small subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05610 AT1G05610 |
| malus_domestica | MD02G1000500.v1.1 MD15G1142300.v1.1 |
| prunus_persica | Prupe.7G270900_v2.0.a1 |
| pyrus_communis | pycom15g12840 pycom290g00110 pycom290g00120 |
| rosa_chinensis | RchiOBHm_Chr2g0084401 |
| rosa_multiflora | Rmu_co8406699.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00156130 |
| rosa_samantha | Rh2AG001500 Rh2CG001400 |
| rosa_wichuraiana | Rw2G000120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 552 |
| AccBSI | CCGCTC | 1 cut(s) | 587 |
| AciI | CCGC | 3 cut(s) | 167, 414, 587 |
| AclI | AACGTT | 1 cut(s) | 1308 |
| AclWI | GGATC | 5 cut(s) | 196, 219, 1114, 1253, 1402 |
| AcoI | YGGCCR | 2 cut(s) | 168, 843 |
| AcsI | RAATTY | 2 cut(s) | 32, 774 |
| AcuI | CTGAAG | 1 cut(s) | 894 |
| AfaI | GTAC | 1 cut(s) | 1004 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 770 |
| AgsI | TTSAA | 6 cut(s) | 100, 132, 154, 404, 491, 1337 |
| AhlI | ACTAGT | 1 cut(s) | 62 |
| AjnI | CCWGG | 3 cut(s) | 523, 859, 1292 |
| Alw26I | GTCTC | 3 cut(s) | 76, 1065, 1320 |
| AlwI | GGATC | 5 cut(s) | 196, 219, 1114, 1253, 1402 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 197 |
| AoxI | GGCC | 2 cut(s) | 168, 843 |
| ApeKI | GCWGC | 2 cut(s) | 103, 248 |
| ApoI | RAATTY | 2 cut(s) | 32, 774 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 614, 620, 646, 652 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 495, 748, 855 |
| AspLEI | GCGC | 1 cut(s) | 770 |
| AsuHPI | GGTGA | 4 cut(s) | 295, 814, 898, 1262 |
| AsuII | TTCGAA | 2 cut(s) | 1237, 1396 |
| BalI | TGGCCA | 1 cut(s) | 845 |
| BbsI | GAAGAC | 1 cut(s) | 741 |
| BbvI | GCAGC | 2 cut(s) | 115, 260 |
| BccI | CCATC | 6 cut(s) | 435, 734, 793, 899, 1183, 1430 |
| BciT130I | CCWGG | 3 cut(s) | 525, 861, 1294 |
| BciVI | GTATCC | 1 cut(s) | 1355 |
| BclI | TGATCA | 1 cut(s) | 67 |
| BcoDI | GTCTC | 3 cut(s) | 76, 1065, 1320 |
| BcuI | ACTAGT | 1 cut(s) | 62 |
| BfaI | CTAG | 4 cut(s) | 63, 428, 675, 1085 |
| BfmI | CTRYAG | 2 cut(s) | 256, 943 |
| BfuI | GTATCC | 1 cut(s) | 1355 |
| BglII | AGATCT | 1 cut(s) | 309 |
| BisI | GCNGC | 4 cut(s) | 104, 168, 249, 414 |
| BlsI | GCNGC | 4 cut(s) | 105, 169, 250, 415 |
| Bme1390I | CCNGG | 3 cut(s) | 525, 861, 1294 |
| BmrFI | CCNGG | 3 cut(s) | 525, 861, 1294 |
| BmsI | GCATC | 7 cut(s) | 259, 297, 309, 451, 464, 538, 546 |
| BpiI | GAAGAC | 1 cut(s) | 741 |
| Bpu14I | TTCGAA | 2 cut(s) | 1237, 1396 |
| BpuEI | CTTGAG | 1 cut(s) | 1341 |
| BsaAI | YACGTR | 2 cut(s) | 781, 1366 |
| BsaBI | GATNNNNATC | 2 cut(s) | 72, 560 |
| BsaJI | CCNNGG | 2 cut(s) | 524, 1013 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 770 |
| Bse1I | ACTGG | 1 cut(s) | 500 |
