Rh2CG001400

Glucose-1-phosphate adenylyltransferase small subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016577
Physical Location & Seq
Reverse (-)
190901 .. 193873
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG001400.1

Sequence Viewer

Length: 1296 bp
ATGGTGATCTTGCAGAGTGTGGCAGCTATTGTGTTTGGGGATGGGCCAGAAACACAACTCTATCCATTGACAAAGAGAAGATCAGAAGGAGCCATACCTATCGCAGCAAGTTATAGACTGATTGATGCAGTTTTGAGCAACTGCATTAGCAGCAATATACACAGGATATATGCTCTGACACAATTTAACTCGACTTCTCTTAATTCCCACATTTCCAGGGCTTATTCTGGACTAGGTTTTGGAAATGAGGGGTTTGTTGAAGTAATTGCAGCATATCAAAGCTCTGATAATAATGGATGGTTTCAGGGAACTGCTGATGCTGTTAGAAGATGCCTATGGGTGCTGGAAGAGTATCCAATGTCTGAGTTTTTGGTCCTTCCTGGTTACCATCTCTACAAAATGGACTACCAGGAACTCATCAAGGCCCATCGAAACAATAAGGCAGACATCACAGTTGCAGCATCAGTTGCTAGGAGAATTCATGATCCGGGTTTTGGCTTTTTAGATGTGAATTCTGAAAATCAAGTTCTAGAGTTCAGATTGAAGTTGGAGGGAGGGCCAATTGATAATCACTCAGCCAAAGGCTCAAGGAAATCCAATGATACTGCTCTAAGTAGCATCACAAGTATGGGAATCTATCTCATCAACAGAGATGCATTGAAAAGGCTCCTAGAAGAACATTTTCCCGAGGCAAATGACTTTAGAACTGAAGTGATTCCCGGTGCCATATCCATTGGAATGAAGATTCAAGATTATGCATTTCATGGATACTGGGAGGACATGAGGAATATTGAAGCATTCTACCAAGCAAATATGCAAAGTACGAAGAGTACAGACATGGGATATAACTTTTGTGATAATGAAAGTCCAGTCCACACTTCGCGTCGTTGTCTGCCTCCAACTCTTATAACTGATTCTGTAATAACAAATAGTGTAGTTGGAGATGGTTGCATTCTTAATGGTTGCAGGATCAAAGGTACAGTAATTGGTATGAGGACAAGAATCGGAAATGGGTCAATAATCGAGGATTCAGTGATCATGGGTTCAACTTTATATCAACCAAACGCAGAAGATAGTGAAAACAGGAAAGGCACAGACATTCCCATCGGAATTGGGGAAGATACTCAAATAAGGAAGGCTATTGTAGACAAGAATGCAAGGATTGGCAAGAATGTAGTGATCATTAACAAAGACAATGCCCATGAAGGGGACAGAGAAACCGATGGCTATGTCATTCGTCAGGGAATAGTAGTTGTTCTTCGAAGTGCTGTAATCCCAGATGGCACCATTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

431

Amino Acids

47.64

Weight (kDa)

