisI	GCNGC	5 cut(s)	168, 171, 378, 669, 851
BlsI	GCNGC	5 cut(s)	169, 172, 379, 670, 852
Bme1390I	CCNGG	2 cut(s)	342, 735
Bme18I	GGWCC	3 cut(s)	407, 553, 730
BmgT120I	GGNCC	3 cut(s)	407, 553, 730
BmiI	GGNNCC	2 cut(s)	409, 732
BmrFI	CCNGG	2 cut(s)	342, 735
BmsI	GCATC	4 cut(s)	55, 208, 256, 486
Bpu10I	CCTNAGC	1 cut(s)	758
Bpu14I	TTCGAA	1 cut(s)	148
BpuEI	CTTGAG	2 cut(s)	436, 662
BsaJI	CCNNGG	2 cut(s)	340, 733
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	342, 735
BseDI	CCNNGG	2 cut(s)	340, 733
BseGI	GGATG	3 cut(s)	271, 477, 482
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	631
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	5 cut(s)	179, 182, 389, 680, 862
BsiHKAI	GWGCWC	2 cut(s)	144, 571
BslFI	GGGAC	2 cut(s)	393, 804
BsmAI	GTCTC	2 cut(s)	378, 589
BsmFI	GGGAC	2 cut(s)	393, 804
BsmI	GAATGC	1 cut(s)	189
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	4 cut(s)	104, 144, 571, 938
Bsp143I	GATC	3 cut(s)	56, 447, 637
BspACI	CCGC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	409, 732
BspPI	GGATC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	148
BspTI	CTTAAG	1 cut(s)	779
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	2 cut(s)	340, 733
BssMI	GATC	3 cut(s)	56, 447, 637
Bst2UI	CCWGG	2 cut(s)	342, 735
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	2 cut(s)	132, 430
BstAFI	CTTAAG	1 cut(s)	779
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	5 cut(s)	69, 287, 322, 701, 758
BstF5I	GGATG	3 cut(s)	271, 477, 482
BstKTI	GATC	3 cut(s)	59, 450, 640
BstMAI	GTCTC	2 cut(s)	378, 589
BstMBI	GATC	3 cut(s)	56, 447, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 890
BstNI	CCWGG	2 cut(s)	342, 735
BstSCI	CCNGG	2 cut(s)	340, 733
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	104
BstV1I	GCAGC	5 cut(s)	179, 182, 389, 680, 862
BstX2I	RGATCY	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	271, 477, 482
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	3 cut(s)	231, 624, 972
Cac8I	GCNNGC	1 cut(s)	475
CaiI	CAGNNNCTG	1 cut(s)	213
Cfr13I	GGNCC	3 cut(s)	407, 553, 730
CviAII	CATG	3 cut(s)	194, 354, 881
DdeI	CTNAG	5 cut(s)	69, 287, 322, 701, 758
DpnI	GATC	3 cut(s)	58, 449, 639
DpnII	GATC	3 cut(s)	56, 447, 637
DraI	TTTAAA	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	132, 430
EarI	CTCTTC	2 cut(s)	132, 430
Eco24I	GRGCYC	1 cut(s)	938
Eco47I	GGWCC	3 cut(s)	407, 553, 730
Eco57I	CTGAAG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	340, 733
EcoT38I	GRGCYC	1 cut(s)	938
FaeI	CATG	3 cut(s)	197, 357, 884
FaiI	YATR	8 cut(s)	53, 179, 195, 355, 666, 843, 882, 902
FaqI	GGGAC	2 cut(s)	393, 804
FatI	CATG	3 cut(s)	193, 353, 880
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	5 cut(s)	168, 171, 378, 669, 851
FokI	GGATG	3 cut(s)	278, 464, 469
FriOI	GRGCYC	1 cut(s)	938
Fsp4HI	GCNGC	5 cut(s)	168, 171, 378, 669, 851
FspBI	CTAG	1 cut(s)	979
GluI	GCNGC	5 cut(s)	168, 171, 378, 669, 851
Hin1II	CATG	3 cut(s)	197, 357, 884
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	3 cut(s)	386, 806, 868
HphI	GGTGA	2 cut(s)	493, 647
Hpy166II	GTNNAC	2 cut(s)	235, 603