| Bse3DI | GCAATG | 1 cut(s) | 408 |
| Bse8I | GATNNNNATC | 2 cut(s) | 72, 560 |
| BseBI | CCWGG | 3 cut(s) | 525, 861, 1294 |
| BseDI | CCNNGG | 2 cut(s) | 524, 1013 |
| BseGI | GGATG | 2 cut(s) | 446, 1422 |
| BseJI | GATNNNNATC | 2 cut(s) | 72, 560 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 770 |
| BseMI | GCAATG | 1 cut(s) | 408 |
| BseMII | CTCAG | 4 cut(s) | 152, 189, 338, 803 |
| BseNI | ACTGG | 1 cut(s) | 500 |
| BseRI | GAGGAG | 2 cut(s) | 198, 940 |
| BseXI | GCAGC | 2 cut(s) | 115, 260 |
| Bsh1285I | CGRYCG | 1 cut(s) | 790 |
| BshFI | GGCC | 2 cut(s) | 170, 845 |
| BsiEI | CGRYCG | 1 cut(s) | 790 |
| BslFI | GGGAC | 1 cut(s) | 746 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 770 |
| BsmAI | GTCTC | 3 cut(s) | 76, 1065, 1320 |
| BsmBI | CGTCTC | 1 cut(s) | 1065 |
| BsmFI | GGGAC | 1 cut(s) | 746 |
| BsmI | GAATGC | 1 cut(s) | 1080 |
| BsnI | GGCC | 2 cut(s) | 170, 845 |
| Bsp119I | TTCGAA | 2 cut(s) | 1237, 1396 |
| Bsp1407I | TGTACA | 1 cut(s) | 1002 |
| BspACI | CCGC | 3 cut(s) | 167, 414, 587 |
| BspANI | GGCC | 2 cut(s) | 170, 845 |
| BspCNI | CTCAG | 4 cut(s) | 151, 190, 337, 804 |
| BspPI | GGATC | 5 cut(s) | 196, 219, 1114, 1253, 1402 |
| BspT104I | TTCGAA | 2 cut(s) | 1237, 1396 |
| BsrBI | CCGCTC | 1 cut(s) | 587 |
| BsrDI | GCAATG | 1 cut(s) | 408 |
| BsrGI | TGTACA | 1 cut(s) | 1002 |
| BsrI | ACTGG | 1 cut(s) | 500 |
| BssECI | CCNNGG | 2 cut(s) | 524, 1013 |
| Bst2UI | CCWGG | 3 cut(s) | 525, 861, 1294 |
| Bst4CI | ACNGT | 3 cut(s) | 296, 371, 1061 |
| Bst6I | CTCTTC | 1 cut(s) | 486 |
| BstAUI | TGTACA | 1 cut(s) | 1002 |
| BstBAI | YACGTR | 2 cut(s) | 781, 1366 |
| BstBI | TTCGAA | 2 cut(s) | 1237, 1396 |
| BstC8I | GCNNGC | 1 cut(s) | 847 |
| BstDEI | CTNAG | 5 cut(s) | 138, 198, 324, 608, 812 |
| BstF5I | GGATG | 2 cut(s) | 446, 1422 |
| BstHHI | GCGC | 1 cut(s) | 770 |
| BstMAI | GTCTC | 3 cut(s) | 76, 1065, 1320 |
| BstMCI | CGRYCG | 1 cut(s) | 790 |
| BstNI | CCWGG | 3 cut(s) | 525, 861, 1294 |
| BstSCI | CCNGG | 3 cut(s) | 523, 859, 1292 |
| BstSFI | CTRYAG | 2 cut(s) | 256, 943 |
| BstSNI | TACGTA | 1 cut(s) | 1366 |
| BstV1I | GCAGC | 2 cut(s) | 115, 260 |
| BstV2I | GAAGAC | 1 cut(s) | 741 |
| BstX2I | RGATCY | 2 cut(s) | 224, 309 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 632 |
| BstYI | RGATCY | 2 cut(s) | 224, 309 |
| BsuI | GTATCC | 1 cut(s) | 1355 |
| BsuRI | GGCC | 2 cut(s) | 170, 845 |
| BtsCI | GGATG | 2 cut(s) | 446, 1422 |
| BtsI | GCAGTG | 1 cut(s) | 1410 |
| BtsIMutI | CAGTG | 3 cut(s) | 301, 376, 1410 |
| Cac8I | GCNNGC | 1 cut(s) | 847 |
| CaiI | CAGNNNCTG | 1 cut(s) | 197 |
| CfoI | GCGC | 1 cut(s) | 770 |
| Csp6I | GTAC | 1 cut(s) | 1003 |
| CviAII | CATG | 4 cut(s) | 626, 646, 955, 1036 |
| CviQI | GTAC | 1 cut(s) | 1003 |