5.74

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 9 - 276 1.7e-39 Nucleotidyl transferase
LbH_GLGC PF25247 296 - 430 1.5e-49 GLGC left-handed parallel beta-helix domain
Hexapep_GlmU PF24894 306 - 349 2.9e-06 GlmU-like, C-terminal hexapeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05610 AT1G05610
malus_domestica MD02G1000500.v1.1 MD15G1142300.v1.1
prunus_persica Prupe.7G270900_v2.0.a1
pyrus_communis pycom15g12840 pycom290g00110 pycom290g00120
rosa_chinensis RchiOBHm_Chr2g0084401
rosa_multiflora Rmu_co8406699.1_g000001
rosa_roxburghii Rroxscaffold_2G00156130
rosa_samantha Rh2AG001500 Rh2CG001400
rosa_wichuraiana Rw2G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 908
AccB1I GGYRCC 2 cut(s) 722, 1283
AccI GTMKAC 1 cut(s) 1146
AccII CGCG 1 cut(s) 883
AclWI GGATC 2 cut(s) 479, 977
AcsI RAATTY 2 cut(s) 477, 511
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 3 cut(s) 823, 832, 979
AfiI CCNNNNNNNGG 3 cut(s) 494, 1206, 1207
AgsI TTSAA 6 cut(s) 260, 544, 661, 749, 794, 1047
AjnI CCWGG 3 cut(s) 215, 379, 408
AluBI AGCT 2 cut(s) 26, 282
AluI AGCT 2 cut(s) 26, 282
AlwI GGATC 2 cut(s) 479, 977
Ama87I CYCGRG 1 cut(s) 686
AoxI GGCC 3 cut(s) 44, 423, 557
ApeKI GCWGC 5 cut(s) 23, 104, 150, 269, 458
ApoI RAATTY 2 cut(s) 477, 511
Asp700I GAANNNNTTC 2 cut(s) 681, 714
AspS9I GGNCC 4 cut(s) 44, 373, 424, 557
AsuC2I CCSGG 2 cut(s) 489, 720
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 1261
AvaI CYCGRG 1 cut(s) 686
AvaII GGWCC 1 cut(s) 373
BanI GGYRCC 2 cut(s) 722, 1283
BarI GAAGNNNNNNTAC 4 cut(s) 78, 110, 1242, 1274
BbvI GCAGC 5 cut(s) 35, 116, 162, 281, 470
BccI CCATC 8 cut(s) 35, 291, 396, 435, 938, 1112, 1217, 1274
BciT130I CCWGG 3 cut(s) 217, 381, 410
BciVI GTATCC 2 cut(s) 363, 761
BclI TGATCA 2 cut(s) 1035, 1179
BcnI CCSGG 2 cut(s) 489, 720
BfaI CTAG 4 cut(s) 233, 471, 530, 671
BfuI GTATCC 2 cut(s) 363, 761
BisI GCNGC 5 cut(s) 24, 105, 151, 270, 459
BlsI GCNGC 5 cut(s) 25, 106, 152, 271, 460
Bme1390I CCNGG 5 cut(s) 217, 381, 410, 489, 720
Bme18I GGWCC 1 cut(s) 373
BmeT110I CYCGRG 1 cut(s) 686
BmgT120I GGNCC 4 cut(s) 44, 373, 424, 557
BmiI GGNNCC 4 cut(s) 91, 668, 724, 1285
BmrFI CCNGG 5 cut(s) 217, 381, 410, 489, 720
BmrI ACTGGG 1 cut(s) 781
BmsI GCATC 6 cut(s) 115, 307, 320, 470, 627, 643
BmuI ACTGGG 1 cut(s) 781
Bpu14I TTCGAA 1 cut(s) 1261
BpuEI CTTGAG 1 cut(s) 571
BpuMI CCSGG 2 cut(s) 489, 720
BsaJI CCNNGG 2 cut(s) 216, 687
Bsc4I CCNNNNNNNGG 3 cut(s) 494, 1206, 1207
Bse1I ACTGG 2 cut(s) 776, 869
BseBI CCWGG 3 cut(s) 217, 381, 410
BseDI CCNNGG 2 cut(s) 216, 687
BseGI GGATG 2 cut(s) 46, 302
BseLI CCNNNNNNNGG 3 cut(s) 494, 1206, 1207
BseMII CTCAG 2 cut(s) 354, 588
BseNI ACTGG 2 cut(s) 776, 869
BseXI GCAGC 5 cut(s) 35, 116, 162, 281, 470
Bsh1236I CGCG 1 cut(s) 883
BshFI GGCC 3 cut(s) 46, 425, 559
BshNI GGYRCC 2 cut(s) 722, 1283
BsiHKCI CYCGRG 1 cut(s) 686
BsiSI CCGG 2 cut(s) 488, 720
BslFI GGGAC 1 cut(s) 1223
BslI CCNNNNNNNGG 3 cut(s) 494, 1206, 1207
BsmFI GGGAC 1 cut(s) 1223
BsmI GAATGC 3 cut(s) 797, 951, 1159
