pycom15g12840

Glucose-1-phosphate adenylyltransferase small subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016577
Physical Location & Seq
Reverse (-)
8801580 .. 8803509
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12840.4

Sequence Viewer

Length: 1248 bp
ATGCTGCTCAGAAACCAAATCCTTGCCTCTAACCCTGATCTAGCCATGCAAGCAAGTTGGATTCAGAAGACAAAGGCGAGCAAATTATTCCTTCAATATAGATTTGCAATTGTACATACATTCACTTCTCTTGTCGTGCTCTGTCTGTATATCGTGATGGTGATCTTTCATCGTTGTTTTCCCTCCGTTGTTGGCATCCGCACAAAGTGCTCCGTTACTGCATCAGATGGTAGGATTCACGAAAACCATTCCCTCAAGCTTCATTCTACCACTCTTCCTCCGAGCTTCTTGATATCCAAGTCACACCAGCCTGAGACTCCAACTTCGTTGTTTCCTCCGGCCACTCAGAGTGTGGCAGCTGTTGTGTTCGGGGATGGGCACGAGTCACAACTTTACCCGCTGACAAAGAGAAGATCAGAAGGGGCGATACCTATTGCGGCAAATTACAGGCTCATTGATTCAGTTGTGAGCAACTGCATTAGCAGCAACATAAGCCACATATATGCTCTCACACAGGTTAACTCTACTTCTCTCAATTCCCACCTTTCCAGAGCTTACTCTGGAGTTGGTCTTGGGAATGAGGGCTTTGTTCAGGTCATTGCCGCGTATCAGAGCCCCGGCAATAACAGATGGTTTCAGGGAACTGCTGATGCTGTGAGAAGATGTCTGTGGGTGCTGGAAAAGTATCCCGTGACTGAGTTTTTGGTCCTTCCCGGTCACCATCTCTACACAATGGACTACCAGAAACTCATCATGTCCCACCGAGACAATGGCGCTGACATTACCATTGCTACATCTGTTGCCAGGAGACTTCATGATCCGGGATTTGGCTTTCTAAATGTGAATTCTGAAAATCAAGTTACAGATTTCAGACTGAATTTGGAGGGAAAGTCGGTTAATGTTGCTTCGGCCAAAAGCTCAAGAAAATCGAACAGTACGGCTCAAAGTAGTATGGCAAGTATGGGAATTTATCTCATCAACAGAGGTGTAATGAAAAGGCTTCTGGAAGAACATTTTCCAAAGGGAAATGACTTCACAAGTGAAGTAATTCCGGGTGCCATATCTTTCGGAATGAAGGTTCAAGCTTATGCATTTGACGGATATTGGGAGGACATGAGGAATATTAAAGCATTCTACGAAGCAAATATGCAAAGCACAAAGGATGCAGACGTAGGATATAACGCAGCTTCTACGACAGAGAAAGTCCGGTCTACACATTGCCTCGGCGTCTGCCTCCAACTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

416

Amino Acids

46.0

Weight (kDa)