| DdeI | CTNAG | 5 cut(s) | 138, 198, 324, 608, 812 |
| EaeI | YGGCCR | 2 cut(s) | 168, 843 |
| Eam1104I | CTCTTC | 1 cut(s) | 486 |
| EarI | CTCTTC | 1 cut(s) | 486 |
| Eco105I | TACGTA | 1 cut(s) | 1366 |
| Eco57I | CTGAAG | 1 cut(s) | 894 |
| EcoRII | CCWGG | 3 cut(s) | 523, 859, 1292 |
| Esp3I | CGTCTC | 1 cut(s) | 1065 |
| FaeI | CATG | 4 cut(s) | 629, 649, 958, 1039 |
| FaqI | GGGAC | 1 cut(s) | 746 |
| FatI | CATG | 4 cut(s) | 625, 645, 954, 1035 |
| FauNDI | CATATG | 2 cut(s) | 48, 897 |
| FbaI | TGATCA | 1 cut(s) | 67 |
| Fnu4HI | GCNGC | 4 cut(s) | 104, 168, 249, 414 |
| FokI | GGATG | 2 cut(s) | 453, 1409 |
| Fsp4HI | GCNGC | 4 cut(s) | 104, 168, 249, 414 |
| FspBI | CTAG | 4 cut(s) | 63, 428, 675, 1085 |
| GlaI | GCGC | 1 cut(s) | 769 |
| GluI | GCNGC | 4 cut(s) | 104, 168, 249, 414 |
| HaeIII | GGCC | 2 cut(s) | 170, 845 |
| HhaI | GCGC | 1 cut(s) | 770 |
| Hin1II | CATG | 4 cut(s) | 629, 649, 958, 1039 |
| Hin6I | GCGC | 1 cut(s) | 768 |
| HinP1I | GCGC | 1 cut(s) | 768 |
| HincII | GTYRAC | 1 cut(s) | 695 |
| HindII | GTYRAC | 1 cut(s) | 695 |
| HindIII | AAGCTT | 2 cut(s) | 363, 806 |
| HphI | GGTGA | 4 cut(s) | 295, 814, 898, 1262 |
| Hpy166II | GTNNAC | 2 cut(s) | 695, 1005 |
| Hpy188III | TCNNGA | 3 cut(s) | 791, 1085, 1411 |
| Hpy8I | GTNNAC | 2 cut(s) | 695, 1005 |
| HpyAV | CCTTC | 6 cut(s) | 155, 869, 877, 1210, 1334, 1370 |
| HpyCH4III | ACNGT | 3 cut(s) | 296, 371, 1061 |
| HpyCH4IV | ACGT | 4 cut(s) | 746, 780, 1308, 1365 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 248, 272, 288, 317, 1080 |
| HpyF3I | CTNAG | 5 cut(s) | 138, 198, 324, 608, 812 |
| HpySE526I | ACGT | 4 cut(s) | 746, 780, 1308, 1365 |
| Hsp92II | CATG | 4 cut(s) | 629, 649, 958, 1039 |
| HspAI | GCGC | 1 cut(s) | 768 |
| Ksp22I | TGATCA | 1 cut(s) | 67 |
| LmnI | GCTCC | 4 cut(s) | 233, 927, 935, 1037 |
| Lsp1109I | GCAGC | 2 cut(s) | 115, 260 |
| LweI | GCATC | 7 cut(s) | 259, 297, 309, 451, 464, 538, 546 |
| MaeI | CTAG | 4 cut(s) | 63, 428, 675, 1085 |
| MaeII | ACGT | 4 cut(s) | 746, 780, 1308, 1365 |
| MaeIII | GTNAC | 4 cut(s) | 502, 616, 670, 971 |
| MbiI | CCGCTC | 1 cut(s) | 587 |
| MflI | RGATCY | 2 cut(s) | 224, 309 |
| MlsI | TGGCCA | 1 cut(s) | 845 |
| MluCI | AATT | 5 cut(s) | 32, 283, 331, 346, 774 |
| MluNI | TGGCCA | 1 cut(s) | 845 |
| MlyI | GAGTC | 3 cut(s) | 375, 1267, 1412 |
| MmeI | TCCRAC | 2 cut(s) | 583, 1096 |
| MnlI | CCTC | 9 cut(s) | 131, 176, 179, 918, 1008, 1023, 1035, 1097, 1147 |
| Mox20I | TGGCCA | 1 cut(s) | 845 |
| MroXI | GAANNNNTTC | 3 cut(s) | 495, 748, 855 |
| MscI | TGGCCA | 1 cut(s) | 845 |
| MseI | TTAA | 4 cut(s) | 330, 704, 824, 966 |
| Msp20I | TGGCCA | 1 cut(s) | 845 |
| MspR9I | CCNGG | 3 cut(s) | 525, 861, 1294 |