BsnI GGCC 3 cut(s) 46, 425, 559
BsoBI CYCGRG 1 cut(s) 686
Bsp119I TTCGAA 1 cut(s) 1261
Bsp143I GATC 6 cut(s) 6, 80, 484, 969, 1035, 1179
BspANI GGCC 3 cut(s) 46, 425, 559
BspCNI CTCAG 2 cut(s) 355, 587
BspFNI CGCG 1 cut(s) 883
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 91, 668, 724, 1285
BspPI GGATC 2 cut(s) 479, 977
BspT104I TTCGAA 1 cut(s) 1261
BspT107I GGYRCC 2 cut(s) 722, 1283
BsrI ACTGG 2 cut(s) 776, 869
BssECI CCNNGG 2 cut(s) 216, 687
BssMI GATC 6 cut(s) 6, 80, 484, 969, 1035, 1179
Bst2UI CCWGG 3 cut(s) 217, 381, 410
Bst4CI ACNGT 2 cut(s) 454, 982
Bst6I CTCTTC 2 cut(s) 342, 821
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBI TTCGAA 1 cut(s) 1261
BstDEI CTNAG 3 cut(s) 363, 574, 611
BstEII GGTNACC 1 cut(s) 383
BstF5I GGATG 2 cut(s) 46, 302
BstFNI CGCG 1 cut(s) 883
BstKTI GATC 6 cut(s) 9, 83, 487, 972, 1038, 1182
BstMBI GATC 6 cut(s) 6, 80, 484, 969, 1035, 1179
BstMWI GCNNNNNNNGC 2 cut(s) 150, 467
BstNI CCWGG 3 cut(s) 217, 381, 410
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 5 cut(s) 215, 379, 408, 487, 718
BstUI CGCG 1 cut(s) 883
BstV1I GCAGC 5 cut(s) 35, 116, 162, 281, 470
BsuI GTATCC 2 cut(s) 363, 761
BsuRI GGCC 3 cut(s) 46, 425, 559
BtsCI GGATG 2 cut(s) 46, 302
BtsIMutI CAGTG 1 cut(s) 1038
CciI TCATGA 1 cut(s) 481
Cfr13I GGNCC 4 cut(s) 44, 373, 424, 557
CseI GACGC 1 cut(s) 872
Csp6I GTAC 3 cut(s) 822, 831, 978
CviAII CATG 6 cut(s) 482, 764, 781, 838, 1039, 1202
CviQI GTAC 3 cut(s) 822, 831, 978
DdeI CTNAG 3 cut(s) 363, 574, 611
DpnI GATC 6 cut(s) 8, 82, 486, 971, 1037, 1181
DpnII GATC 6 cut(s) 6, 80, 484, 969, 1035, 1179
Eam1104I CTCTTC 2 cut(s) 342, 821
EarI CTCTTC 2 cut(s) 342, 821
Eco47I GGWCC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 686
Eco91I GGTNACC 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 383
EcoRI GAATTC 2 cut(s) 477, 511
EcoRII CCWGG 3 cut(s) 215, 379, 408
EcoT22I ATGCAT 2 cut(s) 658, 760
FaeI CATG 6 cut(s) 485, 767, 784, 841, 1042, 1205
FaqI GGGAC 1 cut(s) 1223
FatI CATG 6 cut(s) 481, 763, 780, 837, 1038, 1201
FbaI TGATCA 2 cut(s) 1035, 1179
FblI GTMKAC 1 cut(s) 1146
Fnu4HI GCNGC 5 cut(s) 24, 105, 151, 270, 459
FokI GGATG 2 cut(s) 53, 309
Fsp4HI GCNGC 5 cut(s) 24, 105, 151, 270, 459
FspBI CTAG 4 cut(s) 233, 471, 530, 671
GluI GCNGC 5 cut(s) 24, 105, 151, 270, 459
HaeIII GGCC 3 cut(s) 46, 425, 559
HapII CCGG 2 cut(s) 488, 720
HgaI GACGC 1 cut(s) 872
Hin1II CATG 6 cut(s) 485, 767, 784, 841, 1042, 1205
HinfI GANTC 6 cut(s) 633, 715, 745, 914, 1002, 1028
HpaII CCGG 2 cut(s) 488, 720
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 874, 1147
Hpy188I TCNGA 9 cut(s) 85, 177, 286, 364, 517, 539, 1007, 1109, 1295
Hpy188III TCNNGA 5 cut(s) 228, 482, 530, 686, 749
Hpy8I GTNNAC 2 cut(s) 874, 1147
Hpy99I CGWCG 1 cut(s) 888
HpyAV CCTTC 4 cut(s) 80, 386, 1129, 1199
HpyCH4III ACNGT 2 cut(s) 454, 982
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 467
HpyF3I CTNAG 3 cut(s) 363, 574, 611
Hsp92II CATG 6 cut(s) 485, 767, 784, 841, 1042, 1205
Ksp22I TGATCA 2 cut(s) 1035, 1179
Kzo9I GATC 6 cut(s) 6, 80, 484, 969, 1035, 1179
