AT1G05710

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004729
Physical Location & Seq
Forward (+)
1714818 .. 1717290
2473 bp
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UTR
Exon/CDS
Intron
AT1G05710.4

Sequence Viewer

Length: 450 bp
ATGGAATTCTCTAGAGACGCTGGAATGATGATGGAGAATAAGCGGAATGTCTGCTCTCTCGGAGAAAGCAGTATCAAACGCCACAAGTCTGATCTCTCTTTCAGTTCCAAGGAGAGGAAGGACAAGGTTGGAGAACGTATTTCAGCTCTTCAACAAATAGTTTCCCCTTATGGAAAGACCGACACTGCATCAGTTCTTCTAGACGCGATGCATTACATAGAGTTTCTTCACGAACAAGTGAAGGTGCTAAGTGCTCCGTATCTGCAAACGGTACCTGATGCTACGCAGGAGGAGCTGGAGCAGTACAGCCTGAGAAACAGAGGATTATGTCTTGTTCCAATGGAGAATACAGTTGGAGTTGCTCAAAGCAACGGCGCTGATATATGGGCGCCCGTGAAGACTCCTCTATCACCAGCTTTCAGTGTCACATCTCAATCACCCTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.61

Weight (kDa)

6.3

Isoelectric Point (pI)

59.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 271
AccB1I GGYRCC 2 cut(s) 271, 388
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 2 cut(s) 273, 305
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 3 cut(s) 146, 295, 416
AluI AGCT 3 cut(s) 146, 295, 416
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 5
Asp718I GGTACC 1 cut(s) 271
AspLEI GCGC 2 cut(s) 377, 391
AsuHPI GGTGA 2 cut(s) 402, 429
BanI GGYRCC 2 cut(s) 271, 388
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 256
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 12, 200
BfoI RGCGCY 2 cut(s) 378, 392
BmiI GGNNCC 2 cut(s) 273, 390
BmsI GCATC 3 cut(s) 197, 198, 268
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 305, 393
Bsh1236I CGCG 1 cut(s) 206
BshNI GGYRCC 2 cut(s) 271, 388
BsiHKAI GWGCWC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 9
BsmBI CGTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 273, 390
BspQI GCTCTTC 1 cut(s) 153
BspT107I GGYRCC 2 cut(s) 271, 388
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 271, 352
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 248, 311
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 2 cut(s) 378, 392
BstHHI GCGC 2 cut(s) 377, 391
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstUI CGCG 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 404
BtgZI GCGATG 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 427
CfoI GCGC 2 cut(s) 377, 391
CseI GACGC 2 cut(s) 26, 212
Csp6I GTAC 2 cut(s) 272, 304
CviJI RGCY 4 cut(s) 146, 295, 309, 416
CviKI_1 RGCY 4 cut(s) 146, 295, 309, 416
CviQI GTAC 2 cut(s) 272, 304
DdeI CTNAG 2 cut(s) 248, 311
DinI GGCGCC 1 cut(s) 390
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 213
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 9
FaiI YATR 5 cut(s) 171, 218, 328, 383, 385
FspBI CTAG 2 cut(s) 12, 200
GlaI GCGC 2 cut(s) 376, 390
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 2 cut(s) 378, 392
HgaI GACGC 2 cut(s) 26, 212
HhaI GCGC 2 cut(s) 377, 391
Hin1I GRCGYC 1 cut(s) 389
Hin6I GCGC 2 cut(s) 375, 389
HinP1I GCGC 2 cut(s) 375, 389
HinfI GANTC 1 cut(s) 400
HphI GGTGA 2 cut(s) 402, 429
Hpy188I TCNGA 2 cut(s) 62, 91
Hpy188III TCNNGA 3 cut(s) 12, 200, 230
HpyAV CCTTC 2 cut(s) 112, 235
HpyCH4III ACNGT 2 cut(s) 271, 352
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 188, 211, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 248, 311
HpySE526I ACGT 1 cut(s) 136
Hsp92I GRCGYC 1 cut(s) 389
HspAI GCGC 2 cut(s) 375, 389
KasI GGCGCC 1 cut(s) 388
KpnI GGTACC 1 cut(s) 275
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 3 cut(s) 259, 292, 298
LpnPI CCDG 6 cut(s) 6, 272, 281, 288, 323, 426
LweI GCATC 3 cut(s) 197, 198, 268
MaeI CTAG 2 cut(s) 12, 200
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 424
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 4 cut(s) 140, 188, 218, 409
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 2 cut(s) 109, 334
MnlI CCTC 4 cut(s) 108, 283, 314, 414
Mph1103I ATGCAT 1 cut(s) 213
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 292
NarI GGCGCC 1 cut(s) 389
NdeII GATC 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 273, 390
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 153
PleI GAGTC 1 cut(s) 394
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 273, 390
RsaI GTAC 2 cut(s) 273, 305
RsaNI GTAC 2 cut(s) 272, 304
SapI GCTCTTC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 1 cut(s) 394
SduI GDGCHC 1 cut(s) 256
SetI ASST 7 cut(s) 129, 139, 148, 246, 277, 297, 418
SfaNI GCATC 3 cut(s) 197, 198, 268
SfoI GGCGCC 1 cut(s) 390
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 43
SspDI GGCGCC 1 cut(s) 388
SspMI CTAG 2 cut(s) 12, 200
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 271, 352
TaiI ACGT 1 cut(s) 139
TaqII GACCGA 1 cut(s) 194
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 303
TscAI CASTG 2 cut(s) 190, 427
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 2 cut(s) 190, 427
XapI RAATTY 1 cut(s) 5
XbaI TCTAGA 2 cut(s) 11, 199
XspI CTAG 2 cut(s) 12, 200
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.