| Mva1269I | GAATGC | 1 cut(s) | 1080 |
| MvaI | CCWGG | 3 cut(s) | 525, 861, 1294 |
| NdeI | CATATG | 2 cut(s) | 48, 897 |
| NlaIII | CATG | 4 cut(s) | 629, 649, 958, 1039 |
| NmuCI | GTSAC | 1 cut(s) | 670 |
| NspV | TTCGAA | 2 cut(s) | 1237, 1396 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1267 |
| PctI | GAATGC | 1 cut(s) | 1080 |
| PdmI | GAANNNNTTC | 3 cut(s) | 495, 748, 855 |
| PfeI | GAWTC | 9 cut(s) | 194, 396, 656, 678, 978, 1131, 1157, 1234, 1380 |
| PflFI | GACNNNGTC | 1 cut(s) | 993 |
| PkrI | GCNGC | 4 cut(s) | 105, 169, 250, 415 |
| PleI | GAGTC | 3 cut(s) | 375, 1266, 1412 |
| PpsI | GAGTC | 3 cut(s) | 375, 1266, 1412 |
| Ppu21I | YACGTR | 2 cut(s) | 781, 1366 |
| PsiI | TTATAA | 1 cut(s) | 552 |
| Psp1406I | AACGTT | 1 cut(s) | 1308 |
| Psp6I | CCWGG | 3 cut(s) | 523, 859, 1292 |
| PspGI | CCWGG | 3 cut(s) | 523, 859, 1292 |
| PstNI | CAGNNNCTG | 1 cut(s) | 197 |
| PsuI | RGATCY | 2 cut(s) | 224, 309 |
| PsyI | GACNNNGTC | 1 cut(s) | 993 |
| RsaI | GTAC | 1 cut(s) | 1004 |
| RsaNI | GTAC | 1 cut(s) | 1003 |
| SaqAI | TTAA | 4 cut(s) | 330, 704, 824, 966 |
| SatI | GCNGC | 4 cut(s) | 104, 168, 249, 414 |
| SchI | GAGTC | 3 cut(s) | 375, 1267, 1412 |
| ScrFI | CCNGG | 3 cut(s) | 525, 861, 1294 |
| SfaNI | GCATC | 7 cut(s) | 259, 297, 309, 451, 464, 538, 546 |
| SfcI | CTRYAG | 2 cut(s) | 256, 943 |
| SfuI | TTCGAA | 2 cut(s) | 1237, 1396 |
| SmlI | CTYRAG | 1 cut(s) | 1356 |
| SmoI | CTYRAG | 1 cut(s) | 1356 |
| SnaBI | TACGTA | 1 cut(s) | 1366 |
| SpeI | ACTAGT | 1 cut(s) | 62 |
| Sse9I | AATT | 5 cut(s) | 32, 283, 331, 346, 774 |
| SsiI | CCGC | 3 cut(s) | 167, 414, 587 |
| SspMI | CTAG | 4 cut(s) | 63, 428, 675, 1085 |
| StyD4I | CCNGG | 3 cut(s) | 523, 859, 1292 |
| TaaI | ACNGT | 3 cut(s) | 296, 371, 1061 |
| TaiI | ACGT | 4 cut(s) | 749, 783, 1311, 1368 |
| TaqI | TCGA | 8 cut(s) | 59, 564, 790, 833, 1160, 1237, 1261, 1396 |
| TaqII | GACCGA | 1 cut(s) | 776 |
| TasI | AATT | 5 cut(s) | 32, 283, 331, 346, 774 |
| TatI | WGTACW | 1 cut(s) | 1002 |
| TauI | GCSGC | 2 cut(s) | 170, 416 |
| TfiI | GAWTC | 9 cut(s) | 194, 396, 656, 678, 978, 1131, 1157, 1234, 1380 |
| Tru1I | TTAA | 4 cut(s) | 330, 704, 824, 966 |
| Tru9I | TTAA | 4 cut(s) | 330, 704, 824, 966 |
| TscAI | CASTG | 3 cut(s) | 301, 376, 1410 |
| TseFI | GTSAC | 1 cut(s) | 670 |
| TseI | GCWGC | 2 cut(s) | 103, 248 |
| Tsp45I | GTSAC | 1 cut(s) | 670 |
| TspDTI | ATGAA | 4 cut(s) | 100, 634, 896, 1155 |
| TspRI | CASTG | 3 cut(s) | 301, 376, 1410 |
| Tth111I | GACNNNGTC | 1 cut(s) | 993 |
| XapI | RAATTY | 2 cut(s) | 32, 774 |
| XbaI | TCTAGA | 1 cut(s) | 1084 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 46 |
| XmnI | GAANNNNTTC | 3 cut(s) | 495, 748, 855 |
| XspI | CTAG | 4 cut(s) | 63, 428, 675, 1085 |