9.2

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05610 AT1G05610
malus_domestica MD02G1000500.v1.1 MD15G1142300.v1.1
prunus_persica Prupe.7G270900_v2.0.a1
pyrus_communis pycom15g12840 pycom290g00110 pycom290g00120
rosa_chinensis RchiOBHm_Chr2g0084401
rosa_multiflora Rmu_co8406699.1_g000001
rosa_roxburghii Rroxscaffold_2G00156130
rosa_samantha Rh2AG001500 Rh2CG001400
rosa_wichuraiana Rw2G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1055
AccI GTMKAC 1 cut(s) 1211
AccII CGCG 1 cut(s) 605
AciI CCGC 4 cut(s) 199, 398, 437, 603
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 2 cut(s) 339, 909
AcsI RAATTY 3 cut(s) 844, 877, 966
AcyI GRCGYC 1 cut(s) 1227
AdeI CACNNNGTG 1 cut(s) 207
AfaI GTAC 2 cut(s) 114, 937
AfiI CCNNNNNNNGG 1 cut(s) 827
AgsI TTSAA 2 cut(s) 95, 1082
AjnI CCWGG 1 cut(s) 803
AloI GAACNNNNNNTCC 2 cut(s) 1062, 1094
AluBI AGCT 7 cut(s) 259, 285, 359, 554, 918, 1085, 1187
AluI AGCT 7 cut(s) 259, 285, 359, 554, 918, 1085, 1187
Alw21I GWGCWC 2 cut(s) 141, 212
Alw26I GTCTC 3 cut(s) 308, 759, 802
AlwI GGATC 1 cut(s) 812
AoxI GGCC 2 cut(s) 339, 909
ApeKI GCWGC 4 cut(s) 4, 356, 483, 1184
ApoI RAATTY 3 cut(s) 844, 877, 966
ArsI GACNNNNNNTTYG 4 cut(s) 307, 339, 685, 717
Asp700I GAANNNNTTC 2 cut(s) 1014, 1047
AspLEI GCGC 1 cut(s) 776
AspS9I GGNCC 1 cut(s) 706
AsuC2I CCSGG 4 cut(s) 618, 714, 822, 1053
AsuHPI GGTGA 2 cut(s) 172, 710
AvaII GGWCC 1 cut(s) 706
BaeGI GKGCMC 1 cut(s) 381
BanI GGYRCC 1 cut(s) 1055
BanII GRGCYC 1 cut(s) 617
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 141, 212
BbvI GCAGC 3 cut(s) 368, 495, 1196
BccI CCATC 5 cut(s) 151, 221, 368, 624, 729
BceAI ACGGC 1 cut(s) 954
BciT130I CCWGG 1 cut(s) 805
BciVI GTATCC 1 cut(s) 696
BcnI CCSGG 4 cut(s) 618, 714, 822, 1053
BcoDI GTCTC 3 cut(s) 308, 759, 802
BfaI CTAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 777
BfuI GTATCC 1 cut(s) 696
BisI GCNGC 6 cut(s) 5, 357, 438, 484, 603, 1185
BlsI GCNGC 6 cut(s) 6, 358, 439, 485, 604, 1186
Bme1390I CCNGG 5 cut(s) 618, 714, 805, 822, 1053
Bme18I GGWCC 1 cut(s) 706
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 1 cut(s) 1057
BmrFI CCNGG 5 cut(s) 618, 714, 805, 822, 1053
BmsI GCATC 4 cut(s) 204, 230, 640, 1153
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 582
BpuEI CTTGAG 2 cut(s) 239, 904
BpuMI CCSGG 4 cut(s) 618, 714, 822, 1053
BsaBI GATNNNNATC 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 1227
BsaJI CCNNGG 2 cut(s) 616, 1222
BsaWI WCCGGW 1 cut(s) 1206
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 875, 905
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse3DI GCAATG 3 cut(s) 597, 786, 1216
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 1 cut(s) 805
BseDI CCNNGG 2 cut(s) 616, 1222
BseGI GGATG 3 cut(s) 195, 379, 1168
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMI GCAATG 3 cut(s) 597, 786, 1216
BseMII CTCAG 4 cut(s) 22, 303, 359, 687
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 3 cut(s) 368, 495, 1196
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 2 cut(s) 341, 911
BshNI GGYRCC 1 cut(s) 1055
BsiHKAI GWGCWC 2 cut(s) 141, 212
BsiSI CCGG 6 cut(s) 338, 618, 714, 821, 1052, 1207
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 3 cut(s) 308, 759, 802
BsmFI GGGAC 1 cut(s) 742
BsmI GAATGC 1 cut(s) 1130
BsnI GGCC 2 cut(s) 341, 911
Bsp1286I GDGCHC 4 cut(s) 141, 212, 381, 617