LmnI GCTCC 2 cut(s) 89, 672
Lsp1109I GCAGC 5 cut(s) 35, 116, 162, 281, 470
LweI GCATC 6 cut(s) 115, 307, 320, 470, 627, 643
MaeI CTAG 4 cut(s) 233, 471, 530, 671
MaeIII GTNAC 1 cut(s) 383
MalI GATC 6 cut(s) 8, 82, 486, 971, 1037, 1181
MboI GATC 6 cut(s) 6, 80, 484, 969, 1035, 1179
MboII GAAGA 9 cut(s) 90, 339, 359, 686, 754, 838, 1082, 1130, 1250
MfeI CAATTG 1 cut(s) 561
MluCI AATT 8 cut(s) 182, 202, 264, 477, 511, 561, 984, 1110
MmeI TCCRAC 3 cut(s) 528, 919, 923
MnlI CCTC 9 cut(s) 241, 544, 548, 682, 769, 777, 906, 987, 1018
Mph1103I ATGCAT 2 cut(s) 658, 760
MroXI GAANNNNTTC 2 cut(s) 681, 714
MseI TTAA 4 cut(s) 186, 201, 957, 1185
MslI CAYNNNNRTG 2 cut(s) 626, 737
MspI CCGG 2 cut(s) 488, 720
MspR9I CCNGG 5 cut(s) 217, 381, 410, 489, 720
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 3 cut(s) 797, 951, 1159
MvaI CCWGG 3 cut(s) 217, 381, 410
MvnI CGCG 1 cut(s) 883
MwoI GCNNNNNNNGC 2 cut(s) 150, 467
NciI CCSGG 2 cut(s) 489, 720
NdeII GATC 6 cut(s) 6, 80, 484, 969, 1035, 1179
NlaIII CATG 6 cut(s) 485, 767, 784, 841, 1042, 1205
NlaIV GGNNCC 4 cut(s) 91, 668, 724, 1285
NsiI ATGCAT 2 cut(s) 658, 760
NspV TTCGAA 1 cut(s) 1261
PagI TCATGA 1 cut(s) 481
PctI GAATGC 3 cut(s) 797, 951, 1159
PdmI GAANNNNTTC 2 cut(s) 681, 714
PfeI GAWTC 6 cut(s) 633, 715, 745, 914, 1002, 1028
PkrI GCNGC 5 cut(s) 25, 106, 152, 271, 460
PsiI TTATAA 1 cut(s) 908
Psp6I CCWGG 3 cut(s) 215, 379, 408
PspEI GGTNACC 1 cut(s) 383
PspGI CCWGG 3 cut(s) 215, 379, 408
PspN4I GGNNCC 4 cut(s) 91, 668, 724, 1285
PspPI GGNCC 4 cut(s) 44, 373, 424, 557
RsaI GTAC 3 cut(s) 823, 832, 979
RsaNI GTAC 3 cut(s) 822, 831, 978
RseI CAYNNNNRTG 2 cut(s) 626, 737
SaqAI TTAA 4 cut(s) 186, 201, 957, 1185
SatI GCNGC 5 cut(s) 24, 105, 151, 270, 459
Sau3AI GATC 6 cut(s) 6, 80, 484, 969, 1035, 1179
Sau96I GGNCC 4 cut(s) 44, 373, 424, 557
ScrFI CCNGG 5 cut(s) 217, 381, 410, 489, 720
SetI ASST 5 cut(s) 28, 100, 238, 284, 979
SfaNI GCATC 6 cut(s) 115, 307, 320, 470, 627, 643
SfuI TTCGAA 1 cut(s) 1261
SinI GGWCC 1 cut(s) 373
SmiMI CAYNNNNRTG 2 cut(s) 626, 737
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
Sse9I AATT 8 cut(s) 182, 202, 264, 477, 511, 561, 984, 1110
SspI AATATT 1 cut(s) 790
SspMI CTAG 4 cut(s) 233, 471, 530, 671
StyD4I CCNGG 5 cut(s) 215, 379, 408, 487, 718
TaaI ACNGT 2 cut(s) 454, 982
TaqI TCGA 4 cut(s) 191, 430, 1023, 1261
TasI AATT 8 cut(s) 182, 202, 264, 477, 511, 561, 984, 1110
TatI WGTACW 1 cut(s) 830
TfiI GAWTC 6 cut(s) 633, 715, 745, 914, 1002, 1028
Tru1I TTAA 4 cut(s) 186, 201, 957, 1185
Tru9I TTAA 4 cut(s) 186, 201, 957, 1185
TscAI CASTG 1 cut(s) 1038
TseI GCWGC 5 cut(s) 23, 104, 150, 269, 458
TspDTI ATGAA 5 cut(s) 470, 752, 755, 876, 1218
TspRI CASTG 1 cut(s) 1038
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 2 cut(s) 477, 511
XbaI TCTAGA 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 1146
XmnI GAANNNNTTC 2 cut(s) 681, 714
XspI CTAG 4 cut(s) 233, 471, 530, 671
Zsp2I ATGCAT 2 cut(s) 658, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.