Hpy188I	TCNGA	3 cut(s)	463, 805, 948
Hpy188III	TCNNGA	3 cut(s)	536, 641, 928
Hpy8I	GTNNAC	2 cut(s)	235, 603
HpyAV	CCTTC	2 cut(s)	538, 780
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4V	TGCA	7 cut(s)	76, 167, 187, 594, 668, 693, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 890
HpyF3I	CTNAG	5 cut(s)	69, 287, 322, 701, 758
Hsp92II	CATG	3 cut(s)	197, 357, 884
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	3 cut(s)	56, 447, 637
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	160, 274
Lsp1109I	GCAGC	5 cut(s)	179, 182, 389, 680, 862
LweI	GCATC	4 cut(s)	55, 208, 256, 486
MaeI	CTAG	1 cut(s)	979
MalI	GATC	3 cut(s)	58, 449, 639
MboI	GATC	3 cut(s)	56, 447, 637
MboII	GAAGA	5 cut(s)	127, 136, 149, 447, 848
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	4 cut(s)	104, 144, 571, 938
MluCI	AATT	3 cut(s)	9, 619, 887
MlyI	GAGTC	2 cut(s)	380, 877
MnlI	CCTC	4 cut(s)	185, 284, 398, 518
MseI	TTAA	4 cut(s)	653, 780, 815, 921
MslI	CAYNNNNRTG	2 cut(s)	182, 192
MspCI	CTTAAG	1 cut(s)	779
MspR9I	CCNGG	2 cut(s)	342, 735
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	2 cut(s)	342, 735
MwoI	GCNNNNNNNGC	2 cut(s)	377, 890
NdeII	GATC	3 cut(s)	56, 447, 637
NlaIII	CATG	3 cut(s)	197, 357, 884
NlaIV	GGNNCC	2 cut(s)	409, 732
NspV	TTCGAA	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	132
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	806
PflFI	GACNNNGTC	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	169, 172, 379, 670, 852
PleI	GAGTC	2 cut(s)	380, 876
PpsI	GAGTC	2 cut(s)	380, 876
PpuMI	RGGWCCY	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	340, 733
PspGI	CCWGG	2 cut(s)	340, 733
PspN4I	GGNNCC	2 cut(s)	409, 732
PspPI	GGNCC	3 cut(s)	407, 553, 730
PspPPI	RGGWCCY	1 cut(s)	407
PstNI	CAGNNNCTG	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	551
RseI	CAYNNNNRTG	2 cut(s)	182, 192
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	653, 780, 815, 921
SatI	GCNGC	5 cut(s)	168, 171, 378, 669, 851
Sau3AI	GATC	3 cut(s)	56, 447, 637
Sau96I	GGNCC	3 cut(s)	407, 553, 730
SchI	GAGTC	2 cut(s)	380, 877
ScrFI	CCNGG	2 cut(s)	342, 735
SduI	GDGCHC	4 cut(s)	104, 144, 571, 938
SfaNI	GCATC	4 cut(s)	55, 208, 256, 486
SfcI	CTRYAG	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	3 cut(s)	407, 553, 730
SmiMI	CAYNNNNRTG	2 cut(s)	182, 192
SmlI	CTYRAG	3 cut(s)	451, 677, 779
SmoI	CTYRAG	3 cut(s)	451, 677, 779
Sse9I	AATT	3 cut(s)	9, 619, 887
SsiI	CCGC	1 cut(s)	610
SspMI	CTAG	1 cut(s)	979
StyD4I	CCNGG	2 cut(s)	340, 733
TaaI	ACNGT	1 cut(s)	659
TaqI	TCGA	5 cut(s)	13, 148, 245, 753, 866
TasI	AATT	3 cut(s)	9, 619, 887
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	4 cut(s)	653, 780, 815, 921
Tru9I	TTAA	4 cut(s)	653, 780, 815, 921
TscAI	CASTG	3 cut(s)	231, 631, 972
TseI	GCWGC	5 cut(s)	167, 170, 377, 668, 850
TspDTI	ATGAA	2 cut(s)	292, 342
TspRI	CASTG	3 cut(s)	231, 631, 972
Tth111I	GACNNNGTC	1 cut(s)	551
Vha464I	CTTAAG	1 cut(s)	779
VpaK11BI	GGWCC	3 cut(s)	407, 553, 730
XapI	RAATTY	2 cut(s)	9, 887
XspI	CTAG	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.