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 4 cut(s) 37, 162, 413, 817
BspACI CCGC 4 cut(s) 199, 398, 437, 603
BspANI GGCC 2 cut(s) 341, 911
BspCNI CTCAG 4 cut(s) 21, 304, 358, 688
BspFNI CGCG 1 cut(s) 605
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 1 cut(s) 1057
BspPI GGATC 1 cut(s) 812
BspT107I GGYRCC 1 cut(s) 1055
BsrDI GCAATG 3 cut(s) 597, 786, 1216
BsrGI TGTACA 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 616, 1222
BssMI GATC 4 cut(s) 37, 162, 413, 817
BssNI GRCGYC 1 cut(s) 1227
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 805
Bst4CI ACNGT 1 cut(s) 935
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 1227
BstAPI GCANNNNNTGC 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 51, 79
BstDEI CTNAG 4 cut(s) 8, 312, 345, 696
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 3 cut(s) 195, 379, 1168
BstFNI CGCG 1 cut(s) 605
BstH2I RGCGCY 1 cut(s) 777
BstHHI GCGC 1 cut(s) 776
BstKTI GATC 4 cut(s) 40, 165, 416, 820
BstMAI GTCTC 3 cut(s) 308, 759, 802
BstMBI GATC 4 cut(s) 37, 162, 413, 817
BstMWI GCNNNNNNNGC 4 cut(s) 50, 207, 483, 492
BstNI CCWGG 1 cut(s) 805
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 5 cut(s) 616, 712, 803, 820, 1051
BstSLI GKGCMC 1 cut(s) 381
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 3 cut(s) 368, 495, 1196
BstV2I GAAGAC 1 cut(s) 74
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 2 cut(s) 341, 911
BtsCI GGATG 3 cut(s) 195, 379, 1168
Cac8I GCNNGC 2 cut(s) 51, 79
CciI TCATGA 1 cut(s) 814
CfoI GCGC 1 cut(s) 776
Cfr13I GGNCC 1 cut(s) 706
CseI GACGC 1 cut(s) 1216
Csp6I GTAC 2 cut(s) 113, 936
CviAII CATG 4 cut(s) 46, 754, 815, 1114
CviQI GTAC 2 cut(s) 113, 936
DdeI CTNAG 4 cut(s) 8, 312, 345, 696
DpnI GATC 4 cut(s) 39, 164, 415, 819
DpnII GATC 4 cut(s) 37, 162, 413, 817
DraIII CACNNNGTG 1 cut(s) 207
EaeI YGGCCR 2 cut(s) 339, 909
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 706
Eco91I GGTNACC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 803
EcoRV GATATC 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 1093
EcoT38I GRGCYC 1 cut(s) 617
FaeI CATG 4 cut(s) 49, 757, 818, 1117
FaqI GGGAC 1 cut(s) 742
FatI CATG 4 cut(s) 45, 753, 814, 1113
FauI CCCGC 1 cut(s) 405
FblI GTMKAC 1 cut(s) 1211
Fnu4HI GCNGC 6 cut(s) 5, 357, 438, 484, 603, 1185
FokI GGATG 3 cut(s) 182, 386, 1175
FriOI GRGCYC 1 cut(s) 617
Fsp4HI GCNGC 6 cut(s) 5, 357, 438, 484, 603, 1185
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 775
GluI GCNGC 6 cut(s) 5, 357, 438, 484, 603, 1185
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 777
HaeIII GGCC 2 cut(s) 341, 911
HapII CCGG 6 cut(s) 338, 618, 714, 821, 1052, 1207
HgaI GACGC 1 cut(s) 1216
HhaI GCGC 1 cut(s) 776
Hin1I GRCGYC 1 cut(s) 1227
Hin1II CATG 4 cut(s) 49, 757, 818, 1117
Hin6I GCGC 1 cut(s) 774
HinP1I GCGC 1 cut(s) 774
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 2 cut(s) 257, 1083
HinfI GANTC 5 cut(s) 61, 235, 316, 383, 458
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 6 cut(s) 338, 618, 714, 821, 1052, 1207
HphI GGTGA 2 cut(s) 172, 710
Hpy166II GTNNAC 2 cut(s) 520, 1212
Hpy188III TCNNGA 8 cut(s) 154, 239, 289, 549, 561, 815, 921, 1004
Hpy8I GTNNAC 2 cut(s) 520, 1212
HpyAV CCTTC 4 cut(s) 101, 413, 719, 1069
HpyCH4III ACNGT 1 cut(s) 935
HpyCH4IV ACGT 1 cut(s) 1170
HpyCH4V TGCA 7 cut(s) 49, 107, 221, 477, 1091, 1150, 1166
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 207, 483, 492
