Rroxscaffold_2G00156130

Glucose-1-phosphate adenylyltransferase small subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016577
Physical Location & Seq
Forward (+)
92579050 .. 92584045
4996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00156130.1

Sequence Viewer

Length: 399 bp
ATGGGAATCTATCTCATCAGCAGAGATGCATTGAAAAGGCTCCTAGAAGAACATTTTCCCGAGGCAAATGACTTTAGAACTGAAGTGATTCCCGGTGCCATATCCACTGGAATGAAGCCAAACACAGAAGATAGTGAAAACAGGAAAGGCACAGACATTCCCATCGGAATTGGGGAAGATACTCAAATAAGGAAGGCTATTGTAGACAAGAATGCAAGGATTGGCAAGAATGTAGTGATCATTAAAAAAGACAATGCCCAGGAAGGGGACAGAGAAACCGATGGCTATGTCATTCGTCAGGGAATAGTAGTTTGTTCTTCGAAGTACTGTAATCCCAGATGGCACCATTCTCTGAGAATTCTAAAACAGCTTCCCATTCTTTTACCAATAGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

132

Amino Acids

14.87

Weight (kDa)

8.58

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LbH_GLGC PF25247 41 - 106 2.4e-20 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05610 AT1G05610
malus_domestica MD02G1000500.v1.1 MD15G1142300.v1.1
prunus_persica Prupe.7G270900_v2.0.a1
pyrus_communis pycom15g12840 pycom290g00110 pycom290g00120
rosa_chinensis RchiOBHm_Chr2g0084401
rosa_multiflora Rmu_co8406699.1_g000001
rosa_roxburghii Rroxscaffold_2G00156130
rosa_samantha Rh2AG001500 Rh2CG001400
rosa_wichuraiana Rw2G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 95, 342
AccI GTMKAC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 264, 265
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 59
ApoI RAATTY 1 cut(s) 357
Asp700I GAANNNNTTC 2 cut(s) 54, 87
AsuC2I CCSGG 1 cut(s) 93
AsuII TTCGAA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 59
BanI GGYRCC 2 cut(s) 95, 342
BccI CCATC 3 cut(s) 170, 275, 333
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 1 cut(s) 93
BfaI CTAG 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 2 cut(s) 93, 260
BmeT110I CYCGRG 1 cut(s) 59
BmiI GGNNCC 3 cut(s) 41, 97, 344
BmrFI CCNGG 2 cut(s) 93, 260
BmsI GCATC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 60, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 265
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 60, 258
BseLI CCNNNNNNNGG 2 cut(s) 264, 265
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 112
BshNI GGYRCC 2 cut(s) 95, 342
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 264, 265
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 41, 97, 344
BspT104I TTCGAA 1 cut(s) 320
BspT107I GGYRCC 2 cut(s) 95, 342
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 60, 258
BssMI GATC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 353
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 91, 258
BtsIMutI CAGTG 1 cut(s) 105
Csp6I GTAC 1 cut(s) 325
CviJI RGCY 5 cut(s) 40, 118, 197, 285, 370
CviKI_1 RGCY 5 cut(s) 40, 118, 197, 285, 370
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 353
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 31
FaiI YATR 2 cut(s) 101, 288
FaqI GGGAC 1 cut(s) 281
FbaI TGATCA 1 cut(s) 237
FblI GTMKAC 1 cut(s) 204
FspBI CTAG 1 cut(s) 44
HapII CCGG 1 cut(s) 93
HinfI GANTC 2 cut(s) 6, 88
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 167, 354
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 187, 257
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 2 cut(s) 29, 215
HpyF3I CTNAG 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 93, 106, 127, 245, 272, 284, 349
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 44
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 4 cut(s) 59, 140, 188, 309
MluCI AATT 2 cut(s) 168, 357
MnlI CCTC 1 cut(s) 55
Mph1103I ATGCAT 1 cut(s) 31
MroXI GAANNNNTTC 2 cut(s) 54, 87
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 93, 260
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 260
NciI CCSGG 1 cut(s) 93
NdeII GATC 1 cut(s) 237
NlaIV GGNNCC 3 cut(s) 41, 97, 344
NsiI ATGCAT 1 cut(s) 31
NspV TTCGAA 1 cut(s) 320
PctI GAATGC 1 cut(s) 217
PdmI GAANNNNTTC 2 cut(s) 54, 87
PfeI GAWTC 2 cut(s) 6, 88
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 41, 97, 344
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 1 cut(s) 237
ScaI AGTACT 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 93, 260
SetI ASST 1 cut(s) 372
SfaNI GCATC 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 2 cut(s) 168, 357
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 91, 258
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 320
TasI AATT 2 cut(s) 168, 357
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 2 cut(s) 6, 88
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 112
XapI RAATTY 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 2 cut(s) 54, 87
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 326
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.