HpyF3I CTNAG 4 cut(s) 8, 312, 345, 696
HpySE526I ACGT 1 cut(s) 1170
Hsp92I GRCGYC 1 cut(s) 1227
Hsp92II CATG 4 cut(s) 49, 757, 818, 1117
HspAI GCGC 1 cut(s) 774
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 4 cut(s) 37, 162, 413, 817
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 3 cut(s) 368, 495, 1196
LweI GCATC 4 cut(s) 204, 230, 640, 1153
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 1170
MaeIII GTNAC 6 cut(s) 214, 300, 384, 691, 716, 859
MalI GATC 4 cut(s) 39, 164, 415, 819
MboI GATC 4 cut(s) 37, 162, 413, 817
MboII GAAGA 5 cut(s) 79, 266, 423, 672, 1019
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 4 cut(s) 141, 212, 381, 617
MluCI AATT 8 cut(s) 83, 108, 442, 535, 844, 877, 966, 1047
MlyI GAGTC 2 cut(s) 310, 392
MmeI TCCRAC 2 cut(s) 38, 344
Mph1103I ATGCAT 1 cut(s) 1093
MroXI GAANNNNTTC 2 cut(s) 1014, 1047
MseI TTAA 3 cut(s) 519, 897, 1125
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 2 cut(s) 359, 400
MspI CCGG 6 cut(s) 338, 618, 714, 821, 1052, 1207
MspR9I CCNGG 5 cut(s) 618, 714, 805, 822, 1053
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 1130
MvaI CCWGG 1 cut(s) 805
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 4 cut(s) 50, 207, 483, 492
NciI CCSGG 4 cut(s) 618, 714, 822, 1053
NdeII GATC 4 cut(s) 37, 162, 413, 817
NlaIII CATG 4 cut(s) 49, 757, 818, 1117
NlaIV GGNNCC 1 cut(s) 1057
NmeAIII GCCGAG 1 cut(s) 1203
NmuCI GTSAC 4 cut(s) 300, 384, 691, 716
NsiI ATGCAT 1 cut(s) 1093
PagI TCATGA 1 cut(s) 814
PctI GAATGC 1 cut(s) 1130
PdmI GAANNNNTTC 2 cut(s) 1014, 1047
PfeI GAWTC 3 cut(s) 61, 235, 458
PfoI TCCNGGA 1 cut(s) 820
PkrI GCNGC 6 cut(s) 6, 358, 439, 485, 604, 1186
PleI GAGTC 2 cut(s) 310, 391
PpsI GAGTC 2 cut(s) 310, 391
Psp6I CCWGG 1 cut(s) 803
PspEI GGTNACC 1 cut(s) 716
PspGI CCWGG 1 cut(s) 803
PspN4I GGNNCC 1 cut(s) 1057
PspPI GGNCC 1 cut(s) 706
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 2 cut(s) 114, 937
RsaNI GTAC 2 cut(s) 113, 936
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 3 cut(s) 519, 897, 1125
SatI GCNGC 6 cut(s) 5, 357, 438, 484, 603, 1185
Sau3AI GATC 4 cut(s) 37, 162, 413, 817
Sau96I GGNCC 1 cut(s) 706
SchI GAGTC 2 cut(s) 310, 392
ScrFI CCNGG 5 cut(s) 618, 714, 805, 822, 1053
SduI GDGCHC 4 cut(s) 141, 212, 381, 617
SfaNI GCATC 4 cut(s) 204, 230, 640, 1153
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 2 cut(s) 254, 919
SmoI CTYRAG 2 cut(s) 254, 919
Sse9I AATT 8 cut(s) 83, 108, 442, 535, 844, 877, 966, 1047
SsiI CCGC 4 cut(s) 199, 398, 437, 603
SspI AATATT 1 cut(s) 1123
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 5 cut(s) 616, 712, 803, 820, 1051
TaaI ACNGT 1 cut(s) 935
TaiI ACGT 1 cut(s) 1173
TaqI TCGA 1 cut(s) 929
TasI AATT 8 cut(s) 83, 108, 442, 535, 844, 877, 966, 1047
TatI WGTACW 1 cut(s) 112
TauI GCSGC 2 cut(s) 440, 605
TfiI GAWTC 3 cut(s) 61, 235, 458
Tru1I TTAA 3 cut(s) 519, 897, 1125
Tru9I TTAA 3 cut(s) 519, 897, 1125
TseFI GTSAC 4 cut(s) 300, 384, 691, 716
TseI GCWGC 4 cut(s) 4, 356, 483, 1184
Tsp45I GTSAC 4 cut(s) 300, 384, 691, 716
TspDTI ATGAA 5 cut(s) 158, 251, 803, 1007, 1088
TspGWI ACGGA 3 cut(s) 175, 202, 1113
VpaK11BI GGWCC 1 cut(s) 706
XapI RAATTY 3 cut(s) 844, 877, 966
XcmI CCANNNNNNNNNTGG 2 cut(s) 349, 767
XmiI GTMKAC 1 cut(s) 1211
XmnI GAANNNNTTC 2 cut(s) 1014, 